CsGy7G009135 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G009135
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionFlocculation protein FLO11-like
LocationGy14Chr7: 11458358 .. 11458710 (+)
RNA-Seq ExpressionCsGy7G009135
SyntenyCsGy7G009135
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTGTGTCCTTAAGTGGAAGTAAGTTGTACAACGTTGTATTGCCGACGAGTCCGAAATTTCCGATCAACATCGTTCCTGTTTTGTTGTAGTTAATTTGATCTCGTATACAAGGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACGGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTCTTTTTTTTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAG

mRNA sequence

ATGAAGATTGTGTCCTTAAGTGGAAGTAAGTTGTACAACGTTGTATTGCCGACGAGTCCGAAATTTCCGATCAACATCGTTCCTGTTTTGTTGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACGGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTCTTTTTTTTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAG

Coding sequence (CDS)

ATGAAGATTGTGTCCTTAAGTGGAAGTAAGTTGTACAACGTTGTATTGCCGACGAGTCCGAAATTTCCGATCAACATCGTTCCTGTTTTGTTGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACGGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTCTTTTTTTTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAG

Protein sequence

MKIVSLSGSKLYNVVLPTSPKFPINIVPVLLFSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFLNIVHLALFFFFLSHYLRWSNLL*
Homology
BLAST of CsGy7G009135 vs. NCBI nr
Match: KGN44137.1 (hypothetical protein Csa_015624 [Cucumis sativus])

HSP 1 Score: 134 bits (336), Expect = 7.08e-37
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 25  NIVPVLLFSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNS 84
           N++    FSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGN FKGSPALLNS
Sbjct: 109 NLISYTRFSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNS 168

Query: 85  FLNIVHLALFFF 96
           FLNIVHLALFFF
Sbjct: 169 FLNIVHLALFFF 180

BLAST of CsGy7G009135 vs. NCBI nr
Match: XP_008458113.1 (PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 7.72e-12
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 36  SAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFL 86
           S+V +F+PK IREFIVNLP DLNDHG+  + KVHVRG  F+ SP L+N FL
Sbjct: 212 SSVGHFYPKFIREFIVNLPADLNDHGSPEYQKVHVRGKCFEISPTLINRFL 262

BLAST of CsGy7G009135 vs. NCBI nr
Match: KAA0062234.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 8.61e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 35 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFL 86
          ++ V  F+PK IREFIVNLP  L+D+G+  + KVHVRG  F+ SPAL+N FL
Sbjct: 5  ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFL 56

BLAST of CsGy7G009135 vs. NCBI nr
Match: KAA0052179.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 8.61e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 35 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFL 86
          ++ V  F+PK IREFIVNLP  L+D+G+  + KVHVRG  F+ SPAL+N FL
Sbjct: 5  ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFL 56

BLAST of CsGy7G009135 vs. NCBI nr
Match: KAA0046857.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK03289.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 2.85e-10
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 41  FFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFLNI 88
           F+ +L+REFIVNLPTDLND G    HKVHVRG  F  SP LLNSFL +
Sbjct: 284 FYHRLLREFIVNLPTDLNDPGAMEHHKVHVRGLCFNISPTLLNSFLKV 331

BLAST of CsGy7G009135 vs. ExPASy TrEMBL
Match: A0A0A0K752 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 3.43e-37
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 25  NIVPVLLFSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNS 84
           N++    FSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGN FKGSPALLNS
Sbjct: 109 NLISYTRFSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNS 168

Query: 85  FLNIVHLALFFF 96
           FLNIVHLALFFF
Sbjct: 169 FLNIVHLALFFF 180

BLAST of CsGy7G009135 vs. ExPASy TrEMBL
Match: A0A1S3C780 (uncharacterized protein LOC103497643 OS=Cucumis melo OX=3656 GN=LOC103497643 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.74e-12
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 36  SAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFL 86
           S+V +F+PK IREFIVNLP DLNDHG+  + KVHVRG  F+ SP L+N FL
Sbjct: 212 SSVGHFYPKFIREFIVNLPADLNDHGSPEYQKVHVRGKCFEISPTLINRFL 262

BLAST of CsGy7G009135 vs. ExPASy TrEMBL
Match: A0A5A7UFC9 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1855G00010 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.17e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 35 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFL 86
          ++ V  F+PK IREFIVNLP  L+D+G+  + KVHVRG  F+ SPAL+N FL
Sbjct: 5  ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFL 56

BLAST of CsGy7G009135 vs. ExPASy TrEMBL
Match: A0A5A7V4K8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00380 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.17e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 35 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFL 86
          ++ V  F+PK IREFIVNLP  L+D+G+  + KVHVRG  F+ SPAL+N FL
Sbjct: 5  ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFL 56

BLAST of CsGy7G009135 vs. ExPASy TrEMBL
Match: A0A5D3BYZ7 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001190 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.38e-10
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 41  FFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNGFKGSPALLNSFLNI 88
           F+ +L+REFIVNLPTDLND G    HKVHVRG  F  SP LLNSFL +
Sbjct: 284 FYHRLLREFIVNLPTDLNDPGAMEHHKVHVRGLCFNISPTLLNSFLKV 331

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN44137.17.08e-3790.28hypothetical protein Csa_015624 [Cucumis sativus][more]
XP_008458113.17.72e-1264.71PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo][more]
KAA0062234.18.61e-1157.69flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0052179.18.61e-1157.69flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0046857.12.85e-1066.67flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK03289.1 flocculat... [more]
Match NameE-valueIdentityDescription
A0A0A0K7523.43e-3790.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1[more]
A0A1S3C7803.74e-1264.71uncharacterized protein LOC103497643 OS=Cucumis melo OX=3656 GN=LOC103497643 PE=... [more]
A0A5A7UFC94.17e-1157.69Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7V4K84.17e-1157.69Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BYZ71.38e-1066.67Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G009135.1CsGy7G009135.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane