CsGy7G008600 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G008600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RNA-binding protein 48
Location	Gy14Chr7: 10126917 .. 10127691 (-)
RNA-Seq Expression	CsGy7G008600
Synteny	CsGy7G008600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTGATTGTGAGGAAAATCCCAGCATTGGGTTATGGAGATGACTTGCACAAACTGTTCTCCTCCTACAGGAACCTCGAAGAGTAACTTCTATTCTCGTTTCCCTTTTTTAATTAATTCTCGTACTTCCTTTTCTAATTCCTTAGATGGGATGATTCTTTTTTACCGCTCCCTTATCACATGCTTCTCCCATGTTTGATTGGATTAGCTTCTCATAATTTTATTAACTTCTCAGGTGTAAACCCATGGATGCCGAAGAGTGTGATGAATTCACAAATGTTTTTTTGTCAAATTTCATTTGGTCACCAATGCCAGGTATTTGAACCTTTTTCTGGTTTTTCTTTTGTTTCAAACAATGCGTTATTTTGCCCGAGTCTGGAGCGTTATTGTGCCCCAGTTTGAACCATAACAATTTAACTTTGGGTATATCTTTAAGCATGTAATAGGAAATGTATAATAGGAAGATGTTGCTTTGGGTATATCTTTAAGCATGTAATAACTTTTTTATCAGTTGGTAGACCAAGAGGATTTGCAGTTAGTTCAACAACTGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAACAGAAGAACTTTCTCGAAAAGAGGTTTGAGTATATCTTTGCTTTGGGTATATCTTTAAGCATGTAATAACTTTTTTATCAATTGGTAGACTAAGAGGATTTGCAGTTAGTTCAACAACTGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAACAGAAGAACTTTCTCGAAAAGAG

mRNA sequence

TATTTGATTGTGAGGAAAATCCCAGCATTGGGTTATGGAGATGACTTGCACAAACTGTTCTCCTCCTACAGGAACCTCGAAGAGTGTAAACCCATGGATGCCGAAGAGTGTGATGAATTCACAAATGTTTTTTTGTCAAATTTCATTTGGTCACCAATGCCAGTTGGTAGACCAAGAGGATTTGCAGTTAGTTCAACAACTGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAACAGAAGAACTTTCTCGAAAAGAGACTAAGAGGATTTGCAGTTAGTTCAACAACTGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAACAGAAGAACTTTCTCGAAAAGAG

Coding sequence (CDS)

TATTTGATTGTGAGGAAAATCCCAGCATTGGGTTATGGAGATGACTTGCACAAACTGTTCTCCTCCTACAGGAACCTCGAAGAGTGTAAACCCATGGATGCCGAAGAGTGTGATGAATTCACAAATGTTTTTTTGTCAAATTTCATTTGGTCACCAATGCCAGTTGGTAGACCAAGAGGATTTGCAGTTAGTTCAACAACTGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAACAGAAGAACTTTCTCGAAAAGAGACTAAGAGGATTTGCAGTTAGTTCAACAACTGCAAAGCTTACAAATCCTTCTCGCTCTCATTATACTCTTGAACAGAAGAACTTTCTCGAAAAGAG

Protein sequence

YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNFIWSPMPVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKX

Homology

[Close]

BLAST of CsGy7G008600 vs. ExPASy Swiss-Prot
Match: A4FVJ7 (RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-04
Identity = 19/48 (39.58%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF 49
          YL+V+ +PA+G   +L +LF+ Y  +EE +P+D    ++FT V+L  F
Sbjct: 52 YLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAEQFTEVYLIQF 99

[Close]

BLAST of CsGy7G008600 vs. NCBI nr
Match: XP_031736619.1 (RNA-binding protein 48 isoform X4 [Cucumis sativus])

HSP 1 Score: 118 bits (296), Expect = 1.72e-30
Identity = 72/135 (53.33%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRP 60
           YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R 
Sbjct: 54  YLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRK 113

Query: 61  RG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------------GFAVSSTTAKLTNP 120
              F       +++        L+ K  LE R R            G AVSSTTAKLTN 
Sbjct: 114 LDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNQ 173

[Close]

BLAST of CsGy7G008600 vs. NCBI nr
Match: XP_031736618.1 (RNA-binding protein 48 isoform X3 [Cucumis sativus])

HSP 1 Score: 118 bits (296), Expect = 1.76e-30
Identity = 72/135 (53.33%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRP 60
           YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R 
Sbjct: 54  YLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRK 113

Query: 61  RG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------------GFAVSSTTAKLTNP 120
              F       +++        L+ K  LE R R            G AVSSTTAKLTN 
Sbjct: 114 LDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNQ 173

[Close]

BLAST of CsGy7G008600 vs. NCBI nr
Match: XP_004142975.1 (RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical protein Csa_018618 [Cucumis sativus])

HSP 1 Score: 118 bits (296), Expect = 4.88e-30
Identity = 72/135 (53.33%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRP 60
           YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R 
Sbjct: 54  YLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRK 113

Query: 61  RG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------------GFAVSSTTAKLTNP 120
              F       +++        L+ K  LE R R            G AVSSTTAKLTN 
Sbjct: 114 LDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNQ 173

[Close]

BLAST of CsGy7G008600 vs. NCBI nr
Match: XP_011649485.1 (RNA-binding protein 48 isoform X1 [Cucumis sativus])

HSP 1 Score: 118 bits (296), Expect = 4.99e-30
Identity = 72/135 (53.33%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRP 60
           YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R 
Sbjct: 54  YLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRK 113

Query: 61  RG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------------GFAVSSTTAKLTNP 120
              F       +++        L+ K  LE R R            G AVSSTTAKLTN 
Sbjct: 114 LDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNQ 173

[Close]

BLAST of CsGy7G008600 vs. NCBI nr
Match: XP_022997623.1 (RNA-binding protein 48 isoform X3 [Cucurbita maxima])

HSP 1 Score: 115 bits (289), Expect = 1.46e-29
Identity = 71/165 (43.03%), Postives = 84/165 (50.91%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF------------ 60
           YLIVR +PALG GD+L KLFSSY NLEECKPMDAEECDEFT+V+   F            
Sbjct: 22  YLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKRK 81

Query: 61  -----------------------------------IWSPMPVGRPRGFAVSSTTAKLTNP 113
                                              + + +  GRPRG AV+S T K TNP
Sbjct: 82  LDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSATTKFTNP 141

[Close]

BLAST of CsGy7G008600 vs. ExPASy TrEMBL
Match: A0A0A0LQL2 (RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1)

HSP 1 Score: 118 bits (296), Expect = 2.36e-30
Identity = 72/135 (53.33%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRP 60
           YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R 
Sbjct: 54  YLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRK 113

Query: 61  RG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------------GFAVSSTTAKLTNP 120
              F       +++        L+ K  LE R R            G AVSSTTAKLTN 
Sbjct: 114 LDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNQ 173

[Close]

BLAST of CsGy7G008600 vs. ExPASy TrEMBL
Match: A0A6J1KEG7 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 115 bits (289), Expect = 7.09e-30
Identity = 71/165 (43.03%), Postives = 84/165 (50.91%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF------------ 60
           YLIVR +PALG GD+L KLFSSY NLEECKPMDAEECDEFT+V+   F            
Sbjct: 22  YLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKRK 81

Query: 61  -----------------------------------IWSPMPVGRPRGFAVSSTTAKLTNP 113
                                              + + +  GRPRG AV+S T K TNP
Sbjct: 82  LDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSATTKFTNP 141

[Close]

BLAST of CsGy7G008600 vs. ExPASy TrEMBL
Match: A0A6J1K5M2 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 1.92e-29
Identity = 68/154 (44.16%), Postives = 80/154 (51.95%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF------------ 60
           YLIVR +PALG GD+L KLFSSY NLEECKPMDAEECDEFT+V+   F            
Sbjct: 22  YLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKRK 81

Query: 61  -----------------------------------IWSPMPVGRPRGFAVSSTTAKLTNP 107
                                              + + +  GRPRG AV+S T K TNP
Sbjct: 82  LDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSATTKFTNP 141

[Close]

BLAST of CsGy7G008600 vs. ExPASy TrEMBL
Match: A0A6J1K7Z4 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 2.46e-29
Identity = 68/154 (44.16%), Postives = 80/154 (51.95%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF------------ 60
           YLIVR +PALG GD+L KLFSSY NLEECKPMDAEECDEFT+V+   F            
Sbjct: 22  YLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKRK 81

Query: 61  -----------------------------------IWSPMPVGRPRGFAVSSTTAKLTNP 107
                                              + + +  GRPRG AV+S T K TNP
Sbjct: 82  LDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSATTKFTNP 141

[Close]

BLAST of CsGy7G008600 vs. ExPASy TrEMBL
Match: A0A5A7V5K4 (RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002210 PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 2.46e-29
Identity = 70/134 (52.24%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRP 60
           YLIVR +PALG GD LHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R 
Sbjct: 22  YLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRK 81

Query: 61  RG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------------GFAVSSTTAKLTNP 119
              F       +++        ++ K  LE R R            G AVSSTTAKLTNP
Sbjct: 82  LDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP 141

[Close]

BLAST of CsGy7G008600 vs. TAIR 10
Match: AT2G27790.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-13
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF 49
          Y+IVR +PALG GDDL +LF +Y  +EECKPMDAE+C EFT+V+   F
Sbjct: 22 YMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKF 69

[Close]

BLAST of CsGy7G008600 vs. TAIR 10
Match: AT2G27790.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-13
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF 49
          Y+IVR +PALG GDDL +LF +Y  +EECKPMDAE+C EFT+V+   F
Sbjct: 22 YMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKF 69

[Close]

BLAST of CsGy7G008600 vs. TAIR 10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-13
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF 49
           Y+IVR +PALG GDDL +LF +Y  +EECKPMDAE+C EFT+V+   F
Sbjct: 378 YMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKF 425

[Close]

BLAST of CsGy7G008600 vs. TAIR 10
Match: AT5G27300.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-13
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF 49
           Y+IVR +PALG GDDL +LF +Y  +EECKPMDAE+C EFT+V+   F
Sbjct: 353 YMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKF 400

The following BLAST results are available for this feature:

BLAST of CsGy7G008600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FVJ7	4.0e-04	39.58	RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1	[more]

BLAST of CsGy7G008600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736619.1	1.72e-30	53.33	RNA-binding protein 48 isoform X4 [Cucumis sativus]	[more]
XP_031736618.1	1.76e-30	53.33	RNA-binding protein 48 isoform X3 [Cucumis sativus]	[more]
XP_004142975.1	4.88e-30	53.33	RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical pro...	[more]
XP_011649485.1	4.99e-30	53.33	RNA-binding protein 48 isoform X1 [Cucumis sativus]	[more]
XP_022997623.1	1.46e-29	43.03	RNA-binding protein 48 isoform X3 [Cucurbita maxima]	[more]

BLAST of CsGy7G008600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQL2	2.36e-30	53.33	RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1	[more]
A0A6J1KEG7	7.09e-30	43.03	RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1	[more]
A0A6J1K5M2	1.92e-29	44.16	RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1	[more]
A0A6J1K7Z4	2.46e-29	44.16	RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1	[more]
A0A5A7V5K4	2.46e-29	52.24	RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]

BLAST of CsGy7G008600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27790.1	3.7e-13	62.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27790.2	3.7e-13	62.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G27300.1	3.7e-13	62.50	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G27300.2	3.7e-13	62.50	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039599	RNA-binding protein 48	PANTHER	PTHR20957	UNCHARACTERIZED	coord: 1..48
None	No IPR available	PANTHER	PTHR20957:SF0	RNA-BINDING PROTEIN 48	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G008600.2	CsGy7G008600.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding