CsGy7G005492 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G005492
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	STE20/SPS1-related proline-alanine-rich protein kinase-like
Location	Gy14Chr7: 4036584 .. 4036847 (+)
RNA-Seq Expression	CsGy7G005492
Synteny	CsGy7G005492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAAGAAGCTTCCTCGTTCTTCTTCTAGTGCTCGCTTTGGTAGCCTCTTCCGCTACGGCAGGGCATCATCATTCACACCCCAAGTCCCCGGCCCCTGCACCTTCTCCAGCCGTTGTGGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGGACTCCTGTTGAGGCGCCTGCTCCGGCAGCAAACGGCGCTGGTCTTGTTTCTGGATCAATGGCTGTTAGTGTTGGGATCTTTTTTGCTGCTGCTTTGTTTGTTTAG

mRNA sequence

ATGGCTTCAAGAAGCTTCCTCGTTCTTCTTCTAGTGCTCGCTTTGGTAGCCTCTTCCGCTACGGCAGGGCATCATCATTCACACCCCAAGTCCCCGGCCCCTGCACCTTCTCCAGCCGTTGTGGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGGACTCCTGTTGAGGCGCCTGCTCCGGCAGCAAACGGCGCTGGTCTTGTTTCTGGATCAATGGCTGTTAGTGTTGGGATCTTTTTTGCTGCTGCTTTGTTTGTTTAG

Coding sequence (CDS)

ATGGCTTCAAGAAGCTTCCTCGTTCTTCTTCTAGTGCTCGCTTTGGTAGCCTCTTCCGCTACGGCAGGGCATCATCATTCACACCCCAAGTCCCCGGCCCCTGCACCTTCTCCAGCCGTTGTGGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGGACTCCTGTTGAGGCGCCTGCTCCGGCAGCAAACGGCGCTGGTCTTGTTTCTGGATCAATGGCTGTTAGTGTTGGGATCTTTTTTGCTGCTGCTTTGTTTGTTTAG

Protein sequence

MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPAPAANGAGLVSGSMAVSVGIFFAAALFV*

Homology

[Close]

BLAST of CsGy7G005492 vs. NCBI nr
Match: KGN43805.2 (hypothetical protein Csa_017194, partial [Cucumis sativus])

HSP 1 Score: 150 bits (379), Expect = 4.31e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
           MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA
Sbjct: 90  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 149

Query: 61  PAANGAGLVSGSMAVSVGIFFAAALFV 87
           PAANGAGLVSGSMAVSVGIFFAAALFV
Sbjct: 150 PAANGAGLVSGSMAVSVGIFFAAALFV 176

[Close]

BLAST of CsGy7G005492 vs. NCBI nr
Match: XP_023554722.1 (uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.7 bits (221), Expect = 3.21e-21
Identity = 61/90 (67.78%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
          MASRSFLV+LL++ALVAS A AGHHH+H KSPAPAPSP V EAP  P  S    PV APA
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEAPLAPAPS----PVSAPA 60

Query: 61 PAANGAGLV----SGSMAVSVGIFFAAALF 86
          PA +GAG++    +GSMAV VGIF AAALF
Sbjct: 61 PAESGAGVIGTGFAGSMAVGVGIF-AAALF 85

[Close]

BLAST of CsGy7G005492 vs. NCBI nr
Match: KAG6571852.1 (hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 5.30e-20
Identity = 60/90 (66.67%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
          MASRSFLV+LL++ALVAS A AGHHH+H KSPAPAPSP V EA   P  S    PV APA
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPS----PVSAPA 60

Query: 61 PAANGAGLV----SGSMAVSVGIFFAAALF 86
          PA +GAG++    +GSMAV VGIF AAALF
Sbjct: 61 PAESGAGVIGTGFAGSMAVGVGIF-AAALF 85

[Close]

BLAST of CsGy7G005492 vs. NCBI nr
Match: XP_022952911.1 (STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 1.07e-19
Identity = 60/90 (66.67%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
          MASRSFLV LL++ALVAS A AGHHH+H KSPAPAPSP V EA   P  S    PV APA
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPS----PVSAPA 60

Query: 61 PAANGAGLV----SGSMAVSVGIFFAAALF 86
          PA +GAG++    +GSMAV VGIF AAALF
Sbjct: 61 PAESGAGVIGTGFAGSMAVGVGIF-AAALF 85

[Close]

BLAST of CsGy7G005492 vs. NCBI nr
Match: XP_008237293.1 (PREDICTED: classical arabinogalactan protein 1 [Prunus mume])

HSP 1 Score: 46.6 bits (109), Expect = 7.01e-04
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 34  PAPSPAVVEAPSVPPSSISGTPVEAPAPAANGAGL--VSGSMAVSVGIFFA 82
           P+P  A  E+P++PPSS+SG P EAPAPA NGAGL   S + +V+VG+F A
Sbjct: 75  PSPPSASPESPAIPPSSVSGPPSEAPAPATNGAGLNRFSAAGSVAVGVFAA 125

[Close]

BLAST of CsGy7G005492 vs. ExPASy TrEMBL
Match: A0A0A0K427 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 1.36e-45
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
          MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAANGAGLVSGSMAVSVGIFFAAALFV 87
          PAANGAGLVSGSMAVSVGIFFAAALFV
Sbjct: 61 PAANGAGLVSGSMAVSVGIFFAAALFV 87

[Close]

BLAST of CsGy7G005492 vs. ExPASy TrEMBL
Match: A0A6J1GLJ6 (STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschata OX=3662 GN=LOC111455452 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.17e-20
Identity = 60/90 (66.67%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
          MASRSFLV LL++ALVAS A AGHHH+H KSPAPAPSP V EA   P  S    PV APA
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPS----PVSAPA 60

Query: 61 PAANGAGLV----SGSMAVSVGIFFAAALF 86
          PA +GAG++    +GSMAV VGIF AAALF
Sbjct: 61 PAESGAGVIGTGFAGSMAVGVGIF-AAALF 85

The following BLAST results are available for this feature:

BLAST of CsGy7G005492 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G005492 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43805.2	4.31e-44	100.00	hypothetical protein Csa_017194, partial [Cucumis sativus]	[more]
XP_023554722.1	3.21e-21	67.78	uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo]	[more]
KAG6571852.1	5.30e-20	66.67	hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952911.1	1.07e-19	66.67	STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata]	[more]
XP_008237293.1	7.01e-04	56.86	PREDICTED: classical arabinogalactan protein 1 [Prunus mume]	[more]

BLAST of CsGy7G005492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K427	1.36e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1	[more]
A0A6J1GLJ6	5.17e-20	66.67	STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschat...	[more]

BLAST of CsGy7G005492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G005492.1	CsGy7G005492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding