Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTTCAAGCAACGAGATAAAGAAAATATGCATGACACATGGAGCAGATTTAAGAGGTTGGTGAAAGCTTGTCCCTGTCATGGCATTCCCGAATGCGTATCGATGGAGGTGTTCTATTTTGGGTTGAGTAAAGATACTCATCAACTAGTTAATACTTTGTTCGTTGGAGGCATGTTGAGAAGCTCTTACAACCAGATTAAGGCTACATTAGACTCTATGTCCAACAATAGCCAAGAATGGGATGATATTGGTTTTGGCTCTCGCCATAGAGGAAGAACTAAAGAAGGATTGGATAAGAGTGTTGTGGTGGTACTCCAAGGACAAATGATTGCGATGAACAATCTGCTACAATCTATGACATTGTCCCAAGTCAACGCAGCGAACAACTATATTCATGCAGTGAAGCAGGTGAATAAATTTATTGTATGGGATGTGGCAATCCTCACATCACTGGCACATGCCCACTCAATAGTGAAACTATCACGTACGTGA
mRNA sequence
ATGATCTTCAAGCAACGAGATAAAGAAAATATGCATGACACATGGAGCAGATTTAAGAGGTTGGTGAAAGCTTGTCCCTGTCATGGCATTCCCGAATGCGTATCGATGGAGGTGTTCTATTTTGGGTTGAGTAAAGATACTCATCAACTAGTTAATACTTTGTTCGTTGGAGGCATGTTGAGAAGCTCTTACAACCAGATTAAGGCTACATTAGACTCTATGTCCAACAATAGCCAAGAATGGGATGATATTGGTTTTGGCTCTCGCCATAGAGGAAGAACTAAAGAAGGATTGGATAAGAGTGTTGTGGTGGTACTCCAAGGACAAATGATTGCGATGAACAATCTGCTACAATCTATGACATTGTCCCAAGTCAACGCAGCGAACAACTATATTCATGCAGTGAAGCAGGTGAATAAATTTATTGTATGGGATGTGGCAATCCTCACATCACTGGCACATGCCCACTCAATAGTGAAACTATCACGTACGTGA
Coding sequence (CDS)
ATGATCTTCAAGCAACGAGATAAAGAAAATATGCATGACACATGGAGCAGATTTAAGAGGTTGGTGAAAGCTTGTCCCTGTCATGGCATTCCCGAATGCGTATCGATGGAGGTGTTCTATTTTGGGTTGAGTAAAGATACTCATCAACTAGTTAATACTTTGTTCGTTGGAGGCATGTTGAGAAGCTCTTACAACCAGATTAAGGCTACATTAGACTCTATGTCCAACAATAGCCAAGAATGGGATGATATTGGTTTTGGCTCTCGCCATAGAGGAAGAACTAAAGAAGGATTGGATAAGAGTGTTGTGGTGGTACTCCAAGGACAAATGATTGCGATGAACAATCTGCTACAATCTATGACATTGTCCCAAGTCAACGCAGCGAACAACTATATTCATGCAGTGAAGCAGGTGAATAAATTTATTGTATGGGATGTGGCAATCCTCACATCACTGGCACATGCCCACTCAATAGTGAAACTATCACGTACGTGA
Protein sequence
MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT*
Homology
BLAST of CsGy7G011847 vs. NCBI nr
Match:
KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])
HSP 1 Score: 331 bits (848), Expect = 2.44e-114
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML
Sbjct: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
Query: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM
Sbjct: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
Query: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT 164
TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT
Sbjct: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT 164
BLAST of CsGy7G011847 vs. NCBI nr
Match:
KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])
HSP 1 Score: 168 bits (426), Expect = 1.57e-47
Identity = 86/148 (58.11%), Postives = 108/148 (72.97%), Query Frame = 0
Query: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
M F+QRD+EN+ D W RFKR++K CP H IPECV ME FYFGLSK+T Q N +F GGML
Sbjct: 1 MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60
Query: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRH--------RGRTKEGLDKSVVVVLQGQMIA 120
RSSYNQIK LD+M++NSQEW D FGSR+ RGR ++G+D S++V LQGQ+I
Sbjct: 61 RSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIE 120
Query: 121 MNNLLQSMTLSQVNAANNYIHAVKQVNK 140
MN +LQSM L QVN + + V+QVN+
Sbjct: 121 MN-ILQSMALLQVNVVRSSVQMVQQVNE 147
BLAST of CsGy7G011847 vs. NCBI nr
Match:
KAA0046468.1 (hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ97743.1 hypothetical protein E5676_scaffold1251G00450 [Cucumis melo var. makuwa])
HSP 1 Score: 130 bits (327), Expect = 2.61e-35
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 0
Query: 2 IFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLR 61
+F+ RD+EN++D WS KRLVKAC HGI +CV ME FYF LS+D Q V+ +FVGG+LR
Sbjct: 19 VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
Query: 62 SSYNQIKATLDSMSNNSQEWDDIGFGSR-----HRGRTKEGLDKSVVVVLQGQMIAMNNL 117
+SYNQ K LD+M +NSQE D S+ +RGRT EG+D++ +V LQGQ+ MN L
Sbjct: 79 NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138
BLAST of CsGy7G011847 vs. NCBI nr
Match:
KAA0059690.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK26127.1 Retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 124 bits (312), Expect = 9.34e-32
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
M+FKQR+ EN+HD WSRFKR++K C GIPE V MEVFYF LSKDT V +F GGML
Sbjct: 142 MLFKQREGENLHDAWSRFKRIMKFCLPKGIPEYVLMEVFYFKLSKDTQHTVGAVFAGGML 201
Query: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTK 95
+S YNQIK+ L+SM+ NSQEWDD F SR G K
Sbjct: 202 KSFYNQIKSMLNSMAGNSQEWDDSDFSSRLVGEEK 236
BLAST of CsGy7G011847 vs. NCBI nr
Match:
KGN53801.1 (hypothetical protein Csa_014772 [Cucumis sativus])
HSP 1 Score: 119 bits (298), Expect = 4.09e-31
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query: 21 LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80
++K C H I CV +E FYFGLS+DT Q V+ +F+GGMLR S N IK TLD+M +NSQE
Sbjct: 1 MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
Query: 81 WDDIGFGS--------RHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 140
W D FGS R +GRT +G + + ++ LQ Q+ MN LLQSM LSQ+NA + I
Sbjct: 61 WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
Query: 141 HAVKQVNKFIV 143
V QV +V
Sbjct: 121 KVVHQVLNLVV 131
BLAST of CsGy7G011847 vs. ExPASy TrEMBL
Match:
A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)
HSP 1 Score: 331 bits (848), Expect = 1.18e-114
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML
Sbjct: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
Query: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM
Sbjct: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
Query: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT 164
TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT
Sbjct: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT 164
BLAST of CsGy7G011847 vs. ExPASy TrEMBL
Match:
A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)
HSP 1 Score: 168 bits (426), Expect = 7.58e-48
Identity = 86/148 (58.11%), Postives = 108/148 (72.97%), Query Frame = 0
Query: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
M F+QRD+EN+ D W RFKR++K CP H IPECV ME FYFGLSK+T Q N +F GGML
Sbjct: 1 MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60
Query: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRH--------RGRTKEGLDKSVVVVLQGQMIA 120
RSSYNQIK LD+M++NSQEW D FGSR+ RGR ++G+D S++V LQGQ+I
Sbjct: 61 RSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIE 120
Query: 121 MNNLLQSMTLSQVNAANNYIHAVKQVNK 140
MN +LQSM L QVN + + V+QVN+
Sbjct: 121 MN-ILQSMALLQVNVVRSSVQMVQQVNE 147
BLAST of CsGy7G011847 vs. ExPASy TrEMBL
Match:
A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)
HSP 1 Score: 130 bits (327), Expect = 1.26e-35
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 0
Query: 2 IFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLR 61
+F+ RD+EN++D WS KRLVKAC HGI +CV ME FYF LS+D Q V+ +FVGG+LR
Sbjct: 19 VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
Query: 62 SSYNQIKATLDSMSNNSQEWDDIGFGSR-----HRGRTKEGLDKSVVVVLQGQMIAMNNL 117
+SYNQ K LD+M +NSQE D S+ +RGRT EG+D++ +V LQGQ+ MN L
Sbjct: 79 NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138
BLAST of CsGy7G011847 vs. ExPASy TrEMBL
Match:
A0A5D3DR17 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00450 PE=4 SV=1)
HSP 1 Score: 124 bits (312), Expect = 4.52e-32
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 1 MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
M+FKQR+ EN+HD WSRFKR++K C GIPE V MEVFYF LSKDT V +F GGML
Sbjct: 142 MLFKQREGENLHDAWSRFKRIMKFCLPKGIPEYVLMEVFYFKLSKDTQHTVGAVFAGGML 201
Query: 61 RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTK 95
+S YNQIK+ L+SM+ NSQEWDD F SR G K
Sbjct: 202 KSFYNQIKSMLNSMAGNSQEWDDSDFSSRLVGEEK 236
BLAST of CsGy7G011847 vs. ExPASy TrEMBL
Match:
A0A0A0L0Y4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1)
HSP 1 Score: 119 bits (298), Expect = 1.98e-31
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query: 21 LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80
++K C H I CV +E FYFGLS+DT Q V+ +F+GGMLR S N IK TLD+M +NSQE
Sbjct: 1 MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
Query: 81 WDDIGFGS--------RHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 140
W D FGS R +GRT +G + + ++ LQ Q+ MN LLQSM LSQ+NA + I
Sbjct: 61 WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
Query: 141 HAVKQVNKFIV 143
V QV +V
Sbjct: 121 KVVHQVLNLVV 131
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KGN44484.1 | 2.44e-114 | 100.00 | hypothetical protein Csa_015918 [Cucumis sativus] | [more] |
KAA0048713.1 | 1.57e-47 | 58.11 | hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... | [more] |
KAA0046468.1 | 2.61e-35 | 54.55 | hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ9774... | [more] |
KAA0059690.1 | 9.34e-32 | 63.16 | Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK26127.1 Retrotranspos... | [more] |
KGN53801.1 | 4.09e-31 | 49.62 | hypothetical protein Csa_014772 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0K6F9 | 1.18e-114 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1 | [more] |
A0A5D3CC26 | 7.58e-48 | 58.11 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TUE1 | 1.26e-35 | 54.55 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DR17 | 4.52e-32 | 63.16 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A0A0L0Y4 | 1.98e-31 | 49.62 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |