CsGy7G013015 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G013015
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
LocationGy14Chr7: 16834815 .. 16835111 (+)
RNA-Seq ExpressionCsGy7G013015
SyntenyCsGy7G013015
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATGTGAATGACAATACTTTAAGAGAGTGAAAGAATTTTCCATGATAATGATGATGTAAAGTCCTCTTATGATCATGTTTCTTTAAGTGCATTTGATACCTTAGAATCATTAGAGACACTTGAAAAACATGATAAATTCAATGAGGTTGTTGATCAAGCAACTATTGAACATGTTGAAATGGAGGTTGCTAAGAACGACGTAAGTGATGATGATCTTTCAATCTTCCTTGACTTTGTTACTAGTATAAATAATGAGCATCCTCTAGTTGACAATGTTGTAACACATGAATAA

mRNA sequence

ATGCATATAATTTTCCATGATAATGATGATGTAAAGTCCTCTTATGATCATGTTTCTTTAAGTGCATTTGATACCTTAGAATCATTAGAGACACTTGAAAAACATGATAAATTCAATGAGGTTGTTGATCAAGCAACTATTGAACATGTTGAAATGGAGGTTGCTAAGAACGACGTAAGTGATGATGATCTTTCAATCTTCCTTGACTTTGTTACTAGTATAAATAATGAGCATCCTCTAGTTGACAATGTTGTAACACATGAATAA

Coding sequence (CDS)

ATGCATATAATTTTCCATGATAATGATGATGTAAAGTCCTCTTATGATCATGTTTCTTTAAGTGCATTTGATACCTTAGAATCATTAGAGACACTTGAAAAACATGATAAATTCAATGAGGTTGTTGATCAAGCAACTATTGAACATGTTGAAATGGAGGTTGCTAAGAACGACGTAAGTGATGATGATCTTTCAATCTTCCTTGACTTTGTTACTAGTATAAATAATGAGCATCCTCTAGTTGACAATGTTGTAACACATGAATAA

Protein sequence

MHIIFHDNDDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDDLSIFLDFVTSINNEHPLVDNVVTHE*
Homology
BLAST of CsGy7G013015 vs. NCBI nr
Match: KAE8645971.1 (hypothetical protein Csa_015450 [Cucumis sativus])

HSP 1 Score: 120 bits (300), Expect = 4.24e-31
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0

Query: 4   IFHDNDDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDD 63
           IF+D DDV  S DHVSLSAFDTLESLETLEKH  FNE+VDQAT+EHVE+E AKND SDDD
Sbjct: 179 IFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAKNDPSDDD 238

Query: 64  LSIFLDFVTSINNEHPLV 81
           LSIFL FVTSIN+EH LV
Sbjct: 239 LSIFLGFVTSINDEHALV 256

BLAST of CsGy7G013015 vs. NCBI nr
Match: KAA0062405.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa] >TYK26576.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 3.74e-28
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 4   IFHDNDDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDD 63
           +F   DDVKSS DHVSL A DTLESLETLE+HDKFNE++DQAT+E+V+ E +KN  SDDD
Sbjct: 206 VFQHFDDVKSSNDHVSLRALDTLESLETLEEHDKFNELIDQATLEYVKNEFSKNKPSDDD 265

Query: 64  LSIFLDFVTSINNEHPLVDNVVTHE 88
           LSIFLDFV S+N+ H LVDN+ T+E
Sbjct: 266 LSIFLDFVASVNDGHVLVDNIATNE 290

BLAST of CsGy7G013015 vs. NCBI nr
Match: KAA0042324.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa] >TYK15448.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 1.20e-27
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0

Query: 9   DDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDDLSIFL 68
           DDVKSS  HVSL A DTLESL+ LE+HDKFNE++DQAT+EHVE E AKN  SDDDLSIFL
Sbjct: 133 DDVKSSNVHVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKPSDDDLSIFL 192

Query: 69  DFVTSINNEHPLVDNVVTHE 88
           DFVTS+N+E+ LVDN+ T+E
Sbjct: 193 DFVTSVNDEYVLVDNIATNE 212

BLAST of CsGy7G013015 vs. NCBI nr
Match: KAA0047865.1 (hypothetical protein E6C27_scaffold133G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 2.42e-27
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 0

Query: 10  DVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDDLSIFLD 69
           DVK S DHVSL A DTLESLETLE+HDKF+E++DQAT+++V+ + AKN  SD+DLSIFLD
Sbjct: 49  DVKYSNDHVSLCALDTLESLETLEEHDKFDELIDQATLDYVDNKFAKNKPSDNDLSIFLD 108

Query: 70  FVTSINNEHPLVDNVVTH 87
           FVTS+N+EH LVDN+ T+
Sbjct: 109 FVTSVNDEHVLVDNLATN 126

BLAST of CsGy7G013015 vs. NCBI nr
Match: KAE8649397.1 (hypothetical protein Csa_011845 [Cucumis sativus])

HSP 1 Score: 111 bits (277), Expect = 1.20e-26
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 9   DDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDDLSIFL 68
           DD+KSS DHVSL A DTLESLETLE+ DK NE++DQAT+E+V+ E +K   S+DDLSIFL
Sbjct: 315 DDIKSSNDHVSLCALDTLESLETLEEQDKLNELIDQATLEYVDNEFSKEKPSNDDLSIFL 374

Query: 69  DFVTSINNEHPLVDNVVTHE 88
           DFVTSIN+EH LVDNV TH+
Sbjct: 375 DFVTSINDEHALVDNVTTHK 394

BLAST of CsGy7G013015 vs. ExPASy TrEMBL
Match: A0A0A0K703 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G157510 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 5.96e-32
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0

Query: 4   IFHDNDDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDD 63
           IF+D DDV  S DHVSLSAFDTLESLETLEKH  FNE+VDQAT+EHVE+E AKND SDDD
Sbjct: 128 IFNDKDDVNPSSDHVSLSAFDTLESLETLEKHGNFNEIVDQATLEHVEIEAAKNDPSDDD 187

Query: 64  LSIFLDFVTSINNEHPLV 81
           LSIFL FVTSIN+EH LV
Sbjct: 188 LSIFLGFVTSINDEHALV 205

BLAST of CsGy7G013015 vs. ExPASy TrEMBL
Match: A0A5D3DS97 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001930 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 1.81e-28
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 4   IFHDNDDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDD 63
           +F   DDVKSS DHVSL A DTLESLETLE+HDKFNE++DQAT+E+V+ E +KN  SDDD
Sbjct: 206 VFQHFDDVKSSNDHVSLRALDTLESLETLEEHDKFNELIDQATLEYVKNEFSKNKPSDDD 265

Query: 64  LSIFLDFVTSINNEHPLVDNVVTHE 88
           LSIFLDFV S+N+ H LVDN+ T+E
Sbjct: 266 LSIFLDFVASVNDGHVLVDNIATNE 290

BLAST of CsGy7G013015 vs. ExPASy TrEMBL
Match: A0A5D3CW21 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00170 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 5.79e-28
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0

Query: 9   DDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDDLSIFL 68
           DDVKSS  HVSL A DTLESL+ LE+HDKFNE++DQAT+EHVE E AKN  SDDDLSIFL
Sbjct: 133 DDVKSSNVHVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKPSDDDLSIFL 192

Query: 69  DFVTSINNEHPLVDNVVTHE 88
           DFVTS+N+E+ LVDN+ T+E
Sbjct: 193 DFVTSVNDEYVLVDNIATNE 212

BLAST of CsGy7G013015 vs. ExPASy TrEMBL
Match: A0A5A7U2G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001340 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 1.17e-27
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 0

Query: 10  DVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDDLSIFLD 69
           DVK S DHVSL A DTLESLETLE+HDKF+E++DQAT+++V+ + AKN  SD+DLSIFLD
Sbjct: 49  DVKYSNDHVSLCALDTLESLETLEEHDKFDELIDQATLDYVDNKFAKNKPSDNDLSIFLD 108

Query: 70  FVTSINNEHPLVDNVVTH 87
           FVTS+N+EH LVDN+ T+
Sbjct: 109 FVTSVNDEHVLVDNLATN 126

BLAST of CsGy7G013015 vs. ExPASy TrEMBL
Match: A0A5A7TE46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00410 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 3.99e-26
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 5   FHDNDDVKSSYDHVSLSAFDTLESLETLEKHDKFNEVVDQATIEHVEMEVAKNDVSDDDL 64
           F+  DDV SS DHVSL A DTLESL+T E+HDKFNE++DQ T+E+VE E AKN +SDDD 
Sbjct: 216 FNSFDDVNSSNDHVSLCALDTLESLKTQEEHDKFNELIDQTTLEYVENEFAKNKLSDDDF 275

Query: 65  SIFLDFVTSINNEHPLVDNVVTH 87
           SIFLDF  S+N+EH LVDN+ T+
Sbjct: 276 SIFLDFFASVNDEHALVDNLATN 298

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8645971.14.24e-3180.77hypothetical protein Csa_015450 [Cucumis sativus][more]
KAA0062405.13.74e-2869.41Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... [more]
KAA0042324.11.20e-2773.75Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... [more]
KAA0047865.12.42e-2769.23hypothetical protein E6C27_scaffold133G001340 [Cucumis melo var. makuwa][more]
KAE8649397.11.20e-2671.25hypothetical protein Csa_011845 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0K7035.96e-3280.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G157510 PE=4 SV=1[more]
A0A5D3DS971.81e-2869.41Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
A0A5D3CW215.79e-2873.75Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
A0A5A7U2G51.17e-2769.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TE463.99e-2666.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G013015.1CsGy7G013015.1mRNA