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CsaV3_1G002960 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATTCTCTCTGTTTCATCCTTTCCTTTCTCAACCCCATTTTGATTCACCCAGATTCTTTCCCTCTCAATCATTAATCCTTCTTCCCCATTCCCAATTCGGGACTGCTGTTTTTCTGGCCGTCGGAGGCCTTTTCCTTTTCATTTCTCCGGCTGCCAGTCTCTATGAACTTTTCATCATCCACTACTTGGGATTCCGATATCTTCGACGTGAGTATGTTTTTCTTGTTTAATATATTGTTTTTCTTTTGAACGTGTGATCAAGAATTCTTTTAATTTTAGGTTGTTGGGAGGGATATAGGCGATGGAATTGTGAATAGAAGTTTTTTTTTTTTATGTATGTAGCTAGGAATCGTTGTTGAATTTAAAGGGGATTTTTAATTCGTGAATTCTTTAATCTTGGAAGAATTTTTATGTTATTGGGAGTTATAGGCGATGAAATGGTAGATAGATTGTTGTTATGTATATAACAAGCAATTGGCATTGAAATTAAGGGGATGTTGGAATGTGATGTCTGAATTGTATTTTTCAATAGTTCGATATATAGATAGCAATTGTCGTTGAATTGAATTGCATCGACTCTATTTTGAAACGTGATTTTCGAATTGTACAGTTTCAAGAAGTTGGGGTTATAGATATTAGGTTTGGTTTGTTCATCATAGACTGAACACAACATGCACTGGTTGGGACAACTATAATTTCTCTACAAGTTGGGAGATGGGAGATGGGAGAAGGAACTTTTAGATATCTCATATTTTCCAATTTTCTATTATTTTCTTTTTTTGTTAGAGATAATATGATTGATCAATTGTTCATTTGACGAAATGTAGAGCGTGAAGTTTTACATTTATTGTTTCTGTAGAATATGTTCTTATGGAGTGACAGAAGTAAGAACCTAGAACTAGTCACAAACACGATCAAAAGTTGTAAAGGACTTGGATGTGTTGATGTGTTTATCCCAATTAATGTAATTGCATCTTACAGGCGGCCATAATATTCAGACTACGTCTGACTCAAAAACTAAATAGTGGTGCCTGAAGAAGCAATTCAGATATCTTTATCTATGGAATCTGGGCAAAAGATCGAGGCCATTGAATCAAAAACACATTCTATCAGCAGTACAAGCGGAGTTGATCATTCTATTTCGAGCAATAAATTAGCCTCTTCTTTATCCTCAGCATCTGATTCATCCTCTGACAGCTCCTTTGAATTGATTGTAACTGGGCTCGACGGTTCCATTGGTGTTGCAAGTGATTCTTTAAAAAAGGACGAGTTGCACGTTGTAGGACGCTCGGACTCTGGATTCGTGTTTATTACTAGTGATGATGTTGGAACTCATTCTCCAAAGACTGATCTTCCTGGGACAGCCAAGATACCAAGTCAGTCGTTGTCACGGTCGTCATCGTCCTCATCTGAATCTTCCCTGCACGATCATGTGATTGAACTCCCAAAGCCTGTGGAGCCAGATTCGAAAAAAAGACTACCAGGTCTTAAACATGGTGAAACCAATAATGTTGAAAGTAGGAAAAGTATACAAACTTGTTCTTCCACCTCGTCTTCCTCGTCATCCGAATCTGAATCTAAACATAAACTTCAAAAGGGTAGAGATGTTGATAATTTATTGTCGAAAAATCCTAGCTCTCCAAGCGTGGTAAAGGACAACAGGTTGGTTACAGATTTCAGTGATGATGATGTTCCCACCAGCAATGGACAATCAGCAGTAACTCCTACCCATAGGGTAGACTCAAGCTCGGGTTGCGAGACACCTACTCAATATCCTCAAACTCAAATGATGGATAGAGTTGAGGATCCTACTTCTCCTGCATATAGAATTCCATCTCGTGTCTTTTCAAGAACTAAATCTACAGCGCCTATGGAATGGAGTGTTGCTTCAAATGAATCATTGTTCAGCATTCAGATGGGGAACATGAGTTTTACTAGAGAACAGTTGTGTTGGCTAGGAAAATCAGGCGAGCTATGTAGGCCTGGTGAATCCACAATCGACATGTCCCAACATTTGGCTATGAAAACTTCTGATTGTGGATTGAAGAGCAAAAGTCCAAATGGTGATCTATCAGCAACTGAGGCACGAGCTGCAGAAACAATGAGGGAGGTTATACGAGAAAACTCAGAGAACCAACGAAAGGAGAGTTCAACACTAACGGAGTCGTCGTCTCAATCGGCCAGCATCTCTCATCAGTCAGAAGGAAGCACAAAATCTTTCCAGTTTCCAATGTAAGCCACCTAAATTCTCAAATCTTTATCAACTAAAACGACAACTAATCTCCAAAACTAATTGGTTTAGTTAACTCACGAAATCTTAGAATATAATGTCACCTTTAACGCATTTAGTTCAACAAACATATGAATGTTTTGCGGTGGAAATTGAAGATTGACAGGAGAAGGAGGAAAAAGCATTTCATTGAAGGGAGGCGACCTGGAGAAGGCGAAACAAGAAGGGAAACCAGAATCACCAGAAACACCTTCAAATCCACAAACCCCAAAAGAGAAAAATTCAGACGAATCGCCAAAAGCAACTACAAACACGGGGCAAAAGAGATGGTTTTCTTGCTTTTCTTGCTGCCCGTTCTGTAGTTAAGAAGTGTACAGGTTCATCAACGATGCCCCTCATTTCTTATGCTAACTAGGATAATCCCAACAGGATAGTTTGCACAGTTTAATTAGTTCTGTTAACAACACGAGTTTTGTTTTATTAGGCACAGTTTCTTTTTTCTCAGTTCATGGTAACTGGCTAAACGATCTTTGGACTCTGAATCGATCTTATACGCATATTGTTTTGTGTGATATTGACAAATTTTTGGTGAAGAAATCACTGATCTGATGAGATTAAAAAGACAGAAAAAAATAAAATGGTTCAAAGGAAGTTTGAAACTTTTCTCATTTTCTTTGGTGTGATCATGAAACATGAGAATCAGTACCCCCA ATGGAATCTGGGCAAAAGATCGAGGCCATTGAATCAAAAACACATTCTATCAGCAGTACAAGCGGAGTTGATCATTCTATTTCGAGCAATAAATTAGCCTCTTCTTTATCCTCAGCATCTGATTCATCCTCTGACAGCTCCTTTGAATTGATTGTAACTGGGCTCGACGGTTCCATTGGTGTTGCAAGTGATTCTTTAAAAAAGGACGAGTTGCACGTTGTAGGACGCTCGGACTCTGGATTCGTGTTTATTACTAGTGATGATGTTGGAACTCATTCTCCAAAGACTGATCTTCCTGGGACAGCCAAGATACCAAGTCAGTCGTTGTCACGGTCGTCATCGTCCTCATCTGAATCTTCCCTGCACGATCATGTGATTGAACTCCCAAAGCCTGTGGAGCCAGATTCGAAAAAAAGACTACCAGGTCTTAAACATGGTGAAACCAATAATGTTGAAAGTAGGAAAAGTATACAAACTTGTTCTTCCACCTCGTCTTCCTCGTCATCCGAATCTGAATCTAAACATAAACTTCAAAAGGGTAGAGATGTTGATAATTTATTGTCGAAAAATCCTAGCTCTCCAAGCGTGGTAAAGGACAACAGGTTGGTTACAGATTTCAGTGATGATGATGTTCCCACCAGCAATGGACAATCAGCAGTAACTCCTACCCATAGGGTAGACTCAAGCTCGGGTTGCGAGACACCTACTCAATATCCTCAAACTCAAATGATGGATAGAGTTGAGGATCCTACTTCTCCTGCATATAGAATTCCATCTCGTGTCTTTTCAAGAACTAAATCTACAGCGCCTATGGAATGGAGTGTTGCTTCAAATGAATCATTGTTCAGCATTCAGATGGGGAACATGAGTTTTACTAGAGAACAGTTGTGTTGGCTAGGAAAATCAGGCGAGCTATGTAGGCCTGGTGAATCCACAATCGACATGTCCCAACATTTGGCTATGAAAACTTCTGATTGTGGATTGAAGAGCAAAAGTCCAAATGGTGATCTATCAGCAACTGAGGCACGAGCTGCAGAAACAATGAGGGAGGTTATACGAGAAAACTCAGAGAACCAACGAAAGGAGAGTTCAACACTAACGGAGTCGTCGTCTCAATCGGCCAGCATCTCTCATCAGTCAGAAGGAAGCACAAAATCTTTCCAGTTTCCAATATTGACAGGAGAAGGAGGAAAAAGCATTTCATTGAAGGGAGGCGACCTGGAGAAGGCGAAACAAGAAGGGAAACCAGAATCACCAGAAACACCTTCAAATCCACAAACCCCAAAAGAGAAAAATTCAGACGAATCGCCAAAAGCAACTACAAACACGGGGCAAAAGAGATGGTTTTCTTGCTTTTCTTGCTGCCCGTTCTGTAGTTAA ATGGAATCTGGGCAAAAGATCGAGGCCATTGAATCAAAAACACATTCTATCAGCAGTACAAGCGGAGTTGATCATTCTATTTCGAGCAATAAATTAGCCTCTTCTTTATCCTCAGCATCTGATTCATCCTCTGACAGCTCCTTTGAATTGATTGTAACTGGGCTCGACGGTTCCATTGGTGTTGCAAGTGATTCTTTAAAAAAGGACGAGTTGCACGTTGTAGGACGCTCGGACTCTGGATTCGTGTTTATTACTAGTGATGATGTTGGAACTCATTCTCCAAAGACTGATCTTCCTGGGACAGCCAAGATACCAAGTCAGTCGTTGTCACGGTCGTCATCGTCCTCATCTGAATCTTCCCTGCACGATCATGTGATTGAACTCCCAAAGCCTGTGGAGCCAGATTCGAAAAAAAGACTACCAGGTCTTAAACATGGTGAAACCAATAATGTTGAAAGTAGGAAAAGTATACAAACTTGTTCTTCCACCTCGTCTTCCTCGTCATCCGAATCTGAATCTAAACATAAACTTCAAAAGGGTAGAGATGTTGATAATTTATTGTCGAAAAATCCTAGCTCTCCAAGCGTGGTAAAGGACAACAGGTTGGTTACAGATTTCAGTGATGATGATGTTCCCACCAGCAATGGACAATCAGCAGTAACTCCTACCCATAGGGTAGACTCAAGCTCGGGTTGCGAGACACCTACTCAATATCCTCAAACTCAAATGATGGATAGAGTTGAGGATCCTACTTCTCCTGCATATAGAATTCCATCTCGTGTCTTTTCAAGAACTAAATCTACAGCGCCTATGGAATGGAGTGTTGCTTCAAATGAATCATTGTTCAGCATTCAGATGGGGAACATGAGTTTTACTAGAGAACAGTTGTGTTGGCTAGGAAAATCAGGCGAGCTATGTAGGCCTGGTGAATCCACAATCGACATGTCCCAACATTTGGCTATGAAAACTTCTGATTGTGGATTGAAGAGCAAAAGTCCAAATGGTGATCTATCAGCAACTGAGGCACGAGCTGCAGAAACAATGAGGGAGGTTATACGAGAAAACTCAGAGAACCAACGAAAGGAGAGTTCAACACTAACGGAGTCGTCGTCTCAATCGGCCAGCATCTCTCATCAGTCAGAAGGAAGCACAAAATCTTTCCAGTTTCCAATATTGACAGGAGAAGGAGGAAAAAGCATTTCATTGAAGGGAGGCGACCTGGAGAAGGCGAAACAAGAAGGGAAACCAGAATCACCAGAAACACCTTCAAATCCACAAACCCCAAAAGAGAAAAATTCAGACGAATCGCCAAAAGCAACTACAAACACGGGGCAAAAGAGATGGTTTTCTTGCTTTTCTTGCTGCCCGTTCTGTAGTTAA MESGQKIEAIESKTHSISSTSGVDHSISSNKLASSLSSASDSSSDSSFELIVTGLDGSIGVASDSLKKDELHVVGRSDSGFVFITSDDVGTHSPKTDLPGTAKIPSQSLSRSSSSSSESSLHDHVIELPKPVEPDSKKRLPGLKHGETNNVESRKSIQTCSSTSSSSSSESESKHKLQKGRDVDNLLSKNPSSPSVVKDNRLVTDFSDDDVPTSNGQSAVTPTHRVDSSSGCETPTQYPQTQMMDRVEDPTSPAYRIPSRVFSRTKSTAPMEWSVASNESLFSIQMGNMSFTREQLCWLGKSGELCRPGESTIDMSQHLAMKTSDCGLKSKSPNGDLSATEARAAETMREVIRENSENQRKESSTLTESSSQSASISHQSEGSTKSFQFPILTGEGGKSISLKGGDLEKAKQEGKPESPETPSNPQTPKEKNSDESPKATTNTGQKRWFSCFSCCPFCS* Homology
BLAST of CsaV3_1G002960 vs. NCBI nr
Match: XP_011648451.1 (uncharacterized protein LOC105434465 [Cucumis sativus] >KGN63731.1 hypothetical protein Csa_013801 [Cucumis sativus]) HSP 1 Score: 854.4 bits (2206), Expect = 4.6e-244 Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. NCBI nr
Match: XP_008453279.1 (PREDICTED: uncharacterized protein LOC103494046 [Cucumis melo]) HSP 1 Score: 736.9 bits (1901), Expect = 1.1e-208 Identity = 419/470 (89.15%), Postives = 428/470 (91.06%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. NCBI nr
Match: KAA0057996.1 (putative serine-rich protein C215.13-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 732.6 bits (1890), Expect = 2.0e-207 Identity = 416/466 (89.27%), Postives = 425/466 (91.20%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. NCBI nr
Match: XP_038880274.1 (uncharacterized serine-rich protein C215.13 [Benincasa hispida]) HSP 1 Score: 635.2 bits (1637), Expect = 4.4e-178 Identity = 366/474 (77.22%), Postives = 392/474 (82.70%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. NCBI nr
Match: XP_022135339.1 (suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135340.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135341.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135342.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135343.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135344.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135345.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135346.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135347.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135349.1 suppressor protein SRP40 isoform X1 [Momordica charantia] >XP_022135350.1 suppressor protein SRP40 isoform X1 [Momordica charantia]) HSP 1 Score: 499.2 bits (1284), Expect = 3.8e-137 Identity = 316/474 (66.67%), Postives = 354/474 (74.68%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. ExPASy TrEMBL
Match: A0A0A0LUN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013790 PE=4 SV=1) HSP 1 Score: 854.4 bits (2206), Expect = 2.2e-244 Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. ExPASy TrEMBL
Match: A0A1S3BVA3 (uncharacterized protein LOC103494046 OS=Cucumis melo OX=3656 GN=LOC103494046 PE=4 SV=1) HSP 1 Score: 736.9 bits (1901), Expect = 5.2e-209 Identity = 419/470 (89.15%), Postives = 428/470 (91.06%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. ExPASy TrEMBL
Match: A0A5A7UV09 (Putative serine-rich protein C215.13-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003000 PE=4 SV=1) HSP 1 Score: 732.6 bits (1890), Expect = 9.9e-208 Identity = 416/466 (89.27%), Postives = 425/466 (91.20%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. ExPASy TrEMBL
Match: A0A6J1C0E0 (suppressor protein SRP40 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007326 PE=4 SV=1) HSP 1 Score: 499.2 bits (1284), Expect = 1.8e-137 Identity = 316/474 (66.67%), Postives = 354/474 (74.68%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. ExPASy TrEMBL
Match: A0A6J1C0F1 (uncharacterized protein LOC111007326 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007326 PE=4 SV=1) HSP 1 Score: 476.1 bits (1224), Expect = 1.7e-130 Identity = 299/473 (63.21%), Postives = 331/473 (69.98%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. TAIR 10
Match: AT1G74220.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.1); Has 383 Blast hits to 347 proteins in 86 species: Archae - 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink). ) HSP 1 Score: 81.3 bits (199), Expect = 2.3e-15 Identity = 94/291 (32.30%), Postives = 129/291 (44.33%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. TAIR 10
Match: AT2G03630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). ) HSP 1 Score: 64.7 bits (156), Expect = 2.2e-10 Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = 0
BLAST of CsaV3_1G002960 vs. TAIR 10
Match: AT2G03630.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 87 Blast hits to 87 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 64.7 bits (156), Expect = 2.2e-10 Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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