CsGy7G006307 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G006307
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCysteine-rich and transmembrane domain-containing protein A-like
LocationGy14Chr7: 4672243 .. 4672993 (+)
RNA-Seq ExpressionCsGy7G006307
SyntenyCsGy7G006307
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGAGAAAACACAGAGGAAAATAATGAGTTATTATAACCAGCCACCGCCTTCCGTCGGCGTTCCTCCTCCGCCGCATGGTAACATCTAAGAATCAACCATATTATTACTCTTTCATCATCATCTCTTACATTTAATCTACACTTTGTTTACGAAATTAGGGTTTTGCCAAACACACATACCTATTTTTACTTTTGTTTGAAAATGTTTTTGTCAAACACAAATACAAATTTTTAAGCAAACATACCTTTCATCTCGATTTGACTGATTTTGACGATTTTAGGTTATCCACTATCGACGATGACGCCGTCAGGGTATCCACTGCAGGGCGGCTATCCTCCACAAGGATATCCACCTCCATCGACGCACGGTCATCCTCCACCGCAACATGTACATCAAGACCAAAAGAAAGATGGATGCTTCAAACGCTGGTAAGTGATCTCTTGCTTCTCTTTCATTTTACAACTCTTAAAATGTATTCTTAATTTGTTTTTAATAATATATTTAAATTGTTAAATAGATAATTTTATATTTTAAAAATAAGTTAAATGATTTTTATTATTTATTATATCCTATCAATTTCGTTATAATGAAAACTCAGTTCATTATCATTCACGATGTCCACCTCTTTCAAACGTCGTCTAATACGATATGTTTGTGAAAATTTATTATTATTTAGCCATTTTTTTTATCTTTTTAATTTTCTTGTAAATTTTGTAGGTTTTATGAAATACTTTCGTGGACACCTTAA

mRNA sequence

CAAAGAGAAAACACAGAGGAAAATAATGAGTTATTATAACCAGCCACCGCCTTCCGTCGGCGTTCCTCCTCCGCCGCATGGTTATCCACTATCGACGATGACGCCGTCAGGGTATCCACTGCAGGGCGGCTATCCTCCACAAGGATATCCACCTCCATCGACGCACGGTCATCCTCCACCGCAACATGTACATCAAGACCAAAAGAAAGATGGATGCTTCAAACGCTGGTTTTATGAAATACTTTCGTGGACACCTTAA

Coding sequence (CDS)

ATGAGTTATTATAACCAGCCACCGCCTTCCGTCGGCGTTCCTCCTCCGCCGCATGGTTATCCACTATCGACGATGACGCCGTCAGGGTATCCACTGCAGGGCGGCTATCCTCCACAAGGATATCCACCTCCATCGACGCACGGTCATCCTCCACCGCAACATGTACATCAAGACCAAAAGAAAGATGGATGCTTCAAACGCTGGTTTTATGAAATACTTTCGTGGACACCTTAA

Protein sequence

MSYYNQPPPSVGVPPPPHGYPLSTMTPSGYPLQGGYPPQGYPPPSTHGHPPPQHVHQDQKKDGCFKRWFYEILSWTP*
Homology
BLAST of CsGy7G006307 vs. ExPASy Swiss-Prot
Match: Q8S8M0 (Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis thaliana OX=3702 GN=WIH2 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.8e-08
Identity = 38/81 (46.91%), Postives = 39/81 (48.15%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPP----PPHGYPLSTMTPSGYPLQG--------------GYPPQGYP 60
          MS YNQPP  VGVPP    PP GYP     P GYP QG              GYP QGYP
Sbjct: 1  MSQYNQPP--VGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PPSTHGHPPPQHVHQDQKKDG 64
          PP    +PPP    Q Q   G
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPG 79

BLAST of CsGy7G006307 vs. ExPASy Swiss-Prot
Match: P31356 (Rhodopsin OS=Todarodes pacificus OX=6637 GN=RHO PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 4.4e-04
Identity = 26/43 (60.47%), Postives = 26/43 (60.47%), Query Frame = 0

Query: 9   PSVGVPPPPHGYPLSTMTPSGYPLQGGYPPQGYPPPSTHGHPP 52
           P  G  PPP GYP     P GYP Q GYPPQGYPPP   G PP
Sbjct: 389 PPQGYAPPPQGYPPQGYPPQGYPPQ-GYPPQGYPPP-PQGAPP 429

BLAST of CsGy7G006307 vs. NCBI nr
Match: XP_031745117.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucumis sativus] >KAE8645841.1 hypothetical protein Csa_017279 [Cucumis sativus])

HSP 1 Score: 174 bits (442), Expect = 3.34e-55
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPPPHGYPLSTMTPSGYPLQGGYPPQGYPPPSTHGHPPPQHVHQDQK 60
          MSYYNQPPPSVGVPPPPHGYPLSTMTPSGYPLQGGYPPQGYPPPSTHGHPPPQHVHQDQK
Sbjct: 1  MSYYNQPPPSVGVPPPPHGYPLSTMTPSGYPLQGGYPPQGYPPPSTHGHPPPQHVHQDQK 60

Query: 61 KDGCFKRWFYEILSWTP 77
          KDGCFKRWFYEILSWTP
Sbjct: 61 KDGCFKRWFYEILSWTP 77

BLAST of CsGy7G006307 vs. NCBI nr
Match: KAA0031374.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06826.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.54e-22
Identity = 51/81 (62.96%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPPPHGYPLS-------TMTPSGYPLQGGYPPQGYPPPSTHGHPPPQ 60
          MSYYNQPPP VGVPPP  GYP S       T T SGYPL GGYPPQGYP       PPPQ
Sbjct: 1  MSYYNQPPPPVGVPPP-QGYPSSQGYGPPTTTTASGYPLHGGYPPQGYP-------PPPQ 60

Query: 61 HVHQDQKKDGCFKRWFYEILS 74
          H  Q+QKKDGCF+RW    L 
Sbjct: 61 HD-QNQKKDGCFRRWLITSLK 72

BLAST of CsGy7G006307 vs. NCBI nr
Match: XP_038888865.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 1.62e-19
Identity = 46/76 (60.53%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPPPHGYPLSTMTPS-GYPLQGGYPPQGYPPPSTHGHPPPQHVHQDQ 60
          MSYYNQPPP VGVP P  GYP     P   YP QGGY P GYPPP  +GHPPPQH +Q +
Sbjct: 1  MSYYNQPPPPVGVPLP-QGYPPQGYPPKDAYPPQGGYAPAGYPPPPVYGHPPPQHQNQ-K 60

Query: 61 KKDGCFKRWFYEILSW 75
          ++DG FKR  +EI  W
Sbjct: 61 EEDGFFKRCCHEIFWW 74

BLAST of CsGy7G006307 vs. NCBI nr
Match: PHU21261.1 (Cysteine-rich and transmembrane domain-containing protein 1 [Capsicum chinense])

HSP 1 Score: 72.0 bits (175), Expect = 2.46e-14
Identity = 42/84 (50.00%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPP----PHGYPLSTMTPSGYPLQG----GYPPQGYPPPST--HGHP 60
          MSYYNQ  P VGVPPP    P GYP  +  P GYP QG    GYPPQGYPP     +G P
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYPKDSYPPPGYPQQGYPQQGYPPQGYPPQYAPQYGAP 60

Query: 61 PPQHVHQDQKKDGCFKRWFYEILS 74
          PPQ  HQ     G  + W    +S
Sbjct: 61 PPQQQHQSSSSTGLLQGWIELTMS 84

BLAST of CsGy7G006307 vs. NCBI nr
Match: XP_022148715.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 2.66e-14
Identity = 43/79 (54.43%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPP----PHGYPLSTMTPSGYPLQGGYPP-----QGYPPPS---THG 60
          MSYYNQPPP VGVPPP    P GYP     P GYP Q GYPP     QGYPPP+    +G
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGYPPQAGYPPPGYPPQGYPPPAYGPAYG 60

Query: 61 HPPPQHVHQDQKK---DGC 64
           PPPQ   Q Q     +GC
Sbjct: 61 QPPPQQQQQQQSVGFLEGC 79

BLAST of CsGy7G006307 vs. ExPASy TrEMBL
Match: A0A5D3C924 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001300 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.65e-22
Identity = 51/81 (62.96%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPPPHGYPLS-------TMTPSGYPLQGGYPPQGYPPPSTHGHPPPQ 60
          MSYYNQPPP VGVPPP  GYP S       T T SGYPL GGYPPQGYP       PPPQ
Sbjct: 1  MSYYNQPPPPVGVPPP-QGYPSSQGYGPPTTTTASGYPLHGGYPPQGYP-------PPPQ 60

Query: 61 HVHQDQKKDGCFKRWFYEILS 74
          H  Q+QKKDGCF+RW    L 
Sbjct: 61 HD-QNQKKDGCFRRWLITSLK 72

BLAST of CsGy7G006307 vs. ExPASy TrEMBL
Match: A0A6J1D3P4 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica charantia OX=3673 GN=LOC111017311 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.29e-14
Identity = 43/79 (54.43%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPP----PHGYPLSTMTPSGYPLQGGYPP-----QGYPPPS---THG 60
          MSYYNQPPP VGVPPP    P GYP     P GYP Q GYPP     QGYPPP+    +G
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPEGYPKDAYPPPGYPPQAGYPPPGYPPQGYPPPAYGPAYG 60

Query: 61 HPPPQHVHQDQKK---DGC 64
           PPPQ   Q Q     +GC
Sbjct: 61 QPPPQQQQQQQSVGFLEGC 79

BLAST of CsGy7G006307 vs. ExPASy TrEMBL
Match: A0A6J1I9Y5 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita maxima OX=3661 GN=LOC111470998 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.82e-14
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPP----PHGYP-LSTMTPSGYPLQGGYPPQGYPP----PSTHGHPP 60
          MSYYNQPPP VGVPPP    P GYP      P GYP QGGYPP GYPP    P  +G P 
Sbjct: 1  MSYYNQPPPPVGVPPPQGYPPQGYPPKDAYPPPGYPPQGGYPPAGYPPQGYPPPAYGPPQ 60

Query: 61 PQHVHQDQKK---DGC 64
          PQH +Q ++    +GC
Sbjct: 61 PQHPNQKKEVGFVEGC 76

BLAST of CsGy7G006307 vs. ExPASy TrEMBL
Match: A0A5A7SME1 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001290 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.86e-14
Identity = 41/82 (50.00%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 2  SYYNQPPPSVGVPPP----PHGYP-LSTMTPSGYPLQGGYPPQGYPP----------PST 61
          SYY QPPP VGVPPP    P GYP      P GYP QGGYPP GYPP          P+ 
Sbjct: 3  SYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPQPPYGPAY 62

Query: 62 HGHPPPQHVHQDQKKDGCFKRW 68
           GHPPPQ+ +  +K+ G  + W
Sbjct: 63 GGHPPPQYQNNQKKEVGFVEGW 84

BLAST of CsGy7G006307 vs. ExPASy TrEMBL
Match: A0A6J0MSF4 (cysteine-rich and transmembrane domain-containing protein A-like isoform X1 OS=Raphanus sativus OX=3726 GN=LOC108845806 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.49e-14
Identity = 41/81 (50.62%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPPP----PHGYPLSTMTPSGYPLQGGYPPQGYPPPSTHGHPPPQHVH 60
          M+ YNQPP  VGVPPP    P GYP     P GYP QG YP QGYPPP    +PPPQ   
Sbjct: 1  MTQYNQPP--VGVPPPQGYPPEGYPPQGYPPQGYPQQG-YPQQGYPPPYAPQYPPPQQNQ 60

Query: 61 QDQKKD---GCFKRWFYEILS 74
          Q Q++    GC + W+++I+S
Sbjct: 61 QPQQQSSTTGCLEGWYFKIIS 78

BLAST of CsGy7G006307 vs. TAIR 10
Match: AT2G41420.1 (proline-rich family protein )

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-09
Identity = 38/81 (46.91%), Postives = 39/81 (48.15%), Query Frame = 0

Query: 1  MSYYNQPPPSVGVPP----PPHGYPLSTMTPSGYPLQG--------------GYPPQGYP 60
          MS YNQPP  VGVPP    PP GYP     P GYP QG              GYP QGYP
Sbjct: 1  MSQYNQPP--VGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PPSTHGHPPPQHVHQDQKKDG 64
          PP    +PPP    Q Q   G
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPG 79

BLAST of CsGy7G006307 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 0

Query: 20 YPLSTMTPSGYPLQGGYPPQGYPPPSTHGHPPPQH 55
          +P+S   P GYP + GYPP GYPPP+  G+PPPQ+
Sbjct: 8  HPVSAPPPQGYPPKEGYPPAGYPPPA--GYPPPQY 40

BLAST of CsGy7G006307 vs. TAIR 10
Match: AT1G31750.1 (proline-rich family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 22/37 (59.46%), Postives = 23/37 (62.16%), Query Frame = 0

Query: 18 HGYPLSTMTP---SGYPLQGGYPPQGYPPPSTHGHPP 52
          HGYP     P     YP  GGYPPQGYPPP  HG+PP
Sbjct: 22 HGYPPGAYPPPPQGAYPPPGGYPPQGYPPP-PHGYPP 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S8M03.8e-0846.91Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis th... [more]
P313564.4e-0460.47Rhodopsin OS=Todarodes pacificus OX=6637 GN=RHO PE=1 SV=2[more]
Match NameE-valueIdentityDescription
XP_031745117.13.34e-55100.00cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucumis sat... [more]
KAA0031374.17.54e-2262.96cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v... [more]
XP_038888865.11.62e-1960.53cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa h... [more]
PHU21261.12.46e-1450.00Cysteine-rich and transmembrane domain-containing protein 1 [Capsicum chinense][more]
XP_022148715.12.66e-1454.43cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica c... [more]
Match NameE-valueIdentityDescription
A0A5D3C9243.65e-2262.96Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
A0A6J1D3P41.29e-1454.43cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica... [more]
A0A6J1I9Y54.82e-1455.26cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita... [more]
A0A5A7SME15.86e-1450.00Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
A0A6J0MSF47.49e-1450.62cysteine-rich and transmembrane domain-containing protein A-like isoform X1 OS=R... [more]
Match NameE-valueIdentityDescription
AT2G41420.12.7e-0946.91proline-rich family protein [more]
AT3G49845.11.2e-0457.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G31750.12.0e-0459.46proline-rich family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G006307.1CsGy7G006307.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane