CsGy7G018617 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G018617
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
LocationGy14Chr7: 21567288 .. 21567581 (+)
RNA-Seq ExpressionCsGy7G018617
SyntenyCsGy7G018617
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATAAGGGAGTTGCAAAAGAACCAGGAGTCAGTTGGATTCAGATGAAGTGCAGGGTACACTACTTTCTTACCAAGGACGATTGTCATGACAAGATTGAAGGTGATTCATTCATGCTTGAAGGAGTTGTTAAAACATCTCACCATGGCAGGTTATGTCAGATACAAATTTTATGCTCCATAATGTGGAAGAAGATTAAAAACAAAATAAGCTTCTGTACCATTGTGAGAAGCTTGCCGTTGCTTATGGGATCTTGCACACACCAAACAAGATGCCAATTGAAATCATGA

mRNA sequence

ATGAAAGATAAGGGAGTTGCAAAAGAACCAGGAGTCAGTTGGATTCAGATGAAGTGCAGGGTACACTACTTTCTTACCAAGGACGATTGTCATGACAAGATTGAAGGTGATTCATTCATGCTTGAAGGAGTTGTTAAAACATCTCACCATGGCAGGTTATGTCAGATACAAATTTTATGCTCCATAATGTGGAAGAAGATTAAAAACAAAATAAGCTTCTGTACCATTGTGAGAAGCTTGCCGTTGCTTATGGGATCTTGCACACACCAAACAAGATGCCAATTGAAATCATGA

Coding sequence (CDS)

ATGAAAGATAAGGGAGTTGCAAAAGAACCAGGAGTCAGTTGGATTCAGATGAAGTGCAGGGTACACTACTTTCTTACCAAGGACGATTGTCATGACAAGATTGAAGGTGATTCATTCATGCTTGAAGGAGTTGTTAAAACATCTCACCATGGCAGGTTATGTCAGATACAAATTTTATGCTCCATAATGTGGAAGAAGATTAAAAACAAAATAAGCTTCTGTACCATTGTGAGAAGCTTGCCGTTGCTTATGGGATCTTGCACACACCAAACAAGATGCCAATTGAAATCATGA

Protein sequence

MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILCSIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS*
Homology
BLAST of CsGy7G018617 vs. NCBI nr
Match: KGN45242.1 (hypothetical protein Csa_015822 [Cucumis sativus])

HSP 1 Score: 209 bits (533), Expect = 1.84e-68
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC 60
          MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC
Sbjct: 1  MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC 60

Query: 61 SIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS 97
          SIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS
Sbjct: 61 SIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS 97

BLAST of CsGy7G018617 vs. NCBI nr
Match: KAG6593380.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 3.17e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIE 35
           MK+K VAKEPG SWIQ++CRVHYFLTKDD HD+IE
Sbjct: 770 MKNKEVAKEPGASWIQIRCRVHYFLTKDDSHDEIE 804

BLAST of CsGy7G018617 vs. NCBI nr
Match: KAG7025727.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 3.19e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIE 35
           MK+K VAKEPG SWIQ++CRVHYFLTKDD HD+IE
Sbjct: 846 MKNKEVAKEPGASWIQIRCRVHYFLTKDDSHDEIE 880

BLAST of CsGy7G018617 vs. NCBI nr
Match: XP_023515085.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 4.34e-10
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIE 35
           MK+K VAKEPG SWIQ++CR+HYFLTKDD HD+IE
Sbjct: 770 MKNKEVAKEPGASWIQIRCRIHYFLTKDDSHDEIE 804

BLAST of CsGy7G018617 vs. NCBI nr
Match: XP_022960219.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 4.34e-10
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIE 35
           MK+K VAKEPG SWIQ++CR+HYFLTKDD HD+IE
Sbjct: 770 MKNKEVAKEPGASWIQIRCRIHYFLTKDDSHDEIE 804

BLAST of CsGy7G018617 vs. ExPASy TrEMBL
Match: A0A0A0KA26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432230 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 8.91e-69
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC 60
          MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC
Sbjct: 1  MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC 60

Query: 61 SIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS 97
          SIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS
Sbjct: 61 SIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS 97

BLAST of CsGy7G018617 vs. ExPASy TrEMBL
Match: A0A6J1HAB1 (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita moschata OX=3662 GN=LOC111461023 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.10e-10
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIE 35
           MK+K VAKEPG SWIQ++CR+HYFLTKDD HD+IE
Sbjct: 770 MKNKEVAKEPGASWIQIRCRIHYFLTKDDSHDEIE 804

BLAST of CsGy7G018617 vs. ExPASy TrEMBL
Match: A0A6J1KVF3 (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita maxima OX=3661 GN=LOC111497943 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.36e-09
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIE 35
           MK+K VAKEPG SWIQ++CR+HYF+TKDD HD+I+
Sbjct: 770 MKNKEVAKEPGASWIQIRCRIHYFITKDDSHDEIK 804

BLAST of CsGy7G018617 vs. ExPASy TrEMBL
Match: A0A6J1D5R5 (pentatricopeptide repeat-containing protein At4g02750-like OS=Momordica charantia OX=3673 GN=LOC111017187 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.07e-08
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVK 46
           M +KGV KEPG+SWIQ+K RVH+FLTKDD HD+I      L+ ++K
Sbjct: 770 MINKGVTKEPGISWIQIKGRVHFFLTKDDSHDEIGEIHSCLKALLK 815

BLAST of CsGy7G018617 vs. ExPASy TrEMBL
Match: A0A5N5G813 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019525 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.94e-07
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIE 35
           MKD+GV KEPG SWIQMK +VHYFL  D  HD I+
Sbjct: 763 MKDRGVTKEPGFSWIQMKNKVHYFLMGDKAHDNIK 797

BLAST of CsGy7G018617 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 19/46 (41.30%), Postives = 27/46 (58.70%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVK 47
           M+D+GV KE   SWI+M+ +VH FL  D  H + E     L+ + K
Sbjct: 646 MRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGK 691

BLAST of CsGy7G018617 vs. TAIR 10
Match: AT2G03880.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 15/34 (44.12%), Postives = 25/34 (73.53%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKI 35
           M+D+G+ KEPG SWI++  ++H F+  D+ H +I
Sbjct: 487 MRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQI 520

BLAST of CsGy7G018617 vs. TAIR 10
Match: AT5G39680.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 17/34 (50.00%), Postives = 25/34 (73.53%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKI 35
           M ++GV KEPGVSWI ++ + H FL +D+ H +I
Sbjct: 567 MNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEI 600

BLAST of CsGy7G018617 vs. TAIR 10
Match: AT1G15510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 22/74 (29.73%), Postives = 38/74 (51.35%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC 60
           MK+ G+  + G SW+++K +VH FL+ D  H + +  + +LEG  +      L +I    
Sbjct: 725 MKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESS 784

Query: 61  SIMWKKIKNKISFC 75
           S+   +I     FC
Sbjct: 785 SMDETEISRDEIFC 798

BLAST of CsGy7G018617 vs. TAIR 10
Match: AT3G57430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.5e-04
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 0

Query: 1   MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLE 43
           MK++GV KEPG SWI+    VH F+  D  H + E  S  LE
Sbjct: 747 MKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLE 788

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN45242.11.84e-68100.00hypothetical protein Csa_015822 [Cucumis sativus][more]
KAG6593380.13.17e-1080.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7025727.13.19e-1080.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023515085.14.34e-1077.14pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp... [more]
XP_022960219.14.34e-1077.14pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A0A0KA268.91e-69100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432230 PE=4 SV=1[more]
A0A6J1HAB12.10e-1077.14pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita moschata... [more]
A0A6J1KVF31.36e-0971.43pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita maxima O... [more]
A0A6J1D5R53.07e-0858.70pentatricopeptide repeat-containing protein At4g02750-like OS=Momordica charanti... [more]
A0A5N5G8136.94e-0768.57Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi... [more]
Match NameE-valueIdentityDescription
AT1G25360.11.1e-0441.30Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G03880.11.1e-0444.12Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G39680.11.5e-0450.00Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G15510.11.9e-0429.73Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G57430.12.5e-0447.62Tetratricopeptide repeat (TPR)-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G018617.1CsGy7G018617.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding