CsGy7G004090 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G004090
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionphotosystem II repair protein PSB27-H1, chloroplastic
LocationGy14Chr7: 3060576 .. 3061601 (+)
RNA-Seq ExpressionCsGy7G004090
SyntenyCsGy7G004090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTAGCATTGGGCCTAATGAATATGGGCTTCTTAACTTATATAGTTTTTGAGTCCATTATTCTCCCAAATGAACAAGAAAGTGAAGATCTAAACCTTATATCTCATTGGTCCATCCCTCATCCATAAGTCCAACAAATAAGATAAGACGATAAGCACACGTGGCAATCACCCAATTCCTCCAAATTTTTTTCTAACTAAACAATCCATCTTCACATTTCATTTCCCCTTCTCCTCTTCCAAAACTCCAATTTCCCCAAAATCATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCACCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTATTAAGAGGGAGATGAAAATTTATGTGAGGCTTTTTCATTCTTTTGCTCTTTGTATTTTTATTTAATTTTTTCTTCCCAAGTATTGGAGTTTAACGTTTATGGGTTATGTAAGTATAGAATTTGGGGATTCACAATTTGTGAATTTACAAGAGGAAAATATTCTAAATTTATCTAAGATTAATAGAGACCGGACTTTATATCTTGATTAGTTGGATGGATTTAGTAAATTATGCATGAGATAATAATGTTACATGTTTTAGTTCATAAC

mRNA sequence

GCTTAGCATTGGGCCTAATGAATATGGGCTTCTTAACTTATATAGTTTTTGAGTCCATTATTCTCCCAAATGAACAAGAAAGTGAAGATCTAAACCTTATATCTCATTGGTCCATCCCTCATCCATAAGTCCAACAAATAAGATAAGACGATAAGCACACGTGGCAATCACCCAATTCCTCCAAATTTTTTTCTAACTAAACAATCCATCTTCACATTTCATTTCCCCTTCTCCTCTTCCAAAACTCCAATTTCCCCAAAATCATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCACCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTATTAAGAGGGAGATGAAAATTTATGTGAGGCTTTTTCATTCTTTTGCTCTTTGTATTTTTATTTAATTTTTTCTTCCCAAGTATTGGAGTTTAACGTTTATGGGTTATGTAAGTATAGAATTTGGGGATTCACAATTTGTGAATTTACAAGAGGAAAATATTCTAAATTTATCTAAGATTAATAGAGACCGGACTTTATATCTTGATTAGTTGGATGGATTTAGTAAATTATGCATGAGATAATAATGTTACATGTTTTAGTTCATAAC

Coding sequence (CDS)

ATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCACCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTATTAAGAGGGAGATGA

Protein sequence

MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR*
Homology
[Close]
BLAST of CsGy7G004090 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 104/174 (59.77%), Postives = 128/174 (73.56%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRREFLSL--TASVLAPSFVL 60
           MAS +        +  P  P    S++S  +  P    + RR+FLSL  T+++L  S   
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQF 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120
              +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SN WVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of CsGy7G004090 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-05
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 0 

Query: 69  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]
BLAST of CsGy7G004090 vs. NCBI nr
Match: XP_004136817.1 (photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_020553 [Cucumis sativus])

HSP 1 Score: 324 bits (831), Expect = 1.39e-111
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CsGy7G004090 vs. NCBI nr
Match: XP_008455335.1 (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo] >KAA0031585.1 photosystem II repair protein PSB27-H1 [Cucumis melo var. makuwa] >TYK07037.1 photosystem II repair protein PSB27-H1 [Cucumis melo var. makuwa])

HSP 1 Score: 318 bits (816), Expect = 2.70e-109
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CsGy7G004090 vs. NCBI nr
Match: XP_038887363.1 (photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida])

HSP 1 Score: 306 bits (785), Expect = 1.44e-104
Identity = 159/169 (94.08%), Postives = 165/169 (97.63%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQ+PFIPLKPKSTISAA T  TVRRR+FLSLTASVLAPS+VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTVRRRDFLSLTASVLAPSWVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALA+SDDEYVKDT+EVIGKVR TITMDRNDPNVAAAVA+LRESSNFWVAKYRKEKALLGR
Sbjct: 61  ALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CsGy7G004090 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 278 bits (711), Expect = 3.03e-93
Identity = 150/172 (87.21%), Postives = 158/172 (91.86%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRREFLSLTASVLAPSFVLFP 60
           MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRREFLSLTASVLAPS+VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKAL 120
            +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of CsGy7G004090 vs. NCBI nr
Match: KAG6572353.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011964.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277 bits (709), Expect = 6.33e-93
Identity = 149/173 (86.13%), Postives = 158/173 (91.33%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTV----RRREFLSLTASVLAPSFVLF 60
           MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRREFLSLTASVLAPS+VLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKA 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]
BLAST of CsGy7G004090 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 324 bits (831), Expect = 6.75e-112
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CsGy7G004090 vs. ExPASy TrEMBL
Match: A0A5A7SR30 (Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003550 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 1.31e-109
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CsGy7G004090 vs. ExPASy TrEMBL
Match: A0A1S3C1X2 (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 1.31e-109
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CsGy7G004090 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 278 bits (711), Expect = 1.47e-93
Identity = 150/172 (87.21%), Postives = 158/172 (91.86%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRREFLSLTASVLAPSFVLFP 60
           MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRREFLSLTASVLAPS+VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKAL 120
            +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of CsGy7G004090 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 278 bits (711), Expect = 1.47e-93
Identity = 150/172 (87.21%), Postives = 158/172 (91.86%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRREFLSLTASVLAPSFVLFP 60
           MASPTLITP TSKSQ   IPLKPKS+ISAA TT T    RRREFLSLTASVLAPS+VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKAL 120
            +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of CsGy7G004090 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 187.6 bits (475), Expect = 8.4e-48
Identity = 104/174 (59.77%), Postives = 128/174 (73.56%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPT---VRRREFLSL--TASVLAPSFVL 60
           MAS +        +  P  P    S++S  +  P    + RR+FLSL  T+++L  S   
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQF 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120
              +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SN WVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of CsGy7G004090 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 0 

Query: 69  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:
BLAST of CsGy7G004090 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LR641.2e-4659.77Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX... [more]
Q9ZVZ91.7e-0527.55Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid... [more]
BLAST of CsGy7G004090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136817.11.39e-111100.00photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN4360... [more]
XP_008455335.12.70e-10998.22PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo] ... [more]
XP_038887363.11.44e-10494.08photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida][more]
XP_022952622.13.03e-9387.21photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ... [more]
KAG6572353.16.33e-9386.13Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro... [more]
BLAST of CsGy7G004090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1S26.75e-112100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1[more]
A0A5A7SR301.31e-10998.22Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3C1X21.31e-10998.22photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN... [more]
A0A6J1HZH11.47e-9387.21photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O... [more]
A0A6J1GKW71.47e-9387.21photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata... [more]
BLAST of CsGy7G004090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03600.18.4e-4859.77photosystem II family protein [more]
AT1G05385.11.2e-0627.55photosystem II 11 kDa protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 64..169
e-value: 3.2E-39
score: 135.6
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 64..165
e-value: 1.8E-31
score: 109.3
IPR025585Photosystem II Pbs27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..169
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 43..165
score: 23.283241
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G004090.1CsGy7G004090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071484 cellular response to light intensity
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009523 photosystem II