CsGy7G016470 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G016470
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTranscription initiation factor TFIID subunit 13
LocationGy14Chr7: 20062929 .. 20065654 (-)
RNA-Seq ExpressionCsGy7G016470
SyntenyCsGy7G016470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATAAGGCTAAACACAAATTTACTCGGAGAGATAAAGAATCATAAGATAGATATTAGAAATTGTACTCTACACCCATAAACAAATCAATAGTAAATCAAGTTTATTGTTGAAATCTCGTGTGTACTCTTGGCTTGGCGCTCGGATATTGTCTGCGTTGTAGGCTTTTGGTGGGAATCACCGCTCCGATTCTCCATCTCCTGGTGAGAATCATGGCCCCTTGCTTAGCTGTTTTAAACAACTACTCCCTTTCTTTTCTCTTTTTTGGCTTGTGATTATTATTCCATTAATTGGACTCGATTATATCAATTTTATTTCACTTTTCCGAGGCTCCACTTTTGAAATTCCCCCCTTTCTGTTTCAATGTTTGCTTGACATTGTCATTAGGGTTTATCTTCTTTCCATCGAGTTACTGATAAAGTTCCCTTTTGGGGATATTTCAATTTAGTGGGTCGATGATTCTAGATGTTTGATATTGTTTAATTTGATTATTTTACCTTCACGTTTAGATTGTTTTCATTTTCATTGCTGTGGGAAGATAGTGAAGATGAACAATTCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATGTAACTGGTTTCCCTTTTCTTTCTTTTTTTTTTTCTTTTTCTTCTTCTTCATCTCAAGTTTGTATGTTGAAATGCAATTATGTGACCCTTCCTCTTTTCAGTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATGTAAGTGAAATTATCATATATTACTTTTGTTTTAACTTGTATAGAAAGGATTCTTATGTATGTTTCCATGGAAATTCAAACGTGAAATTTTGTTTTTTATGCTTTTTTGGGTTTTTCTGATCTTCCTCTTCCATGGCTTTGTATGTTTTGTCGAGAGAGCTTTGAAAGTGACTGTTGTTTAGTAGATGAAATTTTGATTGTTTAGCTTTTCTTTGAAGATATTTGGAATGATCAGTTGCTCATAAACTCGTCATAGGAACAGATATCTTCACGATTTCTGATAGCTCAAATTTTAATGTAAGCTGTCACCCCATCCCTTAAGTAAAATGTTGCCTGCCTGAAGAAAATTGGAAAGAAGTAATCAATATTCCTTGTATTTTCTAAAATTGAGCTCAAGTTTCCCATCCCGTGAATGGCAGAATAGAATAATGGTTTTGAAATCCTGAAGCTTTGTATAGTGGCTGGGTTTTACGAGTCTTAATGTTAAGTAAGAGCCATGCTAAGAATTTAATTGGCTGCCTCTCTCTTTACTCATATGTTCTTAGCAGATCAGAAGTACAATGCAACCGTGGAAAAGTTCTAGTCTTTGTGTTCTTGTTCTCATTTAGAAATAAGAAATATCTATTCATGAGTTTTTGTTTGCTGCACTGCAGCCCCTTCCAGAGTCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATTACTGAACTGGTAAGAATTTCTTTGCAAGTATCATAAACATTCCTTGCTAAACCAATGTTGTATGGTTAGGATTATCTGAAATATATGTTCTTTGTAGGTGTATAAAGCTCAGGAAATTGGATCAAAGAGAGGAAAGCTATCGGTGGAAGACTTTTTGTATTTAATGCGAAAGGTACATTACTATATGACATAATCTCTGTCTGTATGTTTTCTTATCAATGAATGAACTTAAGTTCTCTCAATATTTGGCTATGAAACAACTACAAGGCATCCTTAATCTTTAGACATTGGACATATTAAAATTTTCTTACTGCATTTTGTAAGCACAGATTTCTTCTGTACCAGCTTTTGTTATAATCTTCATTCCAATGTGATTTCGGGGATTTACTGATTGCATAAACAGATCAGCTCAATAATTTTGAACTAAAATTAGGTGCCTCAAGCGCCCTTTCCTACAATCATTTAACTAAAGATTTGATGTCAAAACTTCTAAACCTATATGATTTTCCACATTTTAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAAGCGAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATACTTTGGAGGTCATATGTCATTGTTGCTGCACAGACAAAGCATGTCTCATTATGGTTCCTTGTGATACTAAAAGACAACCGACGGGTCTTAGAACTCTCTGTCTTTGTCGAGCAAAGCAAGGTATATTTTGTTTTTTCTGCTTAATGGCAATCAATGTACCTTGATCCCCTTCCTTTCCGCCCTAACCTACTTATAAAAGGTAGGGGCTTCCCTATTGTACACGCACCCCTTTTGGAATTAATGAAATGAACGCATCCTTTAAACGTTTGTAGC

mRNA sequence

CAATAAGGCTAAACACAAATTTACTCGGAGAGATAAAGAATCATAAGATAGATATTAGAAATTGTACTCTACACCCATAAACAAATCAATAGTAAATCAAGTTTATTGTTGAAATCTCGTGTGTACTCTTGGCTTGGCGCTCGGATATTGTCTGCGTTGTAGGCTTTTGGTGGGAATCACCGCTCCGATTCTCCATCTCCTGATAGTGAAGATGAACAATTCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAGTCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATTACTGAACTGGTGTATAAAGCTCAGGAAATTGGATCAAAGAGAGGAAAGCTATCGGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAAGCGAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATACTTTGGAGGTCATATGTCATTGTTGCTGCACAGACAAAGCATGTCTCATTATGGTTCCTTGTGATACTAAAAGACAACCGACGGGTCTTAGAACTCTCTGTCTTTGTCGAGCAAAGCAAGGTATATTTTGTTTTTTCTGCTTAATGGCAATCAATGTACCTTGATCCCCTTCCTTTCCGCCCTAACCTACTTATAAAAGGTAGGGGCTTCCCTATTGTACACGCACCCCTTTTGGAATTAATGAAATGAACGCATCCTTTAAACGTTTGTAGC

Coding sequence (CDS)

ATGAACAATTCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAGTCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATTACTGAACTGGTGTATAAAGCTCAGGAAATTGGATCAAAGAGAGGAAAGCTATCGGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAAGCGAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAG

Protein sequence

MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD*
Homology
[Close]
BLAST of CsGy7G016470 vs. ExPASy Swiss-Prot
Match: Q6NQH4 (Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.4e-36
Identity = 81/122 (66.39%), Postives = 102/122 (83.61%), Query Frame = 0 

Query: 4   SSAGPSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVE 63
           ++A  SSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVE
Sbjct: 7   AAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVE 66

Query: 64  YITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDED 123
           Y+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE 
Sbjct: 67  YVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDEK 124

Query: 124 KL 125
           +L
Sbjct: 127 EL 124

[Close]
BLAST of CsGy7G016470 vs. ExPASy Swiss-Prot
Match: Q148M7 (Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CsGy7G016470 vs. ExPASy Swiss-Prot
Match: Q15543 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CsGy7G016470 vs. ExPASy Swiss-Prot
Match: P61216 (Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CsGy7G016470 vs. ExPASy Swiss-Prot
Match: Q5R9W6 (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_004136002.1 (transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 hypothetical protein Csa_016903 [Cucumis sativus])

HSP 1 Score: 256 bits (653), Expect = 1.51e-85
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_008451497.1 (PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451498.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451499.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451500.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451501.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451502.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451503.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901114.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901115.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901116.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >KAA0046681.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (645), Expect = 2.51e-84
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 253 bits (645), Expect = 2.60e-84
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKLD 135

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: TYK18217.1 (transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (645), Expect = 5.45e-84
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 24  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 83

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 84  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 143

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDKMD
Sbjct: 144 EDKLKKAFEEEDKMD 158

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_038899215.1 (transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899216.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899217.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida])

HSP 1 Score: 249 bits (636), Expect = 6.12e-83
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLIRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. ExPASy TrEMBL
Match: A0A0A0KB69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 7.32e-86
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. ExPASy TrEMBL
Match: A0A1S3BRL0 (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 1.22e-84
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. ExPASy TrEMBL
Match: A0A5A7TZC2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00490 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 1.22e-84
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. ExPASy TrEMBL
Match: A0A6J1CTQ0 (transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 GN=LOC111014188 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 1.26e-84
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKLD 135

[Close]
BLAST of CsGy7G016470 vs. ExPASy TrEMBL
Match: A0A5D3D2Q2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001560 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 2.64e-84
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 24  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 83

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 84  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 143

Query: 121 EDKLKKAFEEEDKMD 135
           EDKLKKAFEEEDKMD
Sbjct: 144 EDKLKKAFEEEDKMD 158

[Close]
BLAST of CsGy7G016470 vs. TAIR 10
Match: AT1G02680.1 (TBP-associated factor 13 )

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-37
Identity = 81/122 (66.39%), Postives = 102/122 (83.61%), Query Frame = 0 

Query: 4   SSAGPSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVE 63
           ++A  SSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVE
Sbjct: 7   AAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVE 66

Query: 64  YITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDED 123
           Y+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE 
Sbjct: 67  YVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDEK 124

Query: 124 KL 125
           +L
Sbjct: 127 EL 124

The following BLAST results are available for this feature:
BLAST of CsGy7G016470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NQH43.4e-3666.39Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702... [more]
Q148M73.9e-2459.57Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 ... [more]
Q155433.9e-2459.57Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF1... [more]
P612163.9e-2459.57Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf... [more]
Q5R9W63.9e-2459.57Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF1... [more]
BLAST of CsGy7G016470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136002.11.51e-85100.00transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 h... [more]
XP_008451497.12.51e-8499.26PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_0... [more]
XP_022144527.12.60e-8498.52transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214... [more]
TYK18217.15.45e-8499.26transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa][more]
XP_038899215.16.12e-8397.78transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_03... [more]
BLAST of CsGy7G016470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB697.32e-86100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1[more]
A0A1S3BRL01.22e-8499.26transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A5A7TZC21.22e-8499.26Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=... [more]
A0A6J1CTQ01.26e-8498.52transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 ... [more]
A0A5D3D2Q22.64e-8499.26Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=... [more]
BLAST of CsGy7G016470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G02680.12.4e-3766.39TBP-associated factor 13 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 30..74
e-value: 3.2E-22
score: 79.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 31..73
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 30..118
e-value: 3.1E-31
score: 107.2
IPR003195Transcription initiation factor IID, subunit 13PANTHERPTHR11380TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATEDcoord: 1..132
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 28..118
e-value: 7.8407E-42
score: 131.884

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G016470.2CsGy7G016470.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009960 endosperm development
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0006413 translational initiation
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003743 translation initiation factor activity