CsGy7G006580 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G006580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	SWIB domain-containing protein
Location	Gy14Chr7: 4848818 .. 4850771 (-)
RNA-Seq Expression	CsGy7G006580
Synteny	CsGy7G006580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCGCGTTCCGAAATTCGACCTTCTCGAGTTATCGCTCTTACCGCTTCTCCTTCTTCGCTTTATCCATTTTTTGAGAACAACCTTTCGTCACTCACTGCCTTCCGGCCATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGGTAGAATCTCTTTTTCTTTTTCGTTTTCTGTTTTTCTTTTTCTTTCCATGCTGTTTTCATTACTTTTCTTTTATATGTTTTTTTTTTTCTTCAGTGGGGTTGAAAGTTTATGGGGTTTCCATAGTTTTCTAAACCCTCATTTCAGAACCAGATATTGGATGTTGGTCTTTAGAATTTTTCTTGCTGTGTTCTTTCTGGAATGCGGTTTAATGGTTATTAGATAATGTTTTTTCGACTCTTAATGGTTTATTTTGAAGATTGTTTCGATGTGGTTTTTCTTATTAGTGAAGTTTGTATAAGAAAGTGGGAGATGGTTGCTCTGATTTGTTGGGTTCGGAGGAGGTTGTAAGATATATTGGCATGGTTTGAAAATTTCTTGTTCTGAAATAATGGTTTTGGATTGTTGGTCTTTAGAATTTTCTTGCTGTGTTGTTGTTAGAGTGTGCTTTGATGATCATTGGATGAAAGCTTTTAACAACTCTTAATGCATTATTTTGGAGAGGGTTTAGATGTGGCAAGTGGATAGTAATGCTTGTTACTGGGTTTGAGGCCTTTAAGGTTTCTGAAGAGCTTTTTCTGTTCTGGGTTTCGTTAACTCTTTTCTGATTTGTACATTTGTTTTCAAAGACATGGAACAGTTCTAGAAAAACATACTTTTGTTTTTCGGTTTTCCATTGTTTCATAGATTGAATCCATTCATTTAATAGCTGTTTTTATGAACATAAACACCTTCTGAAATTTATATTGGTAAAAGGTTCTAATTACAGTATCTCTTTCTGTACTCACCACATGCTCTCATTGCGTAGTTTTTACCCTAATTCCTATACGAGCTTTATCATTCTCCTCTTATTTGCTCTCGCCGTAAACTCTCCCACTTTCTTATGCAATTCTGTTTGTCTAAAAACTCGCTCACCATTTTTTGTTCCCTACCTTTAGCTTTGTCATTTACGTTGGTGATATCTACTTTAGTTCCATGAGTTCTCTTACATTACTGCATTAAACTTGTCCTTGGTGTTTCATAAAAGAACATAAATTGGTTATGATAGTTGATGTCTTACAAATCATTGATTTGAAGCACAGAAACAATTTGTTTTTCTTTTAAATTATTTTCTTTATTCTTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAATTATTCGAAGTATGGAAGATAGACATAATGGACCATCTTTTCAGTCCATGAATATGAACCTTTTTTTTCTTTTTTGGTTGTGGGAGTGTCTCAACTCAGGTATTGCTCACTGAATCATGCAGTTGAGAGCCCACCTTATGATTAGTAGTTGAATAGAGAGAAAGAAAGCCTTTGTAAGAACTATGTTTGGTGGTTTATTGTAGAGATTGTTATATGGAAATCTCGTTTAGTTATTAGTTTTTGGGTATAGTGTTTCACTTTTGTATTATTCTACATGCTTGCTTTTTTTTGTGCTTCC

mRNA sequence

GCGCGCGTTCCGAAATTCGACCTTCTCGAGTTATCGCTCTTACCGCTTCTCCTTCTTCGCTTTATCCATTTTTTGAGAACAACCTTTCGTCACTCACTGCCTTCCGGCCATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAATTATTCGAAGTATGGAAGATAGACATAATGGACCATCTTTTCAGTCCATGAATATGAACCTTTTTTTTCTTTTTTGGTTGTGGGAGTGTCTCAACTCAGGTATTGCTCACTGAATCATGCAGTTGAGAGCCCACCTTATGATTAGTAGTTGAATAGAGAGAAAGAAAGCCTTTGTAAGAACTATGTTTGGTGGTTTATTGTAGAGATTGTTATATGGAAATCTCGTTTAGTTATTAGTTTTTGGGTATAGTGTTTCACTTTTGTATTATTCTACATGCTTGCTTTTTTTTGTGCTTCC

Coding sequence (CDS)

ATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAA

Protein sequence

MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHFL*

Homology

[Close]

BLAST of CsGy7G006580 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 52  KQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIA 111
           K+   P+  P  + KP K+SP+L   +G  ++SR Q +K +W YIK ++LQ P++K+ I 
Sbjct: 107 KRNQDPANNP--LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTIL 166

Query: 112 CDEKLKKIF 121
           CD+KLK +F
Sbjct: 167 CDDKLKSVF 173

[Close]

BLAST of CsGy7G006580 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 70  ISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGK 124
           +S  LQ  +G+ E+ RTQ +K+IW YIKE++LQ P +++ I CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

[Close]

BLAST of CsGy7G006580 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.1e-09
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 65  TKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 122
           T+   +S  L +L+G  E++RT+ ++ +WAYIK +NLQ P+NKK I CDEKL+ I G
Sbjct: 121 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG 177

[Close]

BLAST of CsGy7G006580 vs. ExPASy Swiss-Prot
Match: Q196Z0 (Putative SWIB domain-containing protein 070L OS=Invertebrate iridescent virus 3 OX=345201 GN=IIV3-070L PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.7e-04
Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 0


Query: 63  GITKPRKISPELQALV----GAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKK 122
           G+ KPR IS  +        G  E SR    K + AYIK+N+L+  SNK +I  D KLKK
Sbjct: 97  GLEKPRMISEAMATFADWEYGKTEKSRYDVTKYLCAYIKDNDLRDASNKTIILPDAKLKK 156

Query: 123 IFGGKDEV 127
           +    D V
Sbjct: 157 LLQVDDSV 164

[Close]

BLAST of CsGy7G006580 vs. NCBI nr
Match: XP_004136946.1 (uncharacterized protein LOC101217337 [Cucumis sativus] >KGN43865.1 hypothetical protein Csa_017148 [Cucumis sativus])

HSP 1 Score: 272 bits (695), Expect = 8.64e-92
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 140
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]

BLAST of CsGy7G006580 vs. NCBI nr
Match: XP_008455019.1 (PREDICTED: SWI/SNF complex component SNF12 homolog [Cucumis melo])

HSP 1 Score: 254 bits (648), Expect = 1.41e-84
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSN---LKHLNQLPLPDLRFPRTVTFALASKQATAP 60
           MAFLSTFIAVKPSLLVVKPSPTTSSS+   LKHLNQLPLPDLRFPRTVTFA AS QATAP
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  SREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLK 120
            REPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPS+KKVI CDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 KIFGGKDEVGFLEIAGLISPHFL 140
            IFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

[Close]

BLAST of CsGy7G006580 vs. NCBI nr
Match: XP_038888173.1 (uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida])

HSP 1 Score: 209 bits (532), Expect = 5.71e-67
Identity = 112/140 (80.00%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAFLSTFI+ +PSLLVVK S T +S  +K   QLPLP+LRF RTVTFA AS QATA  R+
Sbjct: 1   MAFLSTFISGEPSLLVVKASATATS--VKQPYQLPLPNLRFARTVTFASASNQATASHRQ 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPS+KKVI CDEKLK IF
Sbjct: 61  PRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 140
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 138

[Close]

BLAST of CsGy7G006580 vs. NCBI nr
Match: XP_022952608.1 (uncharacterized protein LOC111455244 [Cucurbita moschata])

HSP 1 Score: 203 bits (516), Expect = 1.56e-64
Identity = 105/140 (75.00%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAF+STF++ +PSLLV + S   SS  +KH  QLPLP+LRF RT+TFA AS Q TA SR+
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSS--VKHPYQLPLPNLRFSRTITFASASNQTTASSRQ 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRT+ALKVIW +IKE+NLQKPS+KK+I CDEKLKKIF
Sbjct: 61  PRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 140
           GGKDEVGFLEIAGLIS HFL
Sbjct: 121 GGKDEVGFLEIAGLISSHFL 138

[Close]

BLAST of CsGy7G006580 vs. NCBI nr
Match: XP_023553864.1 (uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203 bits (516), Expect = 1.56e-64
Identity = 105/140 (75.00%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAF+STF++ +PSLLV + S   SS  +KH  QLPLP+LRF RT+TFA AS Q TA SR+
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSS--VKHPYQLPLPNLRFSRTITFASASNQTTASSRQ 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRTQALKVIW +IKE+NLQKP++KK+I CDEKLKKIF
Sbjct: 61  PRGIMKPRRISPEMQALVGAPEISRTQALKVIWTHIKEHNLQKPNDKKIIICDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 140
           GGKDEVGFLEIAGLIS HFL
Sbjct: 121 GGKDEVGFLEIAGLISSHFL 138

[Close]

BLAST of CsGy7G006580 vs. ExPASy TrEMBL
Match: A0A0A0K2G6 (Brg-1 associated factor OS=Cucumis sativus OX=3659 GN=Csa_7G071540 PE=4 SV=1)

HSP 1 Score: 272 bits (695), Expect = 4.18e-92
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 140
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]

BLAST of CsGy7G006580 vs. ExPASy TrEMBL
Match: A0A1S3C0N2 (SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103495293 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 6.80e-85
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSN---LKHLNQLPLPDLRFPRTVTFALASKQATAP 60
           MAFLSTFIAVKPSLLVVKPSPTTSSS+   LKHLNQLPLPDLRFPRTVTFA AS QATAP
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  SREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLK 120
            REPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPS+KKVI CDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 KIFGGKDEVGFLEIAGLISPHFL 140
            IFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

[Close]

BLAST of CsGy7G006580 vs. ExPASy TrEMBL
Match: A0A6J1GL33 (uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC111455244 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 7.57e-65
Identity = 105/140 (75.00%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAF+STF++ +PSLLV + S   SS  +KH  QLPLP+LRF RT+TFA AS Q TA SR+
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSS--VKHPYQLPLPNLRFSRTITFASASNQTTASSRQ 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRT+ALKVIW +IKE+NLQKPS+KK+I CDEKLKKIF
Sbjct: 61  PRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 140
           GGKDEVGFLEIAGLIS HFL
Sbjct: 121 GGKDEVGFLEIAGLISSHFL 138

[Close]

BLAST of CsGy7G006580 vs. ExPASy TrEMBL
Match: A0A6J1IAA1 (uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 1.53e-64
Identity = 106/140 (75.71%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAF+STF++ + SLL+ + S   SS  +KH  QLPLP+LRF RT+TFA AS QATA SR+
Sbjct: 1   MAFVSTFVSGELSLLLARASAVVSS--VKHPYQLPLPNLRFSRTITFASASNQATASSRQ 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPS+KK+I CDEKLKKIF
Sbjct: 61  PRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 140
           GGKDEVGFLEIAGLIS HFL
Sbjct: 121 GGKDEVGFLEIAGLISSHFL 138

[Close]

BLAST of CsGy7G006580 vs. ExPASy TrEMBL
Match: A0A6J1JNZ3 (uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 7.13e-61
Identity = 103/140 (73.57%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAF+STFI+ + SLL V+ S T+SS  +KH  Q P  +L F RTVTFA  S QATA  R+
Sbjct: 1   MAFVSTFISGELSLLTVRASATSSS--VKHPYQFPPSNLHFARTVTFASTSNQATASQRQ 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGI KP++ISPE+QALVG PEISRTQALKVIWA+IKE+NLQKPS+KKVI CDEKLK IF
Sbjct: 61  PRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 140
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 138

[Close]

BLAST of CsGy7G006580 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-32
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 5   STFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPS-REPRG 64
           STF+ +K +      +P+T  S+L+  +  P   LR  R VT A  S + TA + R PRG
Sbjct: 9   STFLCIKTTSF---RNPSTPLSSLRFASH-PAAKLRLVRAVTSATESSEPTATNKRVPRG 68

Query: 65  ITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGK 124
           I KPR +SPE+Q +V  PEI+RTQALK IWAYIKE++LQ P NK+ I CDEKLKKIF G+
Sbjct: 69  IMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGR 128

Query: 125 DEVGFLEIAGLISPHFL 141
           D VGFLEIA LI PHFL
Sbjct: 129 DRVGFLEIAKLIGPHFL 141

[Close]

BLAST of CsGy7G006580 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 5.0e-30
Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 3   FLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQ---ATAPSR 62
           F +TF+ V  + L    S   S S+L+     P  +LR  R VT A A+      T  +R
Sbjct: 8   FSTTFLCVDTAPL---RSSMLSPSSLRLSPNHP-TNLRMVRAVTSAAAASSDPTTTTKTR 67

Query: 63  EPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKI 122
           EPRGI KPR +S  +Q +VG PEI RTQALK IWAYIKE++LQ P NK+ I CDEKLKKI
Sbjct: 68  EPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKI 127

Query: 123 FGGKDEVGFLEIAGLISPHFL 141
           F GK+ VGFLEIA LI PHFL
Sbjct: 128 FEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of CsGy7G006580 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-20
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 43  RTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQ 102
           RT+    A+ +A   + E +GI K R +S +L +  G  E++R  ALK +W Y+K +NLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 103 KPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHF 140
            P+NKK I CD+KLK IF GKD+VG  EI  L+SPHF
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

[Close]

BLAST of CsGy7G006580 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 43  RTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQ 102
           R +    AS       R+  GI K   +S  L   +G  E+SRT A+K IW YIK NNLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 103 KPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHF 140
            P NK+ I CDE+LK IF GKD VGFLEI+ L+S HF
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105

[Close]

BLAST of CsGy7G006580 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-19
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 51  SKQATAPSREPR--GITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKK 110
           +K  +   + PR  GI K   +SP L   +G  E SRT A+K IW YIK ++LQ P++K+
Sbjct: 49  AKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKR 108

Query: 111 VIACDEKLKKIFGGKDEVGFLEIAGLISPHFL 141
            I CDE LK IF GKD+VGFLEI+ L+SPHF+
Sbjct: 109 EIFCDETLKLIFEGKDKVGFLEISKLLSPHFV 140

The following BLAST results are available for this feature:

BLAST of CsGy7G006580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	1.6e-09	42.03	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	2.8e-09	50.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	8.1e-09	49.12	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q196Z0	2.7e-04	41.18	Putative SWIB domain-containing protein 070L OS=Invertebrate iridescent virus 3 ...	[more]

BLAST of CsGy7G006580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136946.1	8.64e-92	100.00	uncharacterized protein LOC101217337 [Cucumis sativus] >KGN43865.1 hypothetical ...	[more]
XP_008455019.1	1.41e-84	93.01	PREDICTED: SWI/SNF complex component SNF12 homolog [Cucumis melo]	[more]
XP_038888173.1	5.71e-67	80.00	uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]	[more]
XP_022952608.1	1.56e-64	75.00	uncharacterized protein LOC111455244 [Cucurbita moschata]	[more]
XP_023553864.1	1.56e-64	75.00	uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy7G006580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2G6	4.18e-92	100.00	Brg-1 associated factor OS=Cucumis sativus OX=3659 GN=Csa_7G071540 PE=4 SV=1	[more]
A0A1S3C0N2	6.80e-85	93.01	SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103495293 ...	[more]
A0A6J1GL33	7.57e-65	75.00	uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1IAA1	1.53e-64	75.71	uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082...	[more]
A0A6J1JNZ3	7.13e-61	73.57	uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197...	[more]

BLAST of CsGy7G006580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14880.1	1.1e-32	56.20	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	5.0e-30	54.61	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	2.1e-20	48.45	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.0e-19	50.52	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	4.0e-19	51.09	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 64..140 e-value: 7.7E-31 score: 118.5
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 58..140 e-value: 3.7E-27 score: 96.0
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 60..139
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 66..139 e-value: 3.1E-29 score: 100.6
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 63..140 score: 22.265074
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN-RELATED	coord: 15..140
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 15..140
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 68..139 e-value: 1.35785E-35 score: 115.718

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G006580.2	CsGy7G006580.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus