CsGy7G017695 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G017695
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	arabinogalactan peptide 23-like
Location	Gy14Chr7: 20957309 .. 20957503 (+)
RNA-Seq Expression	CsGy7G017695
Synteny	CsGy7G017695

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAAGATCGCCTGCGCTGCTCTTTTCGCCGCCGCTGCCATCAGCGCTGCCGTGGCTGCCGATGAGTCTCTCTCTCCCGGCGCTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGTGCCGCCTCCGCCGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA

mRNA sequence

ATGGAAATGAAGAAGATCGCCTGCGCTGCTCTTTTCGCCGCCGCTGCCATCAGCGCTGCCGTGGCTGCCGATGAGTCTCTCTCTCCCGGCGCTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGTGCCGCCTCCGCCGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCCTGCGCTGCTCTTTTCGCCGCCGCTGCCATCAGCGCTGCCGTGGCTGCCGATGAGTCTCTCTCTCCCGGCGCTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGTGCCGCCTCCGCCGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA

Protein sequence

MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAAYFLN*

Homology

[Close]

BLAST of CsGy7G017695 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-05
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVL----GASVVS 60
          MEMKKIAC  LFAAA+++A +AA+E  +P      APGP+SAASAALP L    GAS+VS
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP------APGPASAASAALPALGSLVGASLVS 59

Query: 61 FVAAY 62
            + Y
Sbjct: 61 LFSYY 59

[Close]

BLAST of CsGy7G017695 vs. NCBI nr
Match: KGN45143.1 (hypothetical protein Csa_016530 [Cucumis sativus])

HSP 1 Score: 102 bits (254), Expect = 6.69e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60
          MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60

Query: 61 YFLN 64
          YFLN
Sbjct: 61 YFLN 64

[Close]

BLAST of CsGy7G017695 vs. NCBI nr
Match: XP_008461276.1 (PREDICTED: arabinogalactan peptide 23-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 9.32e-22
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60
          MEMKKIACAALFAAAA+SAAVAADES+SP    AAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISP----AAAPGPSSAASAALPVLGASVVSFVAA 60

Query: 61 YFLN 64
          YFLN
Sbjct: 61 YFLN 60

[Close]

BLAST of CsGy7G017695 vs. NCBI nr
Match: XP_038899473.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 1.80e-15
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLG----ASVVS 60
          MEMKKIACAALFAAAA+S+AVAADESLSP    AAAPGPSSAASAALP LG    AS+V+
Sbjct: 1  MEMKKIACAALFAAAAVSSAVAADESLSP----AAAPGPSSAASAALPALGSLVGASLVT 60

Query: 61 FVAAYFLN 64
          FVA YFLN
Sbjct: 61 FVA-YFLN 63

[Close]

BLAST of CsGy7G017695 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.7 bits (169), Expect = 6.03e-14
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLG----ASVVS 60
          MEMKKIACAALFAAA ++A VA+DESLSP    AAAPGPSSAASAALP LG    AS+VS
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSP----AAAPGPSSAASAALPALGSLVGASLVS 60

Query: 61 FVAAYF 62
          FVA YF
Sbjct: 61 FVAFYF 62

[Close]

BLAST of CsGy7G017695 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 6.03e-14
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLG----ASVVS 60
          MEMKKIACAALFAAA ++A VA+DESLSP    AAAPGPSSAASAALP LG    AS+VS
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSP----AAAPGPSSAASAALPALGSLVGASLVS 60

Query: 61 FVAAYF 62
          FVA YF
Sbjct: 61 FVAYYF 62

[Close]

BLAST of CsGy7G017695 vs. ExPASy TrEMBL
Match: A0A0A0K6L5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428800 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 3.24e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60
          MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60

Query: 61 YFLN 64
          YFLN
Sbjct: 61 YFLN 64

[Close]

BLAST of CsGy7G017695 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.51e-22
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60
          MEMKKIACAALFAAAA+SAAVAADES+SP    AAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISP----AAAPGPSSAASAALPVLGASVVSFVAA 60

Query: 61 YFLN 64
          YFLN
Sbjct: 61 YFLN 60

[Close]

BLAST of CsGy7G017695 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.92e-14
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLG----ASVVS 60
          MEMKKIACAALFAAA ++A VA+DESLSP    AAAPGPSSAASAALP LG    AS+VS
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSP----AAAPGPSSAASAALPALGSLVGASLVS 60

Query: 61 FVAAYF 62
          FVA YF
Sbjct: 61 FVAYYF 62

[Close]

BLAST of CsGy7G017695 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.15e-14
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLG----ASVVS 60
          MEMKKIACAALFAAA ++A VA+DESLSP    AAAPGPSSAASAALP LG    AS+VS
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSP----AAAPGPSSAASAALPALGSLVGASLVS 60

Query: 61 FVAAYF 62
          FVA YF
Sbjct: 61 FVAFYF 62

[Close]

BLAST of CsGy7G017695 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.76e-13
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLG----ASVVS 60
          MEMKKIACAALFAAA ++A VA+DESLSP    AAAPGPSSAASA LP LG    AS+VS
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSP----AAAPGPSSAASATLPALGSLVGASLVS 60

Query: 61 FVAAYF 62
           VA YF
Sbjct: 61 LVAYYF 62

[Close]

BLAST of CsGy7G017695 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 48.5 bits (114), Expect = 2.3e-06
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVL----GASVVS 60
          MEMKKIAC  LFAAA+++A +AA+E  +P      APGP+SAASAALP L    GAS+VS
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP------APGPASAASAALPALGSLVGASLVS 59

Query: 61 FVAAY 62
            + Y
Sbjct: 61 LFSYY 59

The following BLAST results are available for this feature:

BLAST of CsGy7G017695 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	3.3e-05	56.92	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of CsGy7G017695 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45143.1	6.69e-27	100.00	hypothetical protein Csa_016530 [Cucumis sativus]	[more]
XP_008461276.1	9.32e-22	90.63	PREDICTED: arabinogalactan peptide 23-like [Cucumis melo]	[more]
XP_038899473.1	1.80e-15	79.41	arabinogalactan protein 23-like [Benincasa hispida]	[more]
KAG7025661.1	6.03e-14	75.76	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023004714.1	6.03e-14	75.76	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]

BLAST of CsGy7G017695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6L5	3.24e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428800 PE=4 SV=1	[more]
A0A1S3CDX5	4.51e-22	90.63	arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=...	[more]
A0A6J1KX42	2.92e-14	75.76	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4...	[more]
A0A6J1H8I1	4.15e-14	75.76	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE...	[more]
A0A6J1F3F5	9.76e-13	72.73	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]

BLAST of CsGy7G017695 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	2.3e-06	56.92	arabinogalactan protein 23	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G017695.1	CsGy7G017695.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane