CsGy7G004310 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G004310
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10
Location	Gy14Chr7: 3240415 .. 3240984 (+)
RNA-Seq Expression	CsGy7G004310
Synteny	CsGy7G004310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTGAAGGATCATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTGGTGGTGGAAGTACTCATGGATCAACAACCCCAAGTAGATATGAATCACAAAAAAGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTATTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAAAATGGTGGTTCTCAAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGATGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGACTACTATTAGTCAAACCAAGGGATCAGGAGGTCATGATGATCAAGATTCTAGCTCAACCTCCATGATGCACTTTGTGCCTTGA

mRNA sequence

ATGTCAATTGAAGGATCATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTGGTGGTGGAAGTACTCATGGATCAACAACCCCAAGTAGATATGAATCACAAAAAAGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTATTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAAAATGGTGGTTCTCAAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGATGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGACTACTATTAGTCAAACCAAGGGATCAGGAGGTCATGATGATCAAGATTCTAGCTCAACCTCCATGATGCACTTTGTGCCTTGA

Coding sequence (CDS)

ATGTCAATTGAAGGATCATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTGGTGGTGGAAGTACTCATGGATCAACAACCCCAAGTAGATATGAATCACAAAAAAGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTATTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAAAATGGTGGTTCTCAAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGATGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGACTACTATTAGTCAAACCAAGGGATCAGGAGGTCATGATGATCAAGATTCTAGCTCAACCTCCATGATGCACTTTGTGCCTTGA

Protein sequence

MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSSSTSMMHFVP*

Homology

[Close]

BLAST of CsGy7G004310 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-71
Identity = 135/176 (76.70%), Postives = 144/176 (81.82%), Query Frame = 0


Query: 8   ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVL 67
           +S     G S     GS     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL
Sbjct: 1   MSSPRERGKSLMESSGS-EPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVL 60

Query: 68  EFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQ 127
           +FLRYLDQFGKTKVH+ GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG  
Sbjct: 61  DFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPP 120

Query: 128 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSSSTS 184
           ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK    +    GG +D  SSS+S
Sbjct: 121 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEM--GGGREDSSSSSSS 173

[Close]

BLAST of CsGy7G004310 vs. ExPASy Swiss-Prot
Match: B8AH02 (Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.8e-57
Identity = 112/171 (65.50%), Postives = 131/171 (76.61%), Query Frame = 0


Query: 5   GSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCN 64
           G       S G+SSS+GGG+     TPSRYE+QKRRDWNTF QYL+N RPP+ L+ C+  
Sbjct: 46  GDGAGGSSSAGASSSAGGGAA-TPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGA 105

Query: 65  QVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 124
            VLEFLRYLDQFGKTKVH   C F+G P PPAPC CPLRQAWGSLDAL+GRLRAA+EENG
Sbjct: 106 HVLEFLRYLDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG 165

Query: 125 GSQETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKKTTISQTKGSGGH 175
           G  E+NPFA  A+R+YLR+VRE QA+ARG+ Y KKK+KK   + T G GGH
Sbjct: 166 GRPESNPFAVRAVRLYLREVREHQARARGVSYEKKKRKKPQPADTSGGGGH 215

[Close]

BLAST of CsGy7G004310 vs. ExPASy Swiss-Prot
Match: Q0DZF3 (Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.8e-57
Identity = 112/171 (65.50%), Postives = 131/171 (76.61%), Query Frame = 0


Query: 5   GSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCN 64
           G       S G+SSS+GGG+     TPSRYE+QKRRDWNTF QYL+N RPP+ L+ C+  
Sbjct: 46  GDGAGGSSSAGASSSAGGGAA-TPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGA 105

Query: 65  QVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 124
            VLEFLRYLDQFGKTKVH   C F+G P PPAPC CPLRQAWGSLDAL+GRLRAA+EENG
Sbjct: 106 HVLEFLRYLDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG 165

Query: 125 GSQETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKKTTISQTKGSGGH 175
           G  E+NPFA  A+R+YLR+VRE QA+ARG+ Y KKK+KK   + T G GGH
Sbjct: 166 GRPESNPFAVRAVRLYLREVREHQARARGVSYEKKKRKKPQPADTSGGGGH 215

[Close]

BLAST of CsGy7G004310 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-57
Identity = 112/175 (64.00%), Postives = 133/175 (76.00%), Query Frame = 0


Query: 15  GSSSSSGGGSTHGSTTP------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLE 74
           G SS++ GG+   +  P      SRYESQKRRDWNTF QYL+N RPP+ L+ C+   V+E
Sbjct: 7   GPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIE 66

Query: 75  FLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQE 134
           FLRYLDQFGKTKVH  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEE+GG+ E
Sbjct: 67  FLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPE 126

Query: 135 TNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSSSTS 184
           +NPFA+ A+R+YLR+VR+ QAKARGIPY+KKK+K   SQ     G +   SSS +
Sbjct: 127 SNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR--SQAAQPAGVEPSGSSSAA 179

[Close]

BLAST of CsGy7G004310 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-57
Identity = 112/175 (64.00%), Postives = 133/175 (76.00%), Query Frame = 0


Query: 15  GSSSSSGGGSTHGSTTP------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLE 74
           G SS++ GG+   +  P      SRYESQKRRDWNTF QYL+N RPP+ L+ C+   V+E
Sbjct: 7   GPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIE 66

Query: 75  FLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQE 134
           FLRYLDQFGKTKVH  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEE+GG+ E
Sbjct: 67  FLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPE 126

Query: 135 TNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSSSTS 184
           +NPFA+ A+R+YLR+VR+ QAKARGIPY+KKK+K   SQ     G +   SSS +
Sbjct: 127 SNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR--SQAAQPAGVEPSGSSSAA 179

[Close]

BLAST of CsGy7G004310 vs. NCBI nr
Match: XP_004136831.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN43628.1 hypothetical protein Csa_017146 [Cucumis sativus])

HSP 1 Score: 389 bits (999), Expect = 1.53e-136
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180
           EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180

Query: 181 STSMMHFVP 189
           STSMMHFVP
Sbjct: 181 STSMMHFVP 189

[Close]

BLAST of CsGy7G004310 vs. NCBI nr
Match: XP_008455303.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo])

HSP 1 Score: 372 bits (954), Expect = 1.08e-129
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MSIEGS ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGS-ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT-TISQTKGSGGHDDQDS 180
           EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT TI+QTKG GGHDDQDS
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKG-GGHDDQDS 180

Query: 181 SSTSMMHFVP 189
           SSTSMMHFVP
Sbjct: 181 SSTSMMHFVP 188

[Close]

BLAST of CsGy7G004310 vs. NCBI nr
Match: KAA0031563.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa] >TYK07014.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa])

HSP 1 Score: 371 bits (953), Expect = 1.59e-129
Identity = 186/191 (97.38%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MSIEGS ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGS-ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT--TISQTKGSGGHDDQD 180
           EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT  TI+QTKG GGHDDQD
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKG-GGHDDQD 180

Query: 181 SSSTSMMHFVP 189
           SSSTSMMHFVP
Sbjct: 181 SSSTSMMHFVP 189

[Close]

BLAST of CsGy7G004310 vs. NCBI nr
Match: XP_038887380.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Benincasa hispida])

HSP 1 Score: 343 bits (881), Expect = 1.62e-118
Identity = 175/193 (90.67%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSG----GGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPV 60
           MSIEGS ISKDF EGSSSSS     GGS+HGSTTPSRYESQKRRDWNTFCQYLKNQRPPV
Sbjct: 1   MSIEGS-ISKDFYEGSSSSSSPQASGGSSHGSTTPSRYESQKRRDWNTFCQYLKNQRPPV 60

Query: 61  PLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRL 120
           PLSHCN NQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPP PCTCPLRQAWGSLDALIGRL
Sbjct: 61  PLSHCNSNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPNPCTCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDD 180
           RAAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTT S ++  GG DD
Sbjct: 121 RAAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTT-STSQPKGGGDD 180

Query: 181 QDSSSTSMMHFVP 189
           Q+SSSTSMMHFVP
Sbjct: 181 QESSSTSMMHFVP 191

[Close]

BLAST of CsGy7G004310 vs. NCBI nr
Match: XP_022988968.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 308 bits (790), Expect = 7.61e-105
Identity = 156/189 (82.54%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MS EG S  KDFSEGSSS+S      G   PSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSFEGGS--KDFSEGSSSTSS--PQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           C+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180
           EE+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TT +Q+KG+         
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGA-------ED 178

Query: 181 STSMMHFVP 189
           STSMMHFVP
Sbjct: 181 STSMMHFVP 178

[Close]

BLAST of CsGy7G004310 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 389 bits (999), Expect = 7.42e-137
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180
           EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180

Query: 181 STSMMHFVP 189
           STSMMHFVP
Sbjct: 181 STSMMHFVP 189

[Close]

BLAST of CsGy7G004310 vs. ExPASy TrEMBL
Match: A0A1S3C1B9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495500 PE=3 SV=1)

HSP 1 Score: 372 bits (954), Expect = 5.22e-130
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MSIEGS ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGS-ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT-TISQTKGSGGHDDQDS 180
           EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT TI+QTKG GGHDDQDS
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKG-GGHDDQDS 180

Query: 181 SSTSMMHFVP 189
           SSTSMMHFVP
Sbjct: 181 SSTSMMHFVP 188

[Close]

BLAST of CsGy7G004310 vs. ExPASy TrEMBL
Match: A0A5D3C6X1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003300 PE=3 SV=1)

HSP 1 Score: 371 bits (953), Expect = 7.69e-130
Identity = 186/191 (97.38%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MSIEGS ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGS-ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT--TISQTKGSGGHDDQD 180
           EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT  TI+QTKG GGHDDQD
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKG-GGHDDQD 180

Query: 181 SSSTSMMHFVP 189
           SSSTSMMHFVP
Sbjct: 181 SSSTSMMHFVP 189

[Close]

BLAST of CsGy7G004310 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 308 bits (790), Expect = 3.68e-105
Identity = 156/189 (82.54%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MS EG S  KDFSEGSSS+S      G   PSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSFEGGS--KDFSEGSSSTSS--PQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           C+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180
           EE+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TT +Q+KG+         
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGA-------ED 178

Query: 181 STSMMHFVP 189
           STSMMHFVP
Sbjct: 181 STSMMHFVP 178

[Close]

BLAST of CsGy7G004310 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 308 bits (788), Expect = 7.69e-105
Identity = 157/189 (83.07%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MS EG   +KDFSEGSSS+S      G + PSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSFEG--ATKDFSEGSSSTSS--PQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           C+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180
           EE+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTT   T  S G +D    
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTT--TNQSKGAED---- 179

Query: 181 STSMMHFVP 189
           STSMMHFVP
Sbjct: 181 STSMMHFVP 179

[Close]

BLAST of CsGy7G004310 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 270.8 bits (691), Expect = 8.4e-73
Identity = 135/176 (76.70%), Postives = 144/176 (81.82%), Query Frame = 0


Query: 8   ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVL 67
           +S     G S     GS     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL
Sbjct: 1   MSSPRERGKSLMESSGS-EPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVL 60

Query: 68  EFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQ 127
           +FLRYLDQFGKTKVH+ GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG  
Sbjct: 61  DFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPP 120

Query: 128 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSSSTS 184
           ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK    +    GG +D  SSS+S
Sbjct: 121 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEM--GGGREDSSSSSSS 173

[Close]

BLAST of CsGy7G004310 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 270.8 bits (691), Expect = 8.4e-73
Identity = 135/176 (76.70%), Postives = 144/176 (81.82%), Query Frame = 0


Query: 8   ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVL 67
           +S     G S     GS     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL
Sbjct: 1   MSSPRERGKSLMESSGS-EPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVL 60

Query: 68  EFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQ 127
           +FLRYLDQFGKTKVH+ GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG  
Sbjct: 61  DFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPP 120

Query: 128 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSSSTS 184
           ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK    +    GG +D  SSS+S
Sbjct: 121 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEM--GGGREDSSSSSSS 173

[Close]

BLAST of CsGy7G004310 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-57
Identity = 102/154 (66.23%), Postives = 123/154 (79.87%), Query Frame = 0


Query: 30  TPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFY 89
           TPSRYESQKRRDWNTF QYLKN +PP+ LS C+   V+EFL+YLDQFGKTKVH+  C ++
Sbjct: 28  TPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYF 87

Query: 90  GQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQETNPFASGAIRVYLRDVRECQA 149
           G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEENGG  ++NPFA+ A+R+YLR+VRE QA
Sbjct: 88  GHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQA 147

Query: 150 KARGIPYKKKKKK-----TTISQTKGSGGHDDQD 179
           KARGIPY+KKK+K     TT+     S    D D
Sbjct: 148 KARGIPYEKKKRKRPPTVTTVRVDVASSRQSDGD 181

[Close]

BLAST of CsGy7G004310 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-57
Identity = 112/186 (60.22%), Postives = 134/186 (72.04%), Query Frame = 0


Query: 6   SSISKDFSEGSS--SSSGGGSTHGSTTP------SRYESQKRRDWNTFCQYLKNQRPPVP 65
           S+  K  +EGSS   S      H   +P      SRYESQKRRDWNTFCQYL+NQ+PPV 
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVH 64

Query: 66  LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR 125
           +S C  N +L+FL+YLDQFGKTKVHI GC+F+GQ EP   C CPL+QAWGSLDALIGRLR
Sbjct: 65  ISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLR 124

Query: 126 AAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQ 184
           AA+EENGG  E NPFA G IRV+LR+VR+ QAKARG+PYKK+KK+   +  K   G D  
Sbjct: 125 AAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGT 184

[Close]

BLAST of CsGy7G004310 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-57
Identity = 108/150 (72.00%), Postives = 123/150 (82.00%), Query Frame = 0


Query: 13  SEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRY 72
           +  SSSSS GGS  G+   SRYE+QKRRDWNTF QYL+N RPP+ LS C+   VLEFLRY
Sbjct: 30  TSSSSSSSSGGS--GTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRY 89

Query: 73  LDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQETNPF 132
           LDQFGKTKVH   C F+G P PPAPC CPLRQAWGSLDALIGRLRAA+EENGGS ETNPF
Sbjct: 90  LDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPF 149

Query: 133 ASGAIRVYLRDVRECQAKARGIPYKKKKKK 163
            + A+R+YLR+VR+ QAKARGI Y+KKK+K
Sbjct: 150 GARAVRLYLREVRDSQAKARGISYEKKKRK 177

The following BLAST results are available for this feature:

BLAST of CsGy7G004310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	1.2e-71	76.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
B8AH02	2.8e-57	65.50	Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1	[more]
Q0DZF3	2.8e-57	65.50	Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1	[more]
A2XED8	3.7e-57	64.00	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	3.7e-57	64.00	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]

BLAST of CsGy7G004310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136831.1	1.53e-136	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN43628.1 hypoth...	[more]
XP_008455303.1	1.08e-129	97.89	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo]	[more]
KAA0031563.1	1.59e-129	97.38	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa] >TYK07014...	[more]
XP_038887380.1	1.62e-118	90.67	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Benincasa hispida]	[more]
XP_022988968.1	7.61e-105	82.54	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]

BLAST of CsGy7G004310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2D1	7.42e-137	100.00	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]
A0A1S3C1B9	5.22e-130	97.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A5D3C6X1	7.69e-130	97.38	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1JNV9	3.68e-105	82.54	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EWG4	7.69e-105	83.07	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of CsGy7G004310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	8.4e-73	76.70	Protein of unknown function (DUF640)	[more]
AT2G42610.2	8.4e-73	76.70	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.0e-57	66.23	Protein of unknown function (DUF640)	[more]
AT1G78815.1	2.2e-57	60.22	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.2e-57	72.00	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 30..146 e-value: 2.3E-64 score: 215.2
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 33..160 score: 77.43972
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..189
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	coord: 8..181
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 8..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G004310.1	CsGy7G004310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus