CsGy7G019170 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G019170
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionHistone H2A
LocationGy14Chr7: 21851262 .. 21855509 (+)
RNA-Seq ExpressionCsGy7G019170
SyntenyCsGy7G019170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGTTATCGAGAGAGAAAGGGTTGTGGGCATTACTTTTATGTGCCTCGCTTCCCGTCGTTCCTTATCGGTTCTCTTTCCTTTCTCTTCCAAACAATCTTCCAATACTCCTTCTTCCACTCCAACAGAAGAGCAACCCTATTTTCTTTTGCCTCCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCGCCAACAACAAGGACAAGGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTTCAGGTCTCCTTCTTTCCTTTTTACTCTTCTTCACTTGTTTTTCCGCTTTCCTTTTCTGGGTCCTCTCTGGATCTGTGTTTCTTTTGCTTCTTTCAGGTTTATGCCTCTTTTTCTCCAACAAACCCACGATTTTTTTTAAAATTTAGATTCGTTTTTTGTGTTTGGACATTGGGTGTTGGGGATGTGGGGGTAATTTAAATTACGTCTTTGAGTGTTTATATTTGTTTATTACAGATGGGTCCTCTTTCTGTTTCCTTGTTTCTTGTTCTTTCGTTTCTCTTCGAGGGTTTTGGTGGTTTCTAAGTTTGTTTGTTTCGTTGTGGGTTCTGCTCTGTATGAGATCGAGTGGTGATGAATATTTAGGAGGTGTTCGTTTGTGAATCTTTGGAGGGGTAGCTCTAAGTTATTCTCTTTAATCTTAGAAGTAGATGCATGTATTTGGGTCTGTTCTATTTTTAATGTGTTGCTATGATCCTCCTTTAAGCAGGTCTGTGATTCTTTTGTGAGTCTCGGTTTGTTAATGTTCTTCGTGGTTGGAGAAATAGATTATTTTGTTGAGGTAATGTATTGGGTAGAAAGAAAGAACCATGTTAGACTTAGCTTAGGCTGATATGGTTTTACTTATAATTTCCCAATTAAGGTTGGCACCAGTGTGTGAAGCATGCATCCAAGATCAGTTTTTCGTGCTATAGAAGTTGTCTGTCAAAAGATGTTAGTGAAGGTGAATTGGGATTTGACCATTTTTATGTCTAGATATTTCCCAATCACAATTCAATGGTTCCCAGTTCTTGAGGCATTTAGATAGATAACTTATTCGTTTACATGTTGCGAAGTCTCTTCCCTATTGTTAGAGTGACAGAAACTAGGACATTGATCCAATAGTTGTATTAGAAACTTTAAAACATTAAGTACCTACATCATCCTAAGTAGTTCGAGTAACTAAGGACAATGCTTAACCACCGTATACATAGGTATATTTAACGTTTATCTTGTGTGATAGGTAATACATATTATACTCGAGGTGGGTTTGACCACTAGATTCTCATGTTGATAAATTTTAAAAACATTTATGGAGTGGCAATAAGTTTTTCTCCCATCTCTTCCTTTTCCACTCTTTCTTTTTGTAACAAAATTCAAGTCACTCCTCAAGTCCATGGGCACACTCCTAGATATTTGATACCTGGTTGACTGTAGCTAATAACCTGTCACAAATAAAAGCTCAGCCCATAGCTTAGTTTGTATAACATCTGACCCTAGAACTCTTCACAACCGTGATACCTGAATTATTTACTTCTATTGGTGGAAAATGAGTCTCAACAATTCTGTTAAAATTTGGCCCTATGGGGCGATGTTTGGGTCCTGAATATCACTTGTCAAGACCCTACTATTAACCTACCAATAGATTGTGCCCTTACTTGGTTACTACAGCATCGATGATGTATTGGTTAGCTGTCTGGCCTACTCACTTTTTTTTTCTTCTCGCTCCATTTCTATATCATATTCCTCTCTGAAACTCGCAAGTTATGTATCCCGTTTAAATAAAGGGCCGGTTTCTTTTACCTCTCTTCCTTTATGATTTTATTTCCAAACATACCTTGTGTCACTTCGTGCAGACATCCTTTGGATCTATTCTCATTTTCATTGACCATTTGTCTTACTTCTATTGCATTCCTTTTTTTCACTATGTGTGCTGAATTGGACATCCGTTGCCTGCCACGCCACCCCTCCTGCCTTTCACATTGTTGCTACATGGTATGAATCTGTATTTTCTTTGCTTGGTATGTACAGCTTTTGGACTCTTTCTTATGGTGGATTTTACTATTTAAAGGAAAATTATCTTGAATTTGATATGAGCAAGACATTTTTATTGTGTCTCTATAAGTGATTCTTCTGGTAGGTGGCTTCTTTGGCCATCTTGTGGACATTCTTGCTCTAAGGGAACTTCAAAGACAATAAATTTTAAGGTAGGACAAGTGGGGTCATGAGGCATTGATCTTTAGCTTGTGCTGCCCCGTAAGCCAACTTCTTATTCTTTATTTTATCTCTGAATATGGGGTGGAAAATAGGTTGTGTAGAGATGTCTGTCATGGTATAAGTTAACTGGTGCCTACTGCCTGGTGGGTTTTATCACTGCCTAACAGAACTTTCTTTCAAGTTTCAATCAGGTGAGGATGGCCAAGGTCTAATAGAGTGCCCCAGTTTTATTACGAGACCCTTTTATTTTGCTTTGATAATGAAGTTAAGCATCAATAGGGATTTCAGAGCATGTTCAATATTTTGCAAGAACTTCGTTAGATTAGGGGATGCTCCACTTCTTTGTAGACAATACTTTCTGTTATTTATTGCCTGGAACACTCCAAATCTTCCATGCAAAGCTTTTTTTCTGCAAATGACCTATTGGGGTTATCCAGAATTTATGTGAACCTAGCGACTCATGGAGATGTAGGCTGTTTTAACCAATATGCCTGTACACTGCCTCTTTTTATAAATTCTCTACTACCACAGCGTTGATTGAATAAGTGGAACTTTTAATAGGAAGGTCTGTATCCGGATGGAGAAACTTGTCTCCTATTTATTTGGATTTGGGTGGTCTTGAAATTGGAATTTTGAGCTAAAAAAAATATAGCTTTGATTTGTAACGGTTGTGAAGATATTTGGTAGAATAACAGAATTATGGCATAAGATCATCGATGATAACTATATGACCAGATATCTTTTGGGTAGTTTATTAACAACTAACAACAGTGGTGGACTTGTTGATGTTTGTCATTTAGTCACCAGTTGTAAAAAAACTAAGACTGGAGTCTTAAGTTTTGTATGGACTTCTATAGAAAAGAACATTTTTTAATAGTCAAAACTCTTTGCGATGAATATCAGATTTTTGTGTGTTCTACTACATCAATGAGAAGAGTCTCTATCTTCATTCCAGTTGATGGGAGGATCTCATTCATTTTTTTTGGCGGTAATATCTTGATTCCAATGAGGAAGGAGCTATTGTTGCATATTGCATATAATACTACATCTATATCCATATGCCTTAAATGAATTATGCGGCTCATTTTTTCTTGTTTCCTTCTTCTCTTCATAACTTTTGATGGACTGTGTAATAGAATGTCACTGGGAAAGAGGAGTGTGGTTCTCTGGTAGATGCCTCAATTCTCAAGTCCTTCCTGTATATCATTTTCCATGTATTGGTTTTGATGTTTTCTTTTCAAGGTTGTCCGTAGCTTCTACTTTTATTAAGAATCACAAGGCATAAATTCCAAGTCTTTGAGATGACTTTTGGAACATTTTTATTTGAAGTAATTTTTCTACAAGATATCATCAAATTTTGGGAGTGTTATTTAAAATTTCATATTTTTCTCATTGTTATTATGCCGTTGAATGGCTGGATGATGCAGTTTCCAGTGGGAAGGGTCCATCGGCAACTGAAGTCGAGGGTTGCTGCCAATGGACGAGTTGGAGCTACAGCAGCCGTATACACAGCCGCAATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTTGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATTCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAGGCTTGATCTGTTTTTTATCTTCATCTTACAGTTTAGTTGAGTGGTTGCTTGTCATATGCTCAGTCATGTCATTGTCTGGTCTAATTTAGTAGTGTCATATTATCAAATTCTACTTTTGTGATGATTACTTCTATCCATTGAGTAGTAGGGGGAGGAGATAAGAAGATATTTCTCGTTTTGTAAGTTTTAAGATGGTAAATCATTTTCATCTTTAGTAATTTCTGACTCTGGGATTGCTTTGACACTGTCAAATTTACTTACCTGTCAATGTAATTGATGACTTCGCAT

mRNA sequence

GAGTTATCGAGAGAGAAAGGGTTGTGGGCATTACTTTTATGTGCCTCGCTTCCCGTCGTTCCTTATCGGTTCTCTTTCCTTTCTCTTCCAAACAATCTTCCAATACTCCTTCTTCCACTCCAACAGAAGAGCAACCCTATTTTCTTTTGCCTCCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCGCCAACAACAAGGACAAGGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTTCAGGTCTCCTTCTTTCCTTTTTACTCTTCTTCACTTGTTTTTCCGCTTTCCTTTTCTGGGTCCTCTCTGGATCTGTGTTTCTTTTGCTTCTTTCAGGTTTATGCCTCTTTTTCTCCAACAAACCCACGATTTTTTTTAAAATTTAGATTCGTTTTTTGTGTTTGGACATTGGGTGTTGGGGATGTGGGGGTAATTTAAATTACGTCTTTGAGTGTTTATATTTGTTTATTACAGATGGGTCCTCTTTCTGTTTCCTTGTTTCTTGTTCTTTCGTTTCTCTTCGAGGGTTTTGGTGGTTTCTAAGTTTGTTTGTTTCGTTGTGGGTTCTGCTCTGTATGAGATCGAGTGGTGATGAATATTTAGGAGGTGTTCGTTTGTGAATCTTTGGAGGGGTAGCTCTAAGTTATTCTCTTTAATCTTAGAAGTAGATGCATGTATTTGGGTCTGTTCTATTTTTAATGTGTTGCTATGATCCTCCTTTAAGCAGGTCTGTGATTCTTTTGTGAGTCTCGGTTTGTTAATGTTCTTCGTGGTTGGAGAAATAGATTATTTTGTTGAGGTAATGTATTGGGTAGAAAGAAAGAACCATGTTAGACTTAGCTTAGGCTGATATGGTTTTACTTATAATTTCCCAATTAAGGTTGGCACCAGTGTGTGAAGCATGCATCCAAGATCAGTTTTTCGTGCTATAGAAGTTGTCTGTCAAAAGATGTTAGTGAAGGTGAATTGGGATTTGACCATTTTTATGTCTAGATATTTCCCAATCACAATTCAATGGTTCCCAGTTCTTGAGGCATTTAGATAGATAACTTATTCGTTTACATGTTGCGAAGTCTCTTCCCTATTGTTAGAGTGACAGAAACTAGGACATTGATCCAATAGTTGTATTAGAAACTTTAAAACATTAAGTACCTACATCATCCTAAGTAGTTCGAGTAACTAAGGACAATGCTTAACCACCGTATACATAGGTATATTTAACGTTTATCTTGTGTGATAGGTAATACATATTATACTCGAGGTGGGTTTGACCACTAGATTCTCATGTTGATAAATTTTAAAAACATTTATGGAGTGGCAATAAGTTTTTCTCCCATCTCTTCCTTTTCCACTCTTTCTTTTTGTAACAAAATTCAAGTCACTCCTCAAGTCCATGGGCACACTCCTAGATATTTGATACCTGGTTGACTGTAGCTAATAACCTGTCACAAATAAAAGCTCAGCCCATAGCTTAGTTTGTATAACATCTGACCCTAGAACTCTTCACAACCGTGATACCTGAATTATTTACTTCTATTGGTGGAAAATGAGTCTCAACAATTCTGTTAAAATTTGGCCCTATGGGGCGATGTTTGGGTCCTGAATATCACTTGTCAAGACCCTACTATTAACCTACCAATAGATTGTGCCCTTACTTGGTTACTACAGCATCGATGATGTATTGGTTAGCTGTCTGGCCTACTCACTTTTTTTTTCTTCTCGCTCCATTTCTATATCATATTCCTCTCTGAAACTCGCAAGTTATGTATCCCGTTTAAATAAAGGGCCGGTTTCTTTTACCTCTCTTCCTTTATGATTTTATTTCCAAACATACCTTGTGTCACTTCGTGCAGACATCCTTTGGATCTATTCTCATTTTCATTGACCATTTGTCTTACTTCTATTGCATTCCTTTTTTTCACTATGTGTGCTGAATTGGACATCCGTTGCCTGCCACGCCACCCCTCCTGCCTTTCACATTGTTGCTACATGTTTCCAGTGGGAAGGGTCCATCGGCAACTGAAGTCGAGGGTTGCTGCCAATGGACGAGTTGGAGCTACAGCAGCCGTATACACAGCCGCAATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTTGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATTCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAGGCTTGATCTGTTTTTTATCTTCATCTTACAGTTTAGTTGAGTGGTTGCTTGTCATATGCTCAGTCATGTCATTGTCTGGTCTAATTTAGTAGTGTCATATTATCAAATTCTACTTTTGTGATGATTACTTCTATCCATTGAGTAGTAGGGGGAGGAGATAAGAAGATATTTCTCGTTTTGTAAGTTTTAAGATGGTAAATCATTTTCATCTTTAGTAATTTCTGACTCTGGGATTGCTTTGACACTGTCAAATTTACTTACCTGTCAATGTAATTGATGACTTCGCAT

Coding sequence (CDS)

ATGATTTTATTTCCAAACATACCTTGTGTCACTTCGTGCAGACATCCTTTGGATCTATTCTCATTTTCATTGACCATTTGTCTTACTTCTATTGCATTCCTTTTTTTCACTATGTGTGCTGAATTGGACATCCGTTGCCTGCCACGCCACCCCTCCTGCCTTTCACATTGTTGCTACATGTTTCCAGTGGGAAGGGTCCATCGGCAACTGAAGTCGAGGGTTGCTGCCAATGGACGAGTTGGAGCTACAGCAGCCGTATACACAGCCGCAATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTTGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATTCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Protein sequence

MILFPNIPCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE*
Homology
[Close]
BLAST of CsGy7G019170 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.5e-46
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLK RV+ANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 42  FPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 101

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 102 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of CsGy7G019170 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 7.2e-46
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLK R  ANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 40  FPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 99

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 100 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137

[Close]
BLAST of CsGy7G019170 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-45
Identity = 92/98 (93.88%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLKSR +A+GRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 41  FPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 100

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct: 101 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138

[Close]
BLAST of CsGy7G019170 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.6e-45
Identity = 91/98 (92.86%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLK+RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]
BLAST of CsGy7G019170 vs. ExPASy Swiss-Prot
Match: Q9SII0 (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]
BLAST of CsGy7G019170 vs. NCBI nr
Match: XP_031744223.1 (probable histone H2A variant 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 314 bits (804), Expect = 7.95e-108
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MILFPNIPCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLPRHPSCLSHCCYM 60
           MILFPNIPCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLPRHPSCLSHCCYM
Sbjct: 1   MILFPNIPCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLPRHPSCLSHCCYM 60

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158

[Close]
BLAST of CsGy7G019170 vs. NCBI nr
Match: XP_037403868.1 (probable histone H2A variant 3 [Triticum dicoccoides])

HSP 1 Score: 189 bits (480), Expect = 3.66e-59
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 52  SCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLK 111
           +CL  C   FPVGR+HRQLK RV+ANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLK
Sbjct: 2   TCLCVCTMQFPVGRIHRQLKQRVSANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 61

Query: 112 VKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           VKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct: 62  VKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 108

[Close]
BLAST of CsGy7G019170 vs. NCBI nr
Match: TYI89613.1 (hypothetical protein E1A91_D03G068200v1 [Gossypium mustelinum])

HSP 1 Score: 189 bits (479), Expect = 5.53e-59
Identity = 96/101 (95.05%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 58  CYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITP 117
           C++FPVGRVHR LK+RV+ANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITP
Sbjct: 10  CHLFPVGRVHRLLKTRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITP 69

Query: 118 RHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           RHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 70  RHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 110

[Close]
BLAST of CsGy7G019170 vs. NCBI nr
Match: XP_031406453.1 (probable histone H2A variant 3 [Punica granatum] >OWM81812.1 hypothetical protein CDL15_Pgr007850 [Punica granatum] >PKI43477.1 hypothetical protein CRG98_036234 [Punica granatum])

HSP 1 Score: 189 bits (480), Expect = 7.90e-59
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 35  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 94

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 95  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 132

[Close]
BLAST of CsGy7G019170 vs. NCBI nr
Match: GAV69172.1 (Histone domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 189 bits (480), Expect = 8.42e-59
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 37  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 96

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 97  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134

[Close]
BLAST of CsGy7G019170 vs. ExPASy TrEMBL
Match: A0A5D2VJF5 (Histone H2A OS=Gossypium mustelinum OX=34275 GN=E1A91_D03G068200v1 PE=3 SV=1)

HSP 1 Score: 189 bits (479), Expect = 2.68e-59
Identity = 96/101 (95.05%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 58  CYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITP 117
           C++FPVGRVHR LK+RV+ANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITP
Sbjct: 10  CHLFPVGRVHRLLKTRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITP 69

Query: 118 RHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           RHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 70  RHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 110

[Close]
BLAST of CsGy7G019170 vs. ExPASy TrEMBL
Match: A0A218XBS8 (Histone H2A OS=Punica granatum OX=22663 GN=LOC116215033 PE=3 SV=1)

HSP 1 Score: 189 bits (480), Expect = 3.82e-59
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 35  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 94

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 95  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 132

[Close]
BLAST of CsGy7G019170 vs. ExPASy TrEMBL
Match: A0A5D3CH66 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 PE=3 SV=1)

HSP 1 Score: 189 bits (480), Expect = 4.08e-59
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 37  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 96

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 97  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134

[Close]
BLAST of CsGy7G019170 vs. ExPASy TrEMBL
Match: A0A059AJB9 (Histone H2A OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03033 PE=3 SV=1)

HSP 1 Score: 189 bits (480), Expect = 4.08e-59
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 37  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 96

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 97  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134

[Close]
BLAST of CsGy7G019170 vs. ExPASy TrEMBL
Match: A0A0A0K6F6 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G433390 PE=3 SV=1)

HSP 1 Score: 189 bits (480), Expect = 4.08e-59
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 37  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 96

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 158
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct: 97  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134

[Close]
BLAST of CsGy7G019170 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-46
Identity = 91/98 (92.86%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLK+RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]
BLAST of CsGy7G019170 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 180.6 bits (457), Expect = 9.6e-46
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]
BLAST of CsGy7G019170 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 180.6 bits (457), Expect = 9.6e-46
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]
BLAST of CsGy7G019170 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 180.6 bits (457), Expect = 9.6e-46
Identity = 89/98 (90.82%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]
BLAST of CsGy7G019170 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 179.5 bits (454), Expect = 2.1e-45
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 0 

Query: 61  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 120
           FPVGRVHR LK+R  A+GRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHL
Sbjct: 37  FPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHL 96

Query: 121 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 159
           QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKS+KE
Sbjct: 97  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134

The following BLAST results are available for this feature:
BLAST of CsGy7G019170 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S8572.5e-4694.90Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g... [more]
Q84MP77.2e-4694.90Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
Q8H7Y81.2e-4593.88Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
O236281.6e-4592.86Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1[more]
Q9SII01.4e-4490.82Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2... [more]
BLAST of CsGy7G019170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031744223.17.95e-108100.00probable histone H2A variant 3 isoform X1 [Cucumis sativus][more]
XP_037403868.13.66e-5989.72probable histone H2A variant 3 [Triticum dicoccoides][more]
TYI89613.15.53e-5995.05hypothetical protein E1A91_D03G068200v1 [Gossypium mustelinum][more]
XP_031406453.17.90e-59100.00probable histone H2A variant 3 [Punica granatum] >OWM81812.1 hypothetical protei... [more]
GAV69172.18.42e-59100.00Histone domain-containing protein [Cephalotus follicularis][more]
BLAST of CsGy7G019170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D2VJF52.68e-5995.05Histone H2A OS=Gossypium mustelinum OX=34275 GN=E1A91_D03G068200v1 PE=3 SV=1[more]
A0A218XBS83.82e-59100.00Histone H2A OS=Punica granatum OX=22663 GN=LOC116215033 PE=3 SV=1[more]
A0A5D3CH664.08e-59100.00Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 P... [more]
A0A059AJB94.08e-59100.00Histone H2A OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03033 PE=3 SV=1[more]
A0A0A0K6F64.08e-59100.00Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G433390 PE=3 SV=1[more]
BLAST of CsGy7G019170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G54560.11.1e-4692.86histone H2A 11 [more]
AT2G38810.19.6e-4690.82histone H2A 8 [more]
AT2G38810.39.6e-4690.82histone H2A 8 [more]
AT2G38810.29.6e-4690.82histone H2A 8 [more]
AT1G52740.12.1e-4592.86histone H2A protein 9 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 79..94
score: 71.55
coord: 108..122
score: 65.78
coord: 94..107
score: 84.63
coord: 49..71
score: 41.61
coord: 135..153
score: 51.98
IPR002119Histone H2ASMARTSM00414h2a4coord: 40..158
e-value: 7.4E-54
score: 194.9
IPR002119Histone H2ACDDcd00074H2Acoord: 61..154
e-value: 7.9644E-57
score: 171.749
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 59..127
e-value: 2.5E-17
score: 63.5
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 128..157
e-value: 1.1E-10
score: 41.1
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 49..158
e-value: 1.2E-47
score: 162.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 60..135
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 52..156
NoneNo IPR availablePANTHERPTHR23430:SF300HISTONE H2Acoord: 52..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G019170.2CsGy7G019170.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0009266 response to temperature stimulus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity