CsaV3_1G000470 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G000470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein of unknown function (DUF 3339)
Location	chr1: 272275 .. 274088 (-)
RNA-Seq Expression	CsaV3_1G000470
Synteny	CsaV3_1G000470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTATGAAATATAATATAGTTAATTTTTGGAAATTAAATTTAAACTATATCAATGTTAAGTTATTGACAATGGTGTAATTTCTTTTTATAAAGTTAAATGTGTTGTCCAAATACAAAAAGAAAAAATTGATGAGATTACATCATTCCCAACACGCATGATTTGACAATTAAAAGATTTACGAAGCACCAAAAGCAGTCTTTTCCTCTTCCATCGTCTTCGGAATTTTTGGGGAAAGTACTCTACTTTACCCCCACCCTCTATTTATCAAAATTTATAATGTTAAAACTCTAATACAATTCTTACAATTGAAAAGCCTAATACCAAAGTACATTAAATTTTAGGTCATAAAGTTTGTGAGACGATGACAGAAAAAAACAAATAAAAGAAATGTGAAAGGCTCATCCGTCCACGTGAAGCATCAAGATCAACGCAGTTGTCGAATCAGTGTCCAGCTTCCAAGTTTCAAAACCACTCCATTTCTTTACCCTTCTCAAATCTTCTCAACTTAAAACCACACCATCCCTATTCATCCCCAATCCCAAATCCCACTTTCTTTCTTCTTTAATCTTTAGTTTTAAGACTCATAATGGCTGATTGGGGGCCGGTGATTATAGCGGTGGTGCTCTTCGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAAAGGAAGAGTTGTTGAATTCGGAAACATGCAGACTAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTTGGCCTCATCACTATCTTCCTCATCGCCATCGGTGTTCATATCTACACTGGCTAAAACCCAACTCCCCTCTTCTCTTTAATCTACTCTGTACTGCCTTTTCTTTCTCTTTCTTGTTCTATAATCGATGGATTGTTGTCTGTTATGTGACTTGTGACTTTTACTGTCTAGTTGGAGTTTCAACGATTGCGATTGTAAAATTGGTTTGATTTTAAACGCGATTTATAAATTGAATGGCTGCTGTTGGGTGTTGGGTGTTGGGTGTTTGGTACAGATTCAGGGAAAAAGATTCCGATATACGATTCCCATAGGGTTTATATGACCATTTACATCTGCTTTTACCGTTTCATTCTCTTTCTCGTCGTTTGGGTTTCGATGGCCCCCGCCACCGCTTCTGGGCGGTGGTAGTTCCCGTCGGTGCACGTGGACCCAATTGAAGGCGGCCCTACATTTACGTTTCTTTTTAACATTTGTTTAATTATAATTTGAGTCTTTTTTTCTTAGAAAAGAAAATTCGAGTATTTTGATAAAGGCGTTTCTTCGAAATAAGAAATAATAATAAATAAGGTGGTGGTTATTTTATTATTTTTTATTGAGAATCGAATTTTCACATTCTTTTAATTAAGTAAAAGAGAAAACAGAAGGGAGGAAGCTTTATGATGGTATGAAAATTCTATTTGGAAAGTTGATGTAATTATTCTAATTAAAATTGTAAGTGTTTAAATAATTCACGTATTTTAAAATGCTGTTCATCAAGTTGTGACGATAATATGATGATATTGTTTGGTCTAAAATAATAATAATTGATTTAGTTATTTGGTCATGTAGTCAATAAGTTGTGTTCTATGGCGTAACTTGCAAAGTTAATTCAAAGGCATGGATTGAACCAATTAAATGACTCATTTCTCAAATGTGTATAGAACGTGGAAAAGAAATACAAATTGATCTAAAAAAGAAAAGGAAAGAAAAAATAGAGCCTATTGGCTCTTGGTAAGCAAAATCAACAAATATTTCAACGTTATTTTTCAAAATTGTTTTGAATTTTTACAATCTAGATAGTGCAACTGCAACC

mRNA sequence

ATGGCTGATTGGGGGCCGGTGATTATAGCGGTGGTGCTCTTCGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAAAGGAAGAGTTGTTGAATTCGGAAACATGCAGACTAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTTGGCCTCATCACTATCTTCCTCATCGCCATCGGTGTTCATATCTACACTGGCTAA

Coding sequence (CDS)

ATGGCTGATTGGGGGCCGGTGATTATAGCGGTGGTGCTCTTCGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAAAGGAAGAGTTGTTGAATTCGGAAACATGCAGACTAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTTGGCCTCATCACTATCTTCCTCATCGCCATCGGTGTTCATATCTACACTGGCTAA

Protein sequence

MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIAIGVHIYTG*

Homology

[Close]

BLAST of CsaV3_1G000470 vs. NCBI nr
Match: XP_004138041.1 (uncharacterized protein LOC101212373 [Cucumis sativus] >XP_008464420.1 PREDICTED: uncharacterized protein LOC103502312 [Cucumis melo] >KAA0057764.1 putative transmembrane protein [Cucumis melo var. makuwa] >KGN63475.1 hypothetical protein Csa_013057 [Cucumis sativus] >TYJ98445.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 8.3e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. NCBI nr
Match: XP_040989914.1 (uncharacterized protein LOC121237293 isoform X4 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVI+AVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 1  MADWGPVIVAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. NCBI nr
Match: XP_040989912.1 (uncharacterized protein LOC121237293 isoform X2 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVI+AVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 1  MADWGPVIVAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. NCBI nr
Match: XP_022921425.1 (uncharacterized protein LOC111429708 [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
           MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+
Sbjct: 76  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 135

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 136 AIGVHIYTG 144

[Close]

BLAST of CsaV3_1G000470 vs. NCBI nr
Match: XP_022987136.1 (uncharacterized protein LOC111484778 [Cucurbita maxima])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. ExPASy TrEMBL
Match: A0A5A7URK5 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00460 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.0e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. ExPASy TrEMBL
Match: A0A0A0LNK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001470 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.0e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. ExPASy TrEMBL
Match: A0A1S3CLF1 (uncharacterized protein LOC103502312 OS=Cucumis melo OX=3656 GN=LOC103502312 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.0e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. ExPASy TrEMBL
Match: A0A6J1JDA3 (uncharacterized protein LOC111484778 OS=Cucurbita maxima OX=3661 GN=LOC111484778 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. ExPASy TrEMBL
Match: A0A6J1E5M1 (uncharacterized protein LOC111429708 OS=Cucurbita moschata OX=3662 GN=LOC111429708 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
           MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+
Sbjct: 76  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 135

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 136 AIGVHIYTG 144

[Close]

BLAST of CsaV3_1G000470 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-28
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPV+IAV+LFV+LSPGLLFQIPA GRVVEFGNMQTSGASILVHAII+FGLITIF I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI VHIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of CsaV3_1G000470 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 120.6 bits (301), Expect = 5.2e-28
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPV++AV+LFVLL+PGLLFQIPA+GRVVEFGNMQTSGASILVH II+FGLITIF I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of CsaV3_1G000470 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-22
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 2  ADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIA 61
          ADWGPVI+AV LF+LLSPGLLFQ+PA+ RV+EFGNM TSG SILVHAIIYF ++TI +IA
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 63 IQIHIH 68

[Close]

BLAST of CsaV3_1G000470 vs. TAIR 10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 3  DWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIAI 62
          DWGPVI+AV LF+LLSPGLLFQ+PA+ RVVEFGNM TSG +ILVHA IYF ++TI +IAI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 63 GVHIY 68
           +HI+
Sbjct: 64 QIHIH 68

[Close]

BLAST of CsaV3_1G000470 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-20
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2  ADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIA 61
          ADWGPV +AVVLFV+LSPGLLFQ+PA+ RV+E GNM TSG SILVHAI++F +ITI +IA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 64 IQIHIH 69

The following BLAST results are available for this feature:

BLAST of CsaV3_1G000470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138041.1	8.3e-28	100.00	uncharacterized protein LOC101212373 [Cucumis sativus] >XP_008464420.1 PREDICTED...	[more]
XP_040989914.1	1.1e-27	98.55	uncharacterized protein LOC121237293 isoform X4 [Juglans microcarpa x Juglans re...	[more]
XP_040989912.1	1.1e-27	98.55	uncharacterized protein LOC121237293 isoform X2 [Juglans microcarpa x Juglans re...	[more]
XP_022921425.1	2.4e-27	97.10	uncharacterized protein LOC111429708 [Cucurbita moschata]	[more]
XP_022987136.1	2.4e-27	97.10	uncharacterized protein LOC111484778 [Cucurbita maxima]	[more]

BLAST of CsaV3_1G000470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G000470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URK5	4.0e-28	100.00	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0LNK0	4.0e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001470 PE=4 SV=1	[more]
A0A1S3CLF1	4.0e-28	100.00	uncharacterized protein LOC103502312 OS=Cucumis melo OX=3656 GN=LOC103502312 PE=...	[more]
A0A6J1JDA3	1.2e-27	97.10	uncharacterized protein LOC111484778 OS=Cucurbita maxima OX=3661 GN=LOC111484778...	[more]
A0A6J1E5M1	1.2e-27	97.10	uncharacterized protein LOC111429708 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]

BLAST of CsaV3_1G000470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63500.1	4.0e-28	88.41	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	5.2e-28	85.51	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	4.3e-22	74.24	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.0e-20	72.31	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	1.8e-20	71.21	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 4.3E-37 score: 126.1
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF73	BNAA06G16390D PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G000470.1	CsaV3_1G000470.1	mRNA