CsaV3_1G000280 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G000280
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Exosome complex component RRP4-like protein
Location	chr1: 180489 .. 180640 (-)
RNA-Seq Expression	CsaV3_1G000280
Synteny	CsaV3_1G000280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCCGTGAAGAGATCAAAGAATGGCAACGAGGAAGAAACCTGAGGGAGGCAGGGAGTCAATCGGTCAAAGAAAGAAGCGAGGAAAATCTCAAATTGAGTGGGATGGTAAACCCTAACCCTAATCACCTCTCATCAGAAGCAAAGAG

mRNA sequence

ATGAAGTTCCGTGAAGAGATCAAAGAATGGCAACGAGGAAGAAACCTGAGGGAGGCAGGGAGTCAATCGGTCAAAGAAAGAAGCGAGGAAAATCTCAAATTGAGTGGGATGGTAAACCCTAACCCTAATCACCTCTCATCAGAAGCAAAGAG

Coding sequence (CDS)

ATGAAGTTCCGTGAAGAGATCAAAGAATGGCAACGAGGAAGAAACCTGAGGGAGGCAGGGAGTCAATCGGTCAAAGAAAGAAGCGAGGAAAATCTCAAATTGAGTGGGATGGTAAACCCTAACCCTAATCACCTCTCATCAGAAGCAAAGAG

Protein sequence

MKFREEIKEWQRGRNLREAGSQSVKERSEENLKLSGMVNPNPNHLSSEAKX

Homology

[Close]

BLAST of CsaV3_1G000280 vs. NCBI nr
Match: KAE8652376.1 (hypothetical protein Csa_013488, partial [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MKFREEIKEWQRGRNLREAGSQSVKERSEENLKLSGMVNPNPNHLSSEAK 51
          MKFREEIKEWQRGRNLREAGSQSVKERSEENLKLSGMVNPNPNHLSSEAK
Sbjct: 1  MKFREEIKEWQRGRNLREAGSQSVKERSEENLKLSGMVNPNPNHLSSEAK 50

[Close]

BLAST of CsaV3_1G000280 vs. NCBI nr
Match: TYJ98430.1 (exosome complex component RRP4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1  MKFREEIKEWQRGRNLREAGSQSVKERSEENLKLSGMVNPNPNHLSSEAK 51
          MKFR EIKEWQR RN REAG Q V+ERSEENLKLSG  NPNPNH++SE K
Sbjct: 1  MKFRAEIKEWQRRRNPREAGKQWVQERSEENLKLSGKENPNPNHVTSEGK 50

[Close]

BLAST of CsaV3_1G000280 vs. ExPASy TrEMBL
Match: A0A5D3BF59 (Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00280 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1  MKFREEIKEWQRGRNLREAGSQSVKERSEENLKLSGMVNPNPNHLSSEAK 51
          MKFR EIKEWQR RN REAG Q V+ERSEENLKLSG  NPNPNH++SE K
Sbjct: 1  MKFRAEIKEWQRRRNPREAGKQWVQERSEENLKLSGKENPNPNHVTSEGK 50

The following BLAST results are available for this feature:

BLAST of CsaV3_1G000280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652376.1	1.7e-17	100.00	hypothetical protein Csa_013488, partial [Cucumis sativus]	[more]
TYJ98430.1	8.8e-11	78.00	exosome complex component RRP4-like protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G000280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G000280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BF59	4.3e-11	78.00	Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CsaV3_1G000280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G000280.1	CsaV3_1G000280.1	mRNA