CsGy7G020805 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G020805
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPhosphoribosylglycinamide formyltransferase
LocationGy14Chr7: 23107160 .. 23107748 (-)
RNA-Seq ExpressionCsGy7G020805
SyntenyCsGy7G020805
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTAATAATTGGTAAGTTCTTTCTAACAAATCAAATCCCACTGTAAAATTTTATAGGTTGAATTGATGAGAAAATTTTATAACCAACTTTATTTTGATAATGATTTAAAATTTTATTAAGAGATGGAATTTTATGTTTTATTTTATTAAAAAACAACAATAATAAGGGGAAAGGTCTAAACTCTCTTCTTCTCTTCTCAGTTCTTTTTCGAGAGCATTCTTCTTCTTCTTGGTGAAAGCAGACGCCCCCTCTCTCGACTTCTCTTCAGCTCACTATCTCTCGCACACCGGCTACGGCATAGATTTCCGTCAACAACCTGCCGAAAACCCCAACCCGATTTTCCCTCGCGCTTACCGTCTCCCTATCTCCTCCAGCCGACGTCATCACCTGCGGACTGGCATTGCGCCGTTCGACTCTCTTTCTCCTTGCGCCGCGCTCAAGAGTTCTCCGCCGTCGCATCAAACTCAGGAATCTGGCAGTAGCTTAGTTGTTCGCTCGCGTTGTGAAGTTCTTGTTTCATATTTGTCTTGTACGGCAGCTGTGAATACCGTGGCTCCGCCGTTCTCAGCTAAATTTTGGCTTTGA

mRNA sequence

ATGAGTTCTTTTTCGAGAGCATTCTTCTTCTTCTTGGTGAAAGCAGACGCCCCCTCTCTCGACTTCTCTTCAGCTCACTATCTCTCGCACACCGGCTACGGCATAGATTTCCGTCAACAACCTGCCGAAAACCCCAACCCGATTTTCCCTCGCGCTTACCGTCTCCCTATCTCCTCCAGCCGACGTCATCACCTGCGGACTGGCATTGCGCCGTTCGACTCTCTTTCTCCTTGCGCCGCGCTCAAGAGTTCTCCGCCGTCGCATCAAACTCAGGAATCTGGCAGTAGCTTAGTTGTTCGCTCGCGTTGTGAAGTTCTTGTTTCATATTTGTCTTGTACGGCAGCTGTGAATACCGTGGCTCCGCCGTTCTCAGCTAAATTTTGGCTTTGA

Coding sequence (CDS)

ATGAGTTCTTTTTCGAGAGCATTCTTCTTCTTCTTGGTGAAAGCAGACGCCCCCTCTCTCGACTTCTCTTCAGCTCACTATCTCTCGCACACCGGCTACGGCATAGATTTCCGTCAACAACCTGCCGAAAACCCCAACCCGATTTTCCCTCGCGCTTACCGTCTCCCTATCTCCTCCAGCCGACGTCATCACCTGCGGACTGGCATTGCGCCGTTCGACTCTCTTTCTCCTTGCGCCGCGCTCAAGAGTTCTCCGCCGTCGCATCAAACTCAGGAATCTGGCAGTAGCTTAGTTGTTCGCTCGCGTTGTGAAGTTCTTGTTTCATATTTGTCTTGTACGGCAGCTGTGAATACCGTGGCTCCGCCGTTCTCAGCTAAATTTTGGCTTTGA

Protein sequence

MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSSRRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVAPPFSAKFWL*
Homology
[Close]
BLAST of CsGy7G020805 vs. NCBI nr
Match: KGN45489.1 (hypothetical protein Csa_015933 [Cucumis sativus])

HSP 1 Score: 261 bits (667), Expect = 7.07e-88
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS 60
           MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS
Sbjct: 1   MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS 60

Query: 61  RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA 120
           RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA
Sbjct: 61  RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA 120

Query: 121 PPFSAKFWL 129
           PPFSAKFWL
Sbjct: 121 PPFSAKFWL 129

[Close]
BLAST of CsGy7G020805 vs. NCBI nr
Match: KAA0059399.1 (phosphoribosylglycinamide formyltransferase [Cucumis melo var. makuwa] >TYK03928.1 phosphoribosylglycinamide formyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 4.21e-13
Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 85  PPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVAPPFSAKFWL 129
           PPSHQT ESG SLVVRSR EVLVSYLSCTAA NTV P FSAK WL
Sbjct: 93  PPSHQTHESGRSLVVRSRREVLVSYLSCTAAANTVPPLFSAKLWL 137

[Close]
BLAST of CsGy7G020805 vs. ExPASy TrEMBL
Match: A0A0A0K9H2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450480 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 3.43e-88
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS 60
           MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS
Sbjct: 1   MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS 60

Query: 61  RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA 120
           RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA
Sbjct: 61  RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA 120

Query: 121 PPFSAKFWL 129
           PPFSAKFWL
Sbjct: 121 PPFSAKFWL 129

[Close]
BLAST of CsGy7G020805 vs. ExPASy TrEMBL
Match: A0A5D3BY35 (Phosphoribosylglycinamide formyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001250 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.04e-13
Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 85  PPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVAPPFSAKFWL 129
           PPSHQT ESG SLVVRSR EVLVSYLSCTAA NTV P FSAK WL
Sbjct: 93  PPSHQTHESGRSLVVRSRREVLVSYLSCTAAANTVPPLFSAKLWL 137

[Close]
BLAST of CsGy7G020805 vs. ExPASy TrEMBL
Match: A0A5A7TNM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001040 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 8.64e-04
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0 

Query: 96  SLVVRSRCEVLVSYLSCTAAVNTVAPPFSAKF 127
           S  +R  C+V+VSYLSCTA +N VAPPFS  F
Sbjct: 24  SFSLRGYCKVIVSYLSCTATINIVAPPFSLNF 55

[Close]
BLAST of CsGy7G020805 vs. ExPASy TrEMBL
Match: A0A5D3CDV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001210 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 8.64e-04
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0 

Query: 96  SLVVRSRCEVLVSYLSCTAAVNTVAPPFSAKF 127
           S  +R  C+V+VSYLSCTA +N VAPPFS  F
Sbjct: 24  SFSLRGYCKVIVSYLSCTATINIVAPPFSLNF 55

The following BLAST results are available for this feature:
BLAST of CsGy7G020805 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy7G020805 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45489.17.07e-88100.00hypothetical protein Csa_015933 [Cucumis sativus][more]
KAA0059399.14.21e-1384.44phosphoribosylglycinamide formyltransferase [Cucumis melo var. makuwa] >TYK03928... [more]
BLAST of CsGy7G020805 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9H23.43e-88100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450480 PE=4 SV=1[more]
A0A5D3BY352.04e-1384.44Phosphoribosylglycinamide formyltransferase OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7TNM38.64e-0462.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CDV08.64e-0462.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsGy7G020805 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G020805.1CsGy7G020805.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006189 'de novo' IMP biosynthetic process
molecular_function GO:0004644 phosphoribosylglycinamide formyltransferase activity