CsGy7G017970 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G017970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	CCR4-NOT transcription complex subunit like
Location	Gy14Chr7: 21132396 .. 21134624 (-)
RNA-Seq Expression	CsGy7G017970
Synteny	CsGy7G017970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTCCATCATCGTTGATACAATATGATTGGATGATATGATATGTTATTTTATTGGTCATAAAATAATCATATTCATTATGAAGTTACGAAATTCAAAACAAATGTGTATTAAAAAATGAAAATATTGGTATGATAAGAAAATGACACGTAGATTACGAACGGAAGAAGCACCAACCACTCACTCTTTGTGTCCGGAGGCTCCAAAGTTTTTGTATTACGACTAAGTCACTGACGGTGAAGAATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTATCCTTCGTGTAATCACTCTTCTTCGATTCCTCGTATTCAACATTTTAAATCTCTTAGAAAATTTCGGGATTTTTATATGCTGTAATGAGACTAATGAGCATGCTTGCGATGAAGTTCATCTGTTACTTAGTCCTGTAAAGTGGATCGACTGTTTATTTTTGTTGAAAATGGAATGCAGCTGGTAGTTGCTAATTCCTAATTGCTTTTGGCTTCTAACGCAAAGTGCTTCACTAGTATTTGGTTTTATTTTTCTGAGTTTATATTTGACATACCTTTGATTTGATTACTACTTAAGCAGTTTTCTTCGATCTCGGTATTCAACATCTATAATCTCAGGGATATCCGGATTTTTATGTGTTGAATGGAGCATGTTAGCATTAAAGTGAATCCTCCTTGATTTGTGTGTTGAAAGTGGAATTGAACGATTGTCGCTGGCTTGCTGGTTCCTAGTTGGTTTCAGCTACTGACGCAAACAGCTTATTAACGTTCTGAATGTTTTATAGTTTAAATGTTGTGAACCTTTGATTTGATACCTATTTTAGCAGTCCTTTTCGACAAATTGCTTCTGGCTGGCATGTACAGTTTCAAAGGATATCTGAAGTTATTATTTGGTGTTGCACTGTTGTGAGCATTTTAGCATTCAAGTTCGTCTATAACTTTGTTATGTTAAGGTAATCCATTTTGATTCTTGTGCTGAAAATTGAATTTGAAGGTAGTTACTAAACCCTAAGCCCCAATTAAACACGCACAGCCCTCGGGCCAAACAAGGAAGCTCACTCCACTCCACCTAAACCCTCAGCCCAAACAGGCCCAAAGCTTAAATAGTGTTAGGATTGAGACTTCCTGATCTTGTTCGACGTCTACATGGGATGGATCTTTGATTTGATACTTATTTGGTCATTACATGAGCATGAATAGAACTTTGTCCATTATTTGTTGGTTTCTGGTGCAAATAGGGAAAGTCTTATTTGTTCGTTCTGAAGGCTCTTCTCTAATAGTGAAGCAGTTCTACTGTAGATTTCCGGGAAATAATAATTCTACAATGGCCTATATGGTTTCTTGAAAATAGAATTAAAACCTATTATCTTCTCAAATTGTCAGTTGACTCATCTGTGCATTCTCTGCCAAGTTACTCTTTAGAGTAATCTTGTGGAGTATTGGGGTGGAAAATAAAATTTCCCATCATTCTTGGTTCCATCTTTTAGGATCTTTATTGGCCTTTGTCTGTTTAGCTTTTCGCTTTTTGGTTTCTTTTCATATCATTTATTACTGGTAATTATTTACTCAGAAAGATATATATGGCAGGCTTGTATAAGGGCCAAACCAGTATCTGAAATTCTCTTTTCACATGCTAAGCAGATTTACTGGAAACTATAATACATTTAAGAATTAAGAGTATGAAATGACTGATATTTGTATTCGCAATATTTACTTAGACGAGTGCTTATGTGATTTCTTTTATACAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAATGTCGCATAATTGGAATAGTTTCATGTTTCTAAGCATAAATCTGTATGGTTATATTTGTAGCAAAACTTACTTTTTAGCCAGTTTTAGCTTTATTTGTAGTGAATAGATTTTGTTTTCATCTTATTTATGCCCTA

mRNA sequence

TTATTTCCATCATCGTTGATACAATATGATTGGATGATATGATATGTTATTTTATTGGTCATAAAATAATCATATTCATTATGAAGTTACGAAATTCAAAACAAATGTGTATTAAAAAATGAAAATATTGGTATGATAAGAAAATGACACGTAGATTACGAACGGAAGAAGCACCAACCACTCACTCTTTGTGTCCGGAGGCTCCAAAGTTTTTGTATTACGACTAAGTCACTGACGGTGAAGAATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAATGTCGCATAATTGGAATAGTTTCATGTTTCTAAGCATAAATCTGTATGGTTATATTTGTAGCAAAACTTACTTTTTAGCCAGTTTTAGCTTTATTTGTAGTGAATAGATTTTGTTTTCATCTTATTTATGCCCTA

Coding sequence (CDS)

ATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAA

Protein sequence

MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVVKLISAK*

Homology

[Close]

BLAST of CsGy7G017970 vs. NCBI nr
Match: XP_011659472.1 (uncharacterized protein LOC101220885 [Cucumis sativus] >KGN45172.1 hypothetical protein Csa_016505 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 1.56e-76
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120
           IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 126
           KLISAK
Sbjct: 121 KLISAK 126

[Close]

BLAST of CsGy7G017970 vs. NCBI nr
Match: XP_038899532.1 (uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida])

HSP 1 Score: 168 bits (425), Expect = 4.42e-51
Identity = 100/128 (78.12%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MAS+FAAP  +LNLTSR S IHRA LPS I +IQFHSNASPFPSFRYR N  GLELRQRS
Sbjct: 1   MASIFAAPSFRLNLTSRPSLIHRAALPSSIDAIQFHSNASPFPSFRYR-NTRGLELRQRS 60

Query: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120
             I AS S+DGNSIKEEN SSKAS+D AQGPPFLTILAG FV SL+LWIFSS VTS L L
Sbjct: 61  FSITASNSSDGNSIKEENGSSKASTD-AQGPPFLTILAGIFVFSLVLWIFSSVVTSFLSL 120

Query: 121 VVKLISAK 126
           VVKLIS K
Sbjct: 121 VVKLISTK 126

[Close]

BLAST of CsGy7G017970 vs. NCBI nr
Match: XP_022953425.1 (uncharacterized protein LOC111455984 [Cucurbita moschata])

HSP 1 Score: 166 bits (421), Expect = 1.80e-50
Identity = 98/128 (76.56%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MAS+F+APPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQRS
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRS 60

Query: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120
             I AS S+DGNSIKEEN SSKASSD AQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  FSITASNSSDGNSIKEENGSSKASSD-AQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLISAK 126
           VVKLIS K
Sbjct: 121 VVKLISTK 126

[Close]

BLAST of CsGy7G017970 vs. NCBI nr
Match: KAG6575660.1 (hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014210.1 hypothetical protein SDJN02_24385 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164 bits (416), Expect = 1.04e-49
Identity = 98/128 (76.56%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQRS
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRS 60

Query: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120
             I AS S+D NSIKEEN SSKASSD AQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  FSITASNSSDRNSIKEENGSSKASSD-AQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLISAK 126
           VVKLIS K
Sbjct: 121 VVKLISTK 126

[Close]

BLAST of CsGy7G017970 vs. NCBI nr
Match: XP_022991945.1 (uncharacterized protein LOC111488436 [Cucurbita maxima])

HSP 1 Score: 159 bits (402), Expect = 1.36e-47
Identity = 95/126 (75.40%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLEL  RS
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELSPRS 60

Query: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120
             I AS S+DGNSI+EEN SSKASSD AQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  FSITASNSSDGNSIEEENGSSKASSD-AQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLIS 124
           VVKLIS
Sbjct: 121 VVKLIS 124

[Close]

BLAST of CsGy7G017970 vs. ExPASy TrEMBL
Match: A0A0A0K9W1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 7.55e-77
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120
           IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 126
           KLISAK
Sbjct: 121 KLISAK 126

[Close]

BLAST of CsGy7G017970 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 8.71e-51
Identity = 98/128 (76.56%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MAS+F+APPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQRS
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRS 60

Query: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120
             I AS S+DGNSIKEEN SSKASSD AQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  FSITASNSSDGNSIKEENGSSKASSD-AQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLISAK 126
           VVKLIS K
Sbjct: 121 VVKLISTK 126

[Close]

BLAST of CsGy7G017970 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 6.59e-48
Identity = 95/126 (75.40%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLEL  RS
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELSPRS 60

Query: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120
             I AS S+DGNSI+EEN SSKASSD AQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  FSITASNSSDGNSIEEENGSSKASSD-AQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLIS 124
           VVKLIS
Sbjct: 121 VVKLIS 124

[Close]

BLAST of CsGy7G017970 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 1.01e-42
Identity = 89/129 (68.99%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MASVFAAPPSQLNLTSRRSSI-HRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR 60
           MASVFAAPPSQL L+S R S+ H+AFLPS I  ++FH N  P PSFRY KN  GL+LRQR
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPS-IVGVKFHRNGFPIPSFRY-KNTKGLKLRQR 60

Query: 61  S--IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLG 120
           S  I AS S+DGNS KEEN  SK + D AQGPPFLTILAGFFV SL+LWI SS+VT+L+ 
Sbjct: 61  SFSITASNSSDGNSTKEENDGSKVTGD-AQGPPFLTILAGFFVFSLVLWIVSSSVTTLIA 120

Query: 121 LVVKLISAK 126
           LVVKLIS K
Sbjct: 121 LVVKLISTK 126

[Close]

BLAST of CsGy7G017970 vs. ExPASy TrEMBL
Match: A0A5A7UVF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001230 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 9.78e-42
Identity = 78/88 (88.64%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
          MAS+F APPSQLNLTSRRS  HRA LPS IASIQF SNASPF SF  RKNIIGLELRQRS
Sbjct: 1  MASIFVAPPSQLNLTSRRSLTHRAVLPSSIASIQFQSNASPFLSFSNRKNIIGLELRQRS 60

Query: 61 IAASKSTDGNSIKEENSSSKASSDDAQG 88
          IAASKSTDGNSIKEENSSSKASSDDAQG
Sbjct: 61 IAASKSTDGNSIKEENSSSKASSDDAQG 88

The following BLAST results are available for this feature:

BLAST of CsGy7G017970 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G017970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659472.1	1.56e-76	100.00	uncharacterized protein LOC101220885 [Cucumis sativus] >KGN45172.1 hypothetical ...	[more]
XP_038899532.1	4.42e-51	78.13	uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida]	[more]
XP_022953425.1	1.80e-50	76.56	uncharacterized protein LOC111455984 [Cucurbita moschata]	[more]
KAG6575660.1	1.04e-49	76.56	hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022991945.1	1.36e-47	75.40	uncharacterized protein LOC111488436 [Cucurbita maxima]	[more]

BLAST of CsGy7G017970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9W1	7.55e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1	[more]
A0A6J1GPL5	8.71e-51	76.56	uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]
A0A6J1JUC2	6.59e-48	75.40	uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436...	[more]
A0A6J1KVQ7	1.01e-42	68.99	uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025...	[more]
A0A5A7UVF6	9.78e-42	88.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy7G017970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G017970.2	CsGy7G017970.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane