CsGy7G005150 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G005150
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	serine/arginine-rich splicing factor SC35
Location	Gy14Chr7: 3840143 .. 3844187 (-)
RNA-Seq Expression	CsGy7G005150
Synteny	CsGy7G005150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCTTTTCCAACGACTTTTCTTCTCCATCTTCTTTAACCCTAACCCTAATCTTCTTTCTCTTCCTCTTCCTTACTCAACATGTCTCACTTCGGAAGGTCCGGTCCTCCAGACATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTTCGTGCGTCTCTCTCTCTTTCATTTGTTTTCTGGTTCTGTATCTTATTCAGTTCCCACTCAGATTTTTACGTGGTTTTGTAGGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTGGATATCTTCATCCCCAGAGATCGAAGGTATAATTCCCGTCTCTGTTGCATTTCTATACCCCTTTTCTTGTTATTATTATTTTTATATTCTTGAATTTGTTCGTTTTATGAAGGAGACGATTGAGGTATATTATATATATATATAATAGCTTGGAAGAGTTTCTTGTTAGTTAGGTTGAACGTTTAGGGGTTTACGATTGAATTGATTTCATTTTTATTGATATTTGTTTGGTTCTTATGGAATCAGTTTGTACGTGACGGTGAAATGATATTCTTCGTCAGCTTGAATGCTACTTGGACTTAGTTTGGATTTTTTTTGTCTCCACTGTTTATTCATTTTTTTATTGGGAATACTTTATTCTCGTTTTGACTATTTTGTAATTTTCTTTTATATTATATTGTGGTTCAGGACTGGTGATTCAAGAGGCTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCCCAGAAAGCAGTGGAGAGGCTAGATGGTACACCAGCCACTTCTTTTTTTTGGTTTTTTTTTTCCGTCTCCTGTTTGATTTTGTTATTGTTCTCTCCATGTGCAAGTAATTTGTAGATATGAGTTACAAGGGGAATGCTTGATACTTTTGTTTGAGGAGAGAAGGTTGATTATTGATAGGGCGTTATTCAAATCAGTTTGGAGTTACAAGTTCTATTTTTTCTGAAATTGACGCATTCAGTTCACTGTTATTTCTGCTTTTGAATTTCAATTATGCCTCCATTCCTCACCGTTTGATAAATTCTTAATTTAGTTGGGTCAGGGACTAATCTGCTGCATGTAAATTTATAAACGGATATATGTTTATATATATTTTGATTCTGTTATGTTCCAGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCCAAATATGGTCCAAATGCAGAGAGGATGTGAGTAATGAAGTAGTGGTTTTTTTGCAATAAGTTCTCATATTTAGGCTTGACTTTTAACTTTAGATATATTTGCTTTTCTAATTTATATTGTATTCATGCTTTTAGTCACAAAGGGAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGGTAATTTTCTCTTCCACATCCACTGATCCCCAGGAAATTTCTTTTAAGATGCTATTTTTATTTTTTATATTTTTTTGACATTCAGATTGAATATTTGTTATCCTTGTCCTTGAAGAATCTAATTTGGTCATTGGTGTTTCTTGATGGAGTTATTATTTCACTAGCTTTAGATGTCAAAGGAAAAACCTCCTGTTGGCATAGGATATTTGAAAAAAATGATCCAGCCACATTTTTTGATCCCTCAGATTATTGTGGAACTGTTTCTGCTGTGGTTTATTGTTTACTTTGGCAAAGTTTCGTTTCTGCTATCTCAGATACAAGGTTCAAAGATATTGCGGCCATTGACTTTCATTTTGTACAGTAGCTAAGCTATGTCATGTTATTTAACATGAGATGCCATAATTGTGTAAATGTGAAATATTTTAAGATTTAAAAGGAGATTGTGGTAGTGTATTGCACTCTTCATATTGCTAGGAGTAGGTAGTGGCGCTCAAACCTTTTTACATTCATGGATCCAGGTTTTGTCCATTTTTAAAGCCTCTTATTATTTCACTTGTTTGAATTCTGTACTGGCTAATCTAGTCCATTTATATTTTGATTTTTTCCCCCAAAATCAAGTTACTGATTGATTTTTTTTTTCTTTCAGACATCGGGATGATTACAGAGATAAGGATTATAGGAGGAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCTTGGACAAGAACGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATCAGTCCTAGGCGTCCTAGTCCTGATTACTCAAAGGGAAGGGGAAGAGGACGCTATGATGACGAGCGGAGAAGTCGTAGCCTCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGGTTGTGAAGTTGTAATTTTTATCGAATTGGACAGAAGTTGGGAATTTTATTACTAATAATCTTTATCTTGTTGGGTAAAAGTGGGGATTGGGGAATTTTGTTTCTAAACAGTGTCATTGTTTCGTATATTACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGAAGAAAGTCCTGAAAGAAATGGTAATGGTGTTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCAAGAGGTCGACCTGCTGATTCACGAAGCCCATCACCACAAAATTCAGATGATGTGAGTTGCTTTATGACTTATTTTTTATGATTAGACTAGACTTGGTTTAAGTAGTTAACTGTTCACTTGCTTAATATTGACAGAAGTGAATACGGATGGGAGAAGAACTGTGGACATAACCAAACAGTGCAGGAATGAATGCTTTGAGGACTTGTTGATTAAAAATGTTATCAGACTATAAATTCTAGTTTTGGTAGGACTTTCCTATGGTGTTCAATTCTCATATATTGAGCTTCATGTTCCTATCTACTATCTTGTATCAGTTTGATACTTTTTACCTCTGCAGTCTGTATCCTTATTTCCAGTCATAGGTTATAGCTTTGGGACATGTTCTTCCTTTATATTTCTGTTTCTCTACTCTGTAGTACCAGTACTACTTTGTTTTGAGCAATCGTGGTGTCTTTTTCTTTTCCTGTATTTTCTTTTTTTCTTTTTATATATTTGAGCTATCCTTATTCATCATGAATCCTCTATTGGATTTTATAGTTATGTTCGGGGTAAGAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTGATAGATGGGTGTTCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGACTTTATCAGTATGATTTTGTCTATGAAGTATGATGTTGCTGTGGGAAGTTTCTTAACTAATATTCACTGGATAGAATTGTTGGTAAGGTTTTTGGTCACGTTTAAATGTTTTTTAAAAACTTGATAATACGTTAGGATTTGATGTTTGACCTGATTATCCATTCTGGTCTATCCAAGTTTTGAAAGCACATCACCCGCAAGGAGATCTAGAGGCCTTGATATATAGGTTTGACCCACCTATGTTGATCGATTTTTTTAACACATAGCTGATGATGCATTTGAGAGGTGTTATCGATTGATTTTAATGGTGAAAGTTGGTTCAAGAAAATTTAGCTGCAGGTTTGAACTTTAAGCCATCGTAACATAAGTTTATAGTTTTTCTATGTTATTTGAAGGGGTGGCTTCAAACTCACAGATTTACTATCCCAAACATTTAGATCAATCTCTTGCTGCTTGATGTGGTGACTGACTGTATTGTAGCTTTCGGATTACACAATTGGTGCTGTGCTGTTTGATAGCAGATACGTTTGTTGATGTACGATAGGACATGAGTTCGATTGGCTGTTGCTGCCCTTGTGGGGGGGTGAGGCTGGCAATGATGCTTCAGTTGCTTGGCAATGGCTGTATCGATGCTTGATTTCCTTTAAATAGGAAGGGATCTGCATGTATAAAATGTCTTAACATCTCTCCTGTAAGAAAATTTATTTAATAAGAATTAAATTATAAATTTGCATAATTCGGTTCCATTGCTCACTTTGTTTCGGAGTTTGGTGAATACGGGGGTGGCTGT

mRNA sequence

ACTTCTTTTCCAACGACTTTTCTTCTCCATCTTCTTTAACCCTAACCCTAATCTTCTTTCTCTTCCTCTTCCTTACTCAACATGTCTCACTTCGGAAGGTCCGGTCCTCCAGACATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTTCGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTGGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCAAGAGGCTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCCCAGAAAGCAGTGGAGAGGCTAGATGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCCAAATATGGTCCAAATGCAGAGAGGATTCACAAAGGGAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGACATCGGGATGATTACAGAGATAAGGATTATAGGAGGAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCTTGGACAAGAACGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATCAGTCCTAGGCGTCCTAGTCCTGATTACTCAAAGGGAAGGGGAAGAGGACGCTATGATGACGAGCGGAGAAGTCGTAGCCTCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGAAGAAAGTCCTGAAAGAAATGGTAATGGTGTTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCAAGAGGTCGACCTGCTGATTCACGAAGCCCATCACCACAAAATTCAGATGATAAGTGAATACGGATGGGAGAAGAACTGTGGACATAACCAAACAGTGCAGGAATGAATGCTTTGAGGACTTGTTGATTAAAAATGTTATCAGACTATAAATTCTAGTTTTGTTATGTTCGGGGTAAGAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTGATAGATGGGTGTTCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGACTTTATCAGTATGATTTTGTCTATGAAGTATGATGTTGCTGTGGGAAGTTTCTTAACTAATATTCACTGGATAGAATTGTTGGACATGAGTTCGATTGGCTGTTGCTGCCCTTGTGGGGGGGTGAGGCTGGCAATGATGCTTCAGTTGCTTGGCAATGGCTGTATCGATGCTTGATTTCCTTTAAATAGGAAGGGATCTGCATGTATAAAATGTCTTAACATCTCTCCTGTAAGAAAATTTATTTAATAAGAATTAAATTATAAATTTGCATAATTCGGTTCCATTGCTCACTTTGTTTCGGAGTTTGGTGAATACGGGGGTGGCTGT

Coding sequence (CDS)

ATGTCTCACTTCGGAAGGTCCGGTCCTCCAGACATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTTCGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTGGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCAAGAGGCTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCCCAGAAAGCAGTGGAGAGGCTAGATGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCCAAATATGGTCCAAATGCAGAGAGGATTCACAAAGGGAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGACATCGGGATGATTACAGAGATAAGGATTATAGGAGGAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCTTGGACAAGAACGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATCAGTCCTAGGCGTCCTAGTCCTGATTACTCAAAGGGAAGGGGAAGAGGACGCTATGATGACGAGCGGAGAAGTCGTAGCCTCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGAAGAAAGTCCTGAAAGAAATGGTAATGGTGTTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCAAGAGGTCGACCTGCTGATTCACGAAGCCCATCACCACAAAATTCAGATGATAAGTGA

Protein sequence

MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSPSPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSDDK*

Homology

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BLAST of CsGy7G005150 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.6e-70
Identity = 196/317 (61.83%), Postives = 212/317 (66.88%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRG 180
                               RSRSPRRR RDDYR+KDYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPREESPERNGNGVGGRSPTSR 279
            + SP         S  RSPSPRRSLSPR       SPS +E SPER  N    RSP+  
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN---ERSPSPG 299

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BLAST of CsGy7G005150 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-26
Identity = 113/250 (45.20%), Postives = 140/250 (56.00%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +  S Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRRR R        R RSRSRSRSRS     R R  R + R R  R RSRS         
Sbjct: 123 PRRRRRS-------RSRSRSRSRSRS-----RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSPS 243
            SK R   R   +  S S SRSRSR RSRS        RSP P    S R S S  RS S
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPP---TSKRESNSRSRSKS 217

Query: 244 PREESPERNG 252
           P  +SPE  G
Sbjct: 243 P-PKSPEEEG 217

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BLAST of CsGy7G005150 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-26
Identity = 109/242 (45.04%), Postives = 136/242 (56.20%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRRR R        R RSRSRSRSRS     R R  R + R R  R RSRS         
Sbjct: 123 PRRRRRS-------RSRSRSRSRSRS-----RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSP---RRSPSPRRSLSPRR 241
            SK R   R   +  S S SRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPVSKRESKSRSRSKSPPK 213

[Close]

BLAST of CsGy7G005150 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-26
Identity = 109/242 (45.04%), Postives = 136/242 (56.20%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRRR R        R RSRSRSRSRS     R R  R + R R  R RSRS         
Sbjct: 123 PRRRRRS-------RSRSRSRSRSRS-----RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSP---RRSPSPRRSLSPRR 241
            SK R   R   +  S S SRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPVSKRESKSRSRSKSPPK 213

[Close]

BLAST of CsGy7G005150 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-26
Identity = 109/242 (45.04%), Postives = 136/242 (56.20%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRRR R        R RSRSRSRSRS     R R  R + R R  R RSRS         
Sbjct: 123 PRRRRRS-------RSRSRSRSRSRS-----RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSP---RRSPSPRRSLSPRR 241
            SK R   R   +  S S SRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPVSKRESKSRSRSKSPPK 213

[Close]

BLAST of CsGy7G005150 vs. NCBI nr
Match: XP_004136874.2 (serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothetical protein Csa_017162 [Cucumis sativus])

HSP 1 Score: 512 bits (1318), Expect = 5.07e-182
Identity = 283/284 (99.65%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPREESPERNGNGVG RSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPREESPERNGNGVG-RSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of CsGy7G005150 vs. NCBI nr
Match: XP_008455209.1 (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo])

HSP 1 Score: 503 bits (1295), Expect = 1.62e-178
Identity = 277/284 (97.54%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRSRSRSLD++DRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRS+SRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPR+ESPERNGNG GGRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPRDESPERNGNG-GGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of CsGy7G005150 vs. NCBI nr
Match: XP_038888048.1 (serine/arginine-rich splicing factor SC35 [Benincasa hispida])

HSP 1 Score: 478 bits (1230), Expect = 1.45e-168
Identity = 267/284 (94.01%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRY+SRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYKSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRSRSRS D++DRDRRGRE+ERER++RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSFDRSDRDRRGREKEREREYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSR--GRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRR 240
           DYSKGRGRGRYDDERRSRS SRSRSR  GRSRSVDSGSPGR+SPSPRRSPSPRRSLSPRR
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSRSRSRSRGRSRSVDSGSPGRQSPSPRRSPSPRRSLSPRR 240

Query: 241 SPSPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
           SPSPR  SPERNGNG GGRSPTSRSVSPRGRP DSRSPSPQNSD
Sbjct: 241 SPSPRGGSPERNGNG-GGRSPTSRSVSPRGRPTDSRSPSPQNSD 283

[Close]

BLAST of CsGy7G005150 vs. NCBI nr
Match: XP_022927926.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 445 bits (1144), Expect = 2.33e-155
Identity = 256/294 (87.07%), Postives = 269/294 (91.50%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRS  RSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRS--RSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRS- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPRRSLSPRRS 
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 -----------PSPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
                      PSPR ESPERNG+G  GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDG--GRSPTPRSVSPRGQPADSRSPSPQNSD 290

[Close]

BLAST of CsGy7G005150 vs. NCBI nr
Match: KAG7022543.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443 bits (1140), Expect = 9.48e-155
Identity = 255/294 (86.73%), Postives = 269/294 (91.50%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRS  RSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRS--RSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRS- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSP+RS SPRRSLSPRRS 
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSL 240

Query: 241 -----------PSPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
                      PSPR ESPERNG+G  GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDG--GRSPTPRSVSPRGQPADSRSPSPQNSD 290

[Close]

BLAST of CsGy7G005150 vs. ExPASy TrEMBL
Match: A0A0A0K7C0 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV=1)

HSP 1 Score: 512 bits (1318), Expect = 2.46e-182
Identity = 283/284 (99.65%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPREESPERNGNGVG RSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPREESPERNGNGVG-RSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of CsGy7G005150 vs. ExPASy TrEMBL
Match: A0A1S3C0I4 (serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC103495427 PE=4 SV=1)

HSP 1 Score: 503 bits (1295), Expect = 7.86e-179
Identity = 277/284 (97.54%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRSRSRSLD++DRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRS+SRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPR+ESPERNGNG GGRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPRDESPERNGNG-GGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of CsGy7G005150 vs. ExPASy TrEMBL
Match: A0A6J1EIV3 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=LOC111434683 PE=4 SV=1)

HSP 1 Score: 445 bits (1144), Expect = 1.13e-155
Identity = 256/294 (87.07%), Postives = 269/294 (91.50%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRS  RSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRS--RSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRS- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPRRSLSPRRS 
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 -----------PSPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
                      PSPR ESPERNG+G  GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDG--GRSPTPRSVSPRGQPADSRSPSPQNSD 290

[Close]

BLAST of CsGy7G005150 vs. ExPASy TrEMBL
Match: A0A6J1CKN2 (serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC111012175 PE=4 SV=1)

HSP 1 Score: 442 bits (1137), Expect = 7.95e-155
Identity = 253/284 (89.08%), Postives = 265/284 (93.31%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGT+VDGREITVQFAKYGPNAERIHKGKISEAF K RYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFTKPRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDD RD+DYRRRSRSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDNRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRS--LSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRR 240
           DYSKGRGRGRYDDERRSRS   SRS+SRG+SRSVDS SPGRRS SPRRS      LSP+R
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSCSRSQSRGQSRSVDSASPGRRSASPRRS------LSPQR 240

Query: 241 SPSPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
           SPSPR ESP RNG+G  GR+PT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPSPRGESPVRNGDG--GRTPTPRSVSPRGQPADSRSPSPQNSD 276

[Close]

BLAST of CsGy7G005150 vs. ExPASy TrEMBL
Match: A0A6J1JE82 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LOC111486086 PE=4 SV=1)

HSP 1 Score: 437 bits (1125), Expect = 1.09e-152
Identity = 254/300 (84.67%), Postives = 268/300 (89.33%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RD+YRD+DYRRRSRSRS  RSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDNYRDRDYRRRSRSRS--RSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRS- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPRRSLSPRRS 
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 -----------------PSPREESPERNGNGVGGRSPTSRSVSPRGRPADSRSPSPQNSD 282
                            PSPR ESPERNG+G  GRSPT RSVSPRG+ ADSRSPSPQNSD
Sbjct: 241 SPQRSLSPQRSLSPRRSPSPRGESPERNGDG--GRSPTPRSVSPRGQSADSRSPSPQNSD 296

[Close]

BLAST of CsGy7G005150 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-71
Identity = 196/317 (61.83%), Postives = 212/317 (66.88%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRG 180
                               RSRSPRRR RDDYR+KDYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPREESPERNGNGVGGRSPTSR 279
            + SP         S  RSPSPRRSLSPR       SPS +E SPER  N    RSP+  
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN---ERSPSPG 299

[Close]

BLAST of CsGy7G005150 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-71
Identity = 196/317 (61.83%), Postives = 212/317 (66.88%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRG 180
                               RSRSPRRR RDDYR+KDYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPREESPERNGNGVGGRSPTSR 279
            + SP         S  RSPSPRRSLSPR       SPS +E SPER  N    RSP+  
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN---ERSPSPG 299

[Close]

BLAST of CsGy7G005150 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-14
Identity = 104/285 (36.49%), Postives = 132/285 (46.32%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F ++G V DI++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRR 136
               +A  A   +DG ++ GRE+TV FA+   N ++  + +  E    SR+R R R+P R
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGSRFRDRRRTPPR 156

Query: 137 RHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDH------RRRSRSISPRRP 196
            +                SRSRS       RRGR R R  D+      R   RSISPR  
Sbjct: 157 YY----------------SRSRS----PPPRRGRSRSRSGDYYSPPPRRHHPRSISPREE 216

Query: 197 SPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--RSLSP 256
             D  +   R    D  R RSL+  R + RS S        RSP   RSPSP+  RS+SP
Sbjct: 217 RYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSP 276

Query: 257 RRSPS---PREESPERNGNGVGGRSPTSRSVSPRGRPAD-SRSPS 278
           RRS S    R  SP R+          SRS SP G   D  RSPS
Sbjct: 277 RRSISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDEDRSPS 299

[Close]

BLAST of CsGy7G005150 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-13
Identity = 76/211 (36.02%), Postives = 108/211 (51.18%), Query Frame = 0


Query: 18  LLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERL 77
           LL+ N+      +DL   F ++G + DI++PR+  TG+ RGF FV+Y+YA++A +A++R+
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  DGTMVDGREITVQFAKYG---PNAERIHKG---------KISEAFPKSRYRSRSRS---P 137
           +  ++ GREI + FA+     P   R   G         + S   P+ RYRS SRS   P
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPP 168

Query: 138 RR--RHRDDYRDKDYRRRSRSRSRSRS-LDKNDRDRRGRERERERDHRRRSRSISPRRPS 197
           RR  RH     D  Y  R RSRS SRS L +N+R+ + R     R+     R ++P    
Sbjct: 169 RRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPRE----ERVLTP---- 228

Query: 198 PDYSKGRGRGRYDDERRSRSLSRSRSRGRSR 211
                           RSR LSRSRSR  SR
Sbjct: 229 ---------------IRSRCLSRSRSRSLSR 236

[Close]

BLAST of CsGy7G005150 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-13
Identity = 103/273 (37.73%), Postives = 129/273 (47.25%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVER 76
           SLLV N+      +DL   F ++G V DI++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDKDYR 136
           +DG ++ GRE+TV FA+                      R +    R R R   R +D R
Sbjct: 97  MDGYLLLGRELTVVFAE--------------------ENRKKPTEMRARERGGGRFRD-R 156

Query: 137 RRSRSRSRSRSLDKNDRDRRGRERERERDH------RRRSRSISPRRPSPDYSKGRGRGR 196
           RR+  R  SRS  ++   RRGR R R  D+      R   RSISPR    D  +   R  
Sbjct: 157 RRTPPRYYSRS--RSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSP 216

Query: 197 YDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--RSLSPRRSPS---PREE 256
             D  R RSL+  R + RS S        RSP   RSPSP+  RS+SPRRS S    R  
Sbjct: 217 ASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSR 276

Query: 257 SPERNGNGVGGRSPTSRSVSPRGRPAD-SRSPS 278
           SP R+          SRS SP G   D  RSPS
Sbjct: 277 SPRRSRRSYTPEPARSRSQSPHGGQYDEDRSPS 286

The following BLAST results are available for this feature:

BLAST of CsGy7G005150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	2.6e-70	61.83	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	3.9e-26	45.20	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	6.6e-26	45.04	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	6.6e-26	45.04	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	6.6e-26	45.04	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of CsGy7G005150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136874.2	5.07e-182	99.65	serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothet...	[more]
XP_008455209.1	1.62e-178	97.54	PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo]	[more]
XP_038888048.1	1.45e-168	94.01	serine/arginine-rich splicing factor SC35 [Benincasa hispida]	[more]
XP_022927926.1	2.33e-155	87.07	serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771....	[more]
KAG7022543.1	9.48e-155	86.73	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of CsGy7G005150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7C0	2.46e-182	99.65	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV...	[more]
A0A1S3C0I4	7.86e-179	97.54	serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC10349542...	[more]
A0A6J1EIV3	1.13e-155	87.07	serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CKN2	7.95e-155	89.08	serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1JE82	1.09e-152	84.67	serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CsGy7G005150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	1.8e-71	61.83	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.8e-71	61.83	ortholog of human splicing factor SC35	[more]
AT1G55310.3	3.5e-14	36.49	SC35-like splicing factor 33	[more]
AT5G18810.1	1.0e-13	36.02	SC35-like splicing factor 28	[more]
AT1G55310.1	1.7e-13	37.73	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 6.6E-25 score: 98.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..88 e-value: 1.1E-20 score: 73.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.297218
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 17..90 e-value: 0.0057 score: 25.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..106 e-value: 1.5E-27 score: 98.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..277
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 1..282
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..282
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G005150.2	CsGy7G005150.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding