CsGy7G012850 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G012850
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	26S proteasome regulatory subunit 4 homolog
Location	Gy14Chr7: 16636395 .. 16636545 (-)
RNA-Seq Expression	CsGy7G012850
Synteny	CsGy7G012850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTGGAAATTTGGAGGAGCCGATTGATGAGAATCATGCCATTGTGTCTTCGTTTGTCGGTCTGAAGTACTATGTTGGGATCTTGTTGTTTGTCGATAAAGACCAACTCGAGCCTGGATGTGCCATTCTCATGCACAACAACGTAG

mRNA sequence

ATGAATGTTGGAAATTTGGAGGAGCCGATTGATGAGAATCATGCCATTGTGTCTTCGTTTGTCGGTCTGAAGTACTATGTTGGGATCTTGTTGTTTGTCGATAAAGACCAACTCGAGCCTGGATGTGCCATTCTCATGCACAACAACGTAG

Coding sequence (CDS)

ATGAATGTTGGAAATTTGGAGGAGCCGATTGATGAGAATCATGCCATTGTGTCTTCGTTTGTCGGTCTGAAGTACTATGTTGGGATCTTGTTGTTTGTCGATAAAGACCAACTCGAGCCTGGATGTGCCATTCTCATGCACAACAACGTAG

Protein sequence

MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNVX

Homology

[Close]

BLAST of CsGy7G012850 vs. ExPASy Swiss-Prot
Match: Q9SZD4 (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPT2A PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-17
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 51
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGC+ILMHN V
Sbjct: 110 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKV 159

[Close]

BLAST of CsGy7G012850 vs. ExPASy Swiss-Prot
Match: Q9SL67 (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana OX=3702 GN=RPT2B PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-17
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 51
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGC+ILMHN V
Sbjct: 110 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKV 159

[Close]

BLAST of CsGy7G012850 vs. ExPASy Swiss-Prot
Match: P46466 (26S proteasome regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=TBP2 PE=2 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-16
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 51
           M+VG+LEE IDE+HAIVSS VG +YYVGIL FVDKDQLEPGC+ILMHN V
Sbjct: 115 MSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKV 164

[Close]

BLAST of CsGy7G012850 vs. ExPASy Swiss-Prot
Match: P48601 (26S proteasome regulatory subunit 4 OS=Drosophila melanogaster OX=7227 GN=Rpt2 PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 6.8e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 51
           M+VGNLEE ID+NHAIVS+ VG ++YV IL FVDKDQLEPGC++L+++ V
Sbjct: 106 MSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKV 155

[Close]

BLAST of CsGy7G012850 vs. ExPASy Swiss-Prot
Match: Q90732 (26S proteasome regulatory subunit 4 OS=Gallus gallus OX=9031 GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 51
           M+VG LEE ID+NHAIVS+ VG ++YV IL FVDKD LEPGC++L+++ V
Sbjct: 107 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKV 156

[Close]

BLAST of CsGy7G012850 vs. NCBI nr
Match: KAE8646244.1 (hypothetical protein Csa_015755, partial [Cucumis sativus])

HSP 1 Score: 103 bits (258), Expect = 6.38e-28
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
          M+VGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLE GCAILMHNNV
Sbjct: 1  MSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGCAILMHNNV 50

[Close]

BLAST of CsGy7G012850 vs. NCBI nr
Match: MCI10541.1 (26S proteasome regulatory subunit 4A-like [Trifolium medium] >MCI10553.1 26S proteasome regulatory subunit 4A-like [Trifolium medium])

HSP 1 Score: 92.0 bits (227), Expect = 7.54e-22
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGCAILMHN V
Sbjct: 113 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKV 162

[Close]

BLAST of CsGy7G012850 vs. NCBI nr
Match: PSS14570.1 (26S proteasome regulatory subunit 4 A like [Actinidia chinensis var. chinensis])

HSP 1 Score: 92.0 bits (227), Expect = 8.12e-22
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGCAILMHN V
Sbjct: 111 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKV 160

[Close]

BLAST of CsGy7G012850 vs. NCBI nr
Match: XP_018464768.1 (PREDICTED: 26S proteasome regulatory subunit 4 homolog B-like [Raphanus sativus])

HSP 1 Score: 90.1 bits (222), Expect = 8.88e-22
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1  MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
          M+VGNLEE IDENHAIVSS VG +YYVGI+ FVDKDQLEPGC+ILMHN V
Sbjct: 43 MSVGNLEELIDENHAIVSSSVGPEYYVGIMSFVDKDQLEPGCSILMHNKV 92

[Close]

BLAST of CsGy7G012850 vs. NCBI nr
Match: MBA0847298.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 92.0 bits (227), Expect = 1.03e-21
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGCAILMHN V
Sbjct: 113 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKV 162

[Close]

BLAST of CsGy7G012850 vs. ExPASy TrEMBL
Match: A0A0A0K9W2 (Prot_ATP_ID_OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G339680 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.23e-27
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
          M+VGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLE GCAILMHNNV
Sbjct: 38 MSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGCAILMHNNV 87

[Close]

BLAST of CsGy7G012850 vs. ExPASy TrEMBL
Match: A0A392PEM4 (26S proteasome regulatory subunit 4A-like OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.65e-22
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGCAILMHN V
Sbjct: 113 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKV 162

[Close]

BLAST of CsGy7G012850 vs. ExPASy TrEMBL
Match: A0A2R6QTX5 (26S proteasome regulatory subunit 4 A like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15137 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.93e-22
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGCAILMHN V
Sbjct: 111 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKV 160

[Close]

BLAST of CsGy7G012850 vs. ExPASy TrEMBL
Match: A0A6J0LYA9 (26S proteasome regulatory subunit 4 homolog B-like OS=Raphanus sativus OX=3726 GN=LOC108836057 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.30e-22
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1  MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
          M+VGNLEE IDENHAIVSS VG +YYVGI+ FVDKDQLEPGC+ILMHN V
Sbjct: 43 MSVGNLEELIDENHAIVSSSVGPEYYVGIMSFVDKDQLEPGCSILMHNKV 92

[Close]

BLAST of CsGy7G012850 vs. ExPASy TrEMBL
Match: A0A7J9KLI3 (Prot_ATP_ID_OB domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_015738 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.01e-22
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 50
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGCAILMHN V
Sbjct: 113 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKV 162

[Close]

BLAST of CsGy7G012850 vs. TAIR 10
Match: AT2G20140.1 (AAA-type ATPase family protein )

HSP 1 Score: 89.4 bits (220), Expect = 9.3e-19
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 51
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGC+ILMHN V
Sbjct: 110 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKV 159

[Close]

BLAST of CsGy7G012850 vs. TAIR 10
Match: AT4G29040.1 (regulatory particle AAA-ATPase 2A )

HSP 1 Score: 89.4 bits (220), Expect = 9.3e-19
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLEPGCAILMHNNV 51
           M+VGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLEPGC+ILMHN V
Sbjct: 110 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKV 159

The following BLAST results are available for this feature:

BLAST of CsGy7G012850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZD4	1.3e-17	84.00	26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9SL67	1.3e-17	84.00	26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana OX=3702 GN...	[more]
P46466	1.9e-16	80.00	26S proteasome regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica OX=3...	[more]
P48601	6.8e-14	68.00	26S proteasome regulatory subunit 4 OS=Drosophila melanogaster OX=7227 GN=Rpt2 P...	[more]
Q90732	2.2e-12	64.00	26S proteasome regulatory subunit 4 OS=Gallus gallus OX=9031 GN=PSMC1 PE=2 SV=1	[more]

BLAST of CsGy7G012850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646244.1	6.38e-28	96.00	hypothetical protein Csa_015755, partial [Cucumis sativus]	[more]
MCI10541.1	7.54e-22	86.00	26S proteasome regulatory subunit 4A-like [Trifolium medium] >MCI10553.1 26S pro...	[more]
PSS14570.1	8.12e-22	86.00	26S proteasome regulatory subunit 4 A like [Actinidia chinensis var. chinensis]	[more]
XP_018464768.1	8.88e-22	82.00	PREDICTED: 26S proteasome regulatory subunit 4 homolog B-like [Raphanus sativus]	[more]
MBA0847298.1	1.03e-21	86.00	hypothetical protein [Gossypium schwendimanii]	[more]

BLAST of CsGy7G012850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9W2	1.23e-27	96.00	Prot_ATP_ID_OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G339...	[more]
A0A392PEM4	3.65e-22	86.00	26S proteasome regulatory subunit 4A-like OS=Trifolium medium OX=97028 PE=4 SV=1	[more]
A0A2R6QTX5	3.93e-22	86.00	26S proteasome regulatory subunit 4 A like OS=Actinidia chinensis var. chinensis...	[more]
A0A6J0LYA9	4.30e-22	82.00	26S proteasome regulatory subunit 4 homolog B-like OS=Raphanus sativus OX=3726 G...	[more]
A0A7J9KLI3	5.01e-22	86.00	Prot_ATP_ID_OB domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=...	[more]

BLAST of CsGy7G012850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20140.1	9.3e-19	84.00	AAA-type ATPase family protein	[more]
AT4G29040.1	9.3e-19	84.00	regulatory particle AAA-ATPase 2A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032501	Proteasomal ATPase OB C-terminal domain	PFAM	PF16450	Prot_ATP_ID_OB	coord: 3..48 e-value: 1.4E-6 score: 28.2
None	No IPR available	GENE3D	2.40.50.140		coord: 1..50 e-value: 2.0E-12 score: 48.7
None	No IPR available	PANTHER	PTHR23073:SF106	BNAA03G58880D PROTEIN	coord: 1..50
None	No IPR available	PANTHER	PTHR23073	26S PROTEASOME REGULATORY SUBUNIT	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G012850.2	CsGy7G012850.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0036402	proteasome-activating activity