CsGy7G011565 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G011565
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr7: 14577848 .. 14579547 (+)
RNA-Seq Expression	CsGy7G011565
Synteny	CsGy7G011565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAAACTTCCAAATTTAGAACCAAAAGTGGGTGGATTCTGAGATGCATTTCATGGCCTAGTACTCGAGGGAGATCTTTTATTCATATACCCATTGGTGAAGATAAACAGGGGTGGAAAAGCTTTGGAAAAATGTTGGAAGACTTCAAGGACATTCATGAATACAAAATCTGGTTCTCCTCCCAAACCAAGTTCAACACCATTATGAAGCAGCCAACTCATAGTATGAAAGGAAGCTTTACTGTTTCTTATTTCTTTCTATTTTGTTTCCTGATTCTGGTATGAAAAATTTGCATTGATCTATGCGCTTTCTTCTGTTACCATTTATGACATTGCATTGCATTGTTTTGTTTGTCCATTTGCTTCTTCTTGTTATATTTCTTTCTCAGATTTTTATTTTATGTAAGTGTTCTTGTTATTGGTGACTATAGATGACGATTTAGTTGCGAAGTTCACTCTTGAAATTGGTATAGGTGTTCACATTTCAGAAGTTTGTAGAGTGAAATTGTGAACTTTACTCAATTTCAAGATTTTTATCGACATGATATGCTTTACTTATTGTTTTCTTTGTCTAAATTGTGTGTTTTTTTTTTTTTTTTGTTTGATGATTATTAGGATGATTTCCTTTTTTATAGACGAAACTTCAAAACAAAGTTGTTCTAGTCCAGTGTTAGAAAAAAGAAAACCGGTTAAACCACCATCATCGGTGTGGAAACATTTTATAAAAGTAGAAGGATGTGATCCTAAATATCCTAGGGTTGCTTGTAAACATTGTGGGACTTTATATGTTTGTGATTCCAAAAGAAATGGTACAACTAATTTAAAAGGAAATTTAGAGAAATGTAAGAAGTATGTAGATCCATTGGAAGATAATGTTGAAGGAGAGGGAGATTCTAACAGTAGTTTAATGACTACATCCTTTATCAAAGAAAATTGTAGAACAATGCTTGCTAGTATGGTTATCTTGGATGAATTGTCATTTATATTTGTAGGAAGTGAAGGATTTCATCAATTTTGTCGGGCATTAAATCCAAAGTTTGTGATTCCATCCAGAGTAACTAGTGCAAAATATTGTTTGCAAATGTATATGAAGGAGAAAAAAGAAGTTAAAAAGTGTATTAACTCGAAGTGGCCAAAGAGTTTGGTTAACAATGGATACATGGACTTCTGTGCAAAATATTAATTATATGGTTCTTGCACAAGATAATTTTAAATTTTTGTCAAATAGCTAATCATAGAGATACAATAGGTAGAGCCATTGAACAGTGCTTAGAAGGTTGAGGTATTGATAGACTCTTTACTATAACAGTTGATAATGCGAGTTCAAATGACGTAGTCGTTGCATACTTGGTTAAAAAGTTCAGAGGCAGAAATGGATTAGTGTTGGATGGTGAATTTATTCATGTTAGATGTTGTGCATTTGAGAATATGAATCATGACTCTATGGTTTAAATCTCTACTCTCAAATCTTTATTTACACTTTTTTTTGTTTTAAATTGTTAACTTGTTAAATTTTAAATCTTGTTTTTCTAGAATCTTGGAGCACATTGATGGAAGGACTTTGGGTTATACGAACAAGGCAGAAAGTAGACAATGCATTCAATTGTAGGCTTAAGAGAATGTTATGTAGGATTTATGTAAATTGAGAATACTATTTTTTGTGATTTTCTGTCGTAGGAGATTTTTTATTCTTTTTTAAC

mRNA sequence

GTTGAAACTTCCAAATTTAGAACCAAAAGTGGGTGGATTCTGAGATGCATTTCATGGCCTAGTACTCGAGGGAGATCTTTTATTCATATACCCATTGGTGAAGATAAACAGGGGTGGAAAAGCTTTGGAAAAATGTTGGAAGACTTCAAGGACATTCATGAATACAAAATCTGGTTCTCCTCCCAAACCAAGTTCAACACCATTATGAAGCAGCCAACTCATAAATCTTGGAGCACATTGATGGAAGGACTTTGGGTTATACGAACAAGGCAGAAAGTAGACAATGCATTCAATTGTAGGCTTAAGAGAATGTTATGTAGGATTTATGTAAATTGAGAATACTATTTTTTGTGATTTTCTGTCGTAGGAGATTTTTTATTCTTTTTTAAC

Coding sequence (CDS)

ATGTTGGAAGACTTCAAGGACATTCATGAATACAAAATCTGGTTCTCCTCCCAAACCAAGTTCAACACCATTATGAAGCAGCCAACTCATAAATCTTGGAGCACATTGATGGAAGGACTTTGGGTTATACGAACAAGGCAGAAAGTAGACAATGCATTCAATTGTAGGCTTAAGAGAATGTTATGTAGGATTTATGTAAATTGA

Protein sequence

MLEDFKDIHEYKIWFSSQTKFNTIMKQPTHKSWSTLMEGLWVIRTRQKVDNAFNCRLKRMLCRIYVN*

Homology

[Close]

BLAST of CsGy7G011565 vs. NCBI nr
Match: KAE8646175.1 (hypothetical protein Csa_016838 [Cucumis sativus])

HSP 1 Score: 140 bits (353), Expect = 7.74e-42
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MLEDFKDIHEYKIWFSSQTKFNTIMKQPTHKSWSTLMEGLWVIRTRQKVDNAFNCRLKRM 60
          MLEDFKDIHEYKIWFSSQTKFNTIMKQPT+KSWSTLMEGLWVIRTRQKVDNAFNCRLKRM
Sbjct: 1  MLEDFKDIHEYKIWFSSQTKFNTIMKQPTNKSWSTLMEGLWVIRTRQKVDNAFNCRLKRM 60

Query: 61 LCRIYV 66
          LCRIY+
Sbjct: 61 LCRIYI 66

[Close]

BLAST of CsGy7G011565 vs. NCBI nr
Match: KAE8649297.1 (hypothetical protein Csa_015271, partial [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.40e-08
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1  MLEDFKDIHEYKIWFSSQTKFNTIMKQPTH 30
          MLEDFKDI EYKIWFS QTKFNTIMKQPT+
Sbjct: 69 MLEDFKDILEYKIWFSFQTKFNTIMKQPTN 98

[Close]

BLAST of CsGy7G011565 vs. NCBI nr
Match: KAE8646831.1 (hypothetical protein Csa_018324 [Cucumis sativus])

HSP 1 Score: 47.0 bits (110), Expect = 3.24e-04
Identity = 23/66 (34.85%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 1  MLEDFKDIHEYKIWFSSQTKFNTIMKQPTHKSWSTLMEGLWVIRTRQKVDNAFNCRLKRM 60
          ML DFKDIH+Y++WFS+Q+ FN+ MKQ       +  E   + ++++    +F    K+ 
Sbjct: 1  MLGDFKDIHDYELWFSTQSMFNSFMKQQNKSMKGSYAE---IAKSKETPKISFFDTTKQS 60

Query: 61 LCRIYV 66
           C+  V
Sbjct: 61 TCKYLV 63

The following BLAST results are available for this feature:

BLAST of CsGy7G011565 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G011565 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646175.1	7.74e-42	96.97	hypothetical protein Csa_016838 [Cucumis sativus]	[more]
KAE8649297.1	3.40e-08	90.00	hypothetical protein Csa_015271, partial [Cucumis sativus]	[more]
KAE8646831.1	3.24e-04	34.85	hypothetical protein Csa_018324 [Cucumis sativus]	[more]

BLAST of CsGy7G011565 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy7G011565 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G011565.1	CsGy7G011565.1	mRNA