CsaV3_1G003020 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G003020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 1888908 .. 1889310 (+)
RNA-Seq Expression	CsaV3_1G003020
Synteny	CsaV3_1G003020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGAATAAAGGCTGTAATTTGCCTTTTCAACTCTGCTCAAGAAACTGGTATATAATAAAATTTGAAATACTTCCTTGTTTATACCATATATTAAATCAACAGATCTTTTTCCAGCTAATTACTTCTCAAAACACCAGTCTCTCTCAGATCACCACACTGGTTTTGCAATGCAAATCTTAATCCCACAAAATTTACCAATTGGGTATGCCATGGAATACTCCCAATATCATAATACTTCAAAGCAACAAACGAAAAAGGACACCTCTAGAGAATCAAACCAAGTAGAAGAAGAGACCCAGAAACTAGAATCATCTGATTTTCAAGGCAAATACAGAACATTCAGAGTATCAGCAATTACTTATAATGGGAAAGGTAAGAATCAAAGAGAAAACCGGTAA

mRNA sequence

ATGGAAAGAATAAAGGCTGTAATTTGCCTTTTCAACTCTGCTCAAGAAACTGATCTTTTTCCAGCTAATTACTTCTCAAAACACCAGTCTCTCTCAGATCACCACACTGGTTTTGCAATGCAAATCTTAATCCCACAAAATTTACCAATTGGGTATGCCATGGAATACTCCCAATATCATAATACTTCAAAGCAACAAACGAAAAAGGACACCTCTAGAGAATCAAACCAAGTAGAAGAAGAGACCCAGAAACTAGAATCATCTGATTTTCAAGGCAAATACAGAACATTCAGAGTATCAGCAATTACTTATAATGGGAAAGGTAAGAATCAAAGAGAAAACCGGTAA

Coding sequence (CDS)

ATGGAAAGAATAAAGGCTGTAATTTGCCTTTTCAACTCTGCTCAAGAAACTGATCTTTTTCCAGCTAATTACTTCTCAAAACACCAGTCTCTCTCAGATCACCACACTGGTTTTGCAATGCAAATCTTAATCCCACAAAATTTACCAATTGGGTATGCCATGGAATACTCCCAATATCATAATACTTCAAAGCAACAAACGAAAAAGGACACCTCTAGAGAATCAAACCAAGTAGAAGAAGAGACCCAGAAACTAGAATCATCTGATTTTCAAGGCAAATACAGAACATTCAGAGTATCAGCAATTACTTATAATGGGAAAGGTAAGAATCAAAGAGAAAACCGGTAA

Protein sequence

MERIKAVICLFNSAQETDLFPANYFSKHQSLSDHHTGFAMQILIPQNLPIGYAMEYSQYHNTSKQQTKKDTSRESNQVEEETQKLESSDFQGKYRTFRVSAITYNGKGKNQRENR*

Homology

[Close]

BLAST of CsaV3_1G003020 vs. NCBI nr
Match: KAE8652436.1 (hypothetical protein Csa_013939 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MERIKAVICLFNSAQETDLFPANYFSKHQSLSDHHTGFAMQILIPQNLPIGYAMEYSQYH 60
           MERIKAVICLFNSAQETDLFPANYFSKHQSLSDHHTGFAMQILIPQNLPIGYAMEYSQYH
Sbjct: 1   MERIKAVICLFNSAQETDLFPANYFSKHQSLSDHHTGFAMQILIPQNLPIGYAMEYSQYH 60

Query: 61  NTSKQQTKKDTSRESNQVEEETQKLESSDFQGKYRTFRVSAITYNGKGKNQRENR 116
           NTSKQQTKKDTSRESNQVEEETQKLESSDFQGKYRTFRVSAITYNGKGKNQRENR
Sbjct: 61  NTSKQQTKKDTSRESNQVEEETQKLESSDFQGKYRTFRVSAITYNGKGKNQRENR 115

The following BLAST results are available for this feature:

BLAST of CsaV3_1G003020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652436.1	2.4e-56	100.00	hypothetical protein Csa_013939 [Cucumis sativus]	[more]

BLAST of CsaV3_1G003020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G003020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G003020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G003020.1	CsaV3_1G003020.1	mRNA