CsGy7G012502 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G012502
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr7: 16120132 .. 16120401 (-)
RNA-Seq ExpressionCsGy7G012502
SyntenyCsGy7G012502
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGGTACGATGCTCTCTAGTTTTCTTCCTCATCTCTTCGTTGGTCATCTCCTACTTTTCCCCCAGCATCGCAACTTCAAGAAACATGCTTCAAATCATTCAAAATCCTACAACAGGAACAAGCGTCTACGACATTTCGAAACTTCACTTAAATGGTGAAACGGTTCCAAGTCCACCAATCGTTGGAGGGTTCAAAAACTGCAAGCCTAAAGGCTTTATTCCATGGTCCGCTCCAAGTCCATTGAGAAATGGTGTTCAATGCTAA

mRNA sequence

ATGGCTATGGTACGATGCTCTCTAGTTTTCTTCCTCATCTCTTCGTTGGTCATCTCCTACTTTTCCCCCAGCATCGCAACTTCAAGAAACATGCTTCAAATCATTCAAAATCCTACAACAGGAACAAGCGTCTACGACATTTCGAAACTTCACTTAAATGGTGAAACGGTTCCAAGTCCACCAATCGTTGGAGGGTTCAAAAACTGCAAGCCTAAAGGCTTTATTCCATGGTCCGCTCCAAGTCCATTGAGAAATGGTGTTCAATGCTAA

Coding sequence (CDS)

ATGGCTATGGTACGATGCTCTCTAGTTTTCTTCCTCATCTCTTCGTTGGTCATCTCCTACTTTTCCCCCAGCATCGCAACTTCAAGAAACATGCTTCAAATCATTCAAAATCCTACAACAGGAACAAGCGTCTACGACATTTCGAAACTTCACTTAAATGGTGAAACGGTTCCAAGTCCACCAATCGTTGGAGGGTTCAAAAACTGCAAGCCTAAAGGCTTTATTCCATGGTCCGCTCCAAGTCCATTGAGAAATGGTGTTCAATGCTAA

Protein sequence

MAMVRCSLVFFLISSLVISYFSPSIATSRNMLQIIQNPTTGTSVYDISKLHLNGETVPSPPIVGGFKNCKPKGFIPWSAPSPLRNGVQC*
Homology
BLAST of CsGy7G012502 vs. NCBI nr
Match: KAE8646224.1 (hypothetical protein Csa_016535 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.07e-21
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 0

Query: 1  MAMVRCSLVFFLISSLVISYFSPS-IATSRNMLQIIQNPTTGTSVYDISKLHLNGETVPS 60
          MA VRC+LVFFLIS L +SYFS + +ATSR+ML+I Q  TT  SV+D+     N     S
Sbjct: 1  MASVRCTLVFFLISLLALSYFSTTTMATSRSMLRISQKHTTEESVFDVP---FNDNMGAS 60

Query: 61 PPI-VGGFKNCKPKGFIPWSAPSPLRNGVQC 89
          P I VGG  +CKPKGFI WSAPSPLRN V C
Sbjct: 61 PSIPVGGLIDCKPKGFIRWSAPSPLRNTVLC 88

BLAST of CsGy7G012502 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 47.0 bits (110), Expect = 3.05e-04
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 0

Query: 7  SLVFFLISSLVISYFSPSIATSRNMLQI----------IQNPTTGTSVYDISKLHLNGET 66
          +++FFL+  +VIS  S  IATSR+ML +          +  P T     D   L L   T
Sbjct: 10 TIIFFLL--IVISSPSTIIATSRHMLALDTKESPPQPPMDKPPTSN---DFDTLSLPNGT 69

Query: 67 VPSPPIV-GGFKNCKPKGFIPWSAPSPLRNGV 87
             PP+     ++CKPKG + WS+PSP+RN +
Sbjct: 70 KAMPPMPESAVRSCKPKGPVRWSSPSPIRNNL 96

BLAST of CsGy7G012502 vs. NCBI nr
Match: KAE8646222.1 (hypothetical protein Csa_016310, partial [Cucumis sativus])

HSP 1 Score: 44.7 bits (104), Expect = 8.40e-04
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 26 ATSRNMLQIIQNPTTGTSVYDISKLHLNGETVPSPPI-VGGFKNCKPKGFI 75
          ATSR+ML+I Q  TT  SV+D+     N     SP I VGG  +CKPKGFI
Sbjct: 2  ATSRSMLRISQKHTTEESVFDVP---FNDNMGASPSIPVGGLIDCKPKGFI 49

BLAST of CsGy7G012502 vs. ExPASy TrEMBL
Match: A0A0A0KYN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.98e-04
Identity = 21/51 (41.18%), Postives = 27/51 (52.94%), Query Frame = 0

Query: 39  TTGTSVYDISKLHLNGETVPSPPIVGGFKNCKPKGFIPWSAPSPLRNGVQC 89
           TT T  +   K+    +   S       ++C PKG I WS+PSP RNGVQC
Sbjct: 59  TTSTMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8646224.11.07e-2160.44hypothetical protein Csa_016535 [Cucumis sativus][more]
KAG6595583.13.05e-0436.96hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646222.18.40e-0452.94hypothetical protein Csa_016310, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KYN09.98e-0441.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G012502.1CsGy7G012502.1mRNA