CsGy7G001870 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G001870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	E3 ubiquitin-protein ligase RNF181-like
Location	Gy14Chr7: 1604003 .. 1604485 (+)
RNA-Seq Expression	CsGy7G001870
Synteny	CsGy7G001870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAACCTTTATCCAACAAATCATCTCTGTTTCTCCGCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTACTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTTTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGTGGCGAGGGGAGAGAGGTTGA

mRNA sequence

ATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAACCTTTATCCAACAAATCATCTCTGTTTCTCCGCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTACTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTTTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGTGGCGAGGGGAGAGAGGTTGA

Coding sequence (CDS)

ATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAACCTTTATCCAACAAATCATCTCTGTTTCTCCGCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTACTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTTTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGTGGCGAGGGGAGAGAGGTTGA

Protein sequence

MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGWRGERG*

Homology

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BLAST of CsGy7G001870 vs. NCBI nr
Match: XP_004144954.1 (uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_020356 [Cucumis sativus])

HSP 1 Score: 306 bits (784), Expect = 1.17e-103
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
           MSFAISNPIQYRLYASGTGGNGVLQVNI+FIQQIISVSPLTGRPHEVLHQTPRIPYHNAL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
           FYLSLRQLQSPL+YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF
Sbjct: 61  FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120

Query: 121 IRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
           IRLIWLPSMGGGGAGAEETV+LDEAPPAVKRGVG  RGER
Sbjct: 121 IRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 160

[Close]

BLAST of CsGy7G001870 vs. NCBI nr
Match: XP_011659694.1 (E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_020163 [Cucumis sativus])

HSP 1 Score: 306 bits (784), Expect = 1.17e-103
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
           MSFAISNPIQYRLYASGTGGNGVLQVNI+FIQQIISVSPLTGRPHEVLHQTPRIPYHNAL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
           FYLSLRQLQSPL+YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF
Sbjct: 61  FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120

Query: 121 IRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
           IRLIWLPSMGGGGAGAEETV+LDEAPPAVKRGVG  RGER
Sbjct: 121 IRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 160

[Close]

BLAST of CsGy7G001870 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (648), Expect = 5.87e-83
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
           MSFAISNPIQYRLY SGTGGNG+L+V I+F +Q+IS+SP+TGRPH++LHQTPRIPYHNAL
Sbjct: 1   MSFAISNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNAL 60

Query: 61  FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
            YL+LRQLQSPL+YITQ LSSLNIRPAASQ+MAR+IASHILQMPDRN + NFHI+AEVDF
Sbjct: 61  VYLTLRQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDF 120

Query: 121 IRLIWLP-SMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
           IR+IWL       GAGAEETV+ DEAPPA+KRGVG  RGER
Sbjct: 121 IRVIWLELEEQSMGAGAEETVVFDEAPPALKRGVGKARGER 161

[Close]

BLAST of CsGy7G001870 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 189 bits (481), Expect = 1.23e-57
Identity = 99/156 (63.46%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTG-GNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNA 60
           MS A S PIQYRLY +G+G GNGVL+V  ++ +++ISVSP+TGRP  +LH+TPRIP+HNA
Sbjct: 1   MSSAASTPIQYRLYGTGSGTGNGVLEVQTSYFERMISVSPVTGRPPRILHETPRIPFHNA 60

Query: 61  LFYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 120
           LFYLSL QLQ+PL+YI+Q LSSLNI PAA + MAR+IAS+I +M + N E+NF I+AEVD
Sbjct: 61  LFYLSLHQLQNPLFYISQFLSSLNICPAACEIMARQIASYIDRMINENRESNFRIIAEVD 120

Query: 121 FIRLIWLP--SMGGGGAGAEETVLLDEAPPAVKRGV 153
           F R+IW+   S+ GG A AEETV+ DEAPP  +RGV
Sbjct: 121 FSRVIWMEEHSIYGGDAMAEETVVFDEAPPP-RRGV 155

[Close]

BLAST of CsGy7G001870 vs. NCBI nr
Match: KAG6603237.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125 bits (314), Expect = 2.20e-32
Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 0


Query: 1   MSFAISNPIQYRLY--ASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHN 60
           MSFA S PIQYRLY  A+ +  +  L+V +    ++IS S  TG P ++L +T   P ++
Sbjct: 1   MSFAASTPIQYRLYTAAAQSETHKALEVRMRSFNRLISASSFTGVPPQILFETRPTPVND 60

Query: 61  ALFYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEV 120
           ALF+LSLRQL  PL++I ++LS+L+I  AA + +  +IAS I Q+   N ET+FHI+ EV
Sbjct: 61  ALFHLSLRQLHDPLFHIPRLLSTLDIHAAACEVIGWKIASQITQLSAGNRETSFHIVVEV 120

Query: 121 DFIRLIWLPSMGG-------GGAGAEETVLLDEAPPA--VKRGVGWRGE 158
           DFI+ IW+  + G       GG   EET++LDE P     +RGV  R E
Sbjct: 121 DFIQNIWMGQVAGMHQGQGNGGGLVEETLVLDELPARRRQRRGVVARVE 169

[Close]

BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 306 bits (784), Expect = 5.66e-104
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
           MSFAISNPIQYRLYASGTGGNGVLQVNI+FIQQIISVSPLTGRPHEVLHQTPRIPYHNAL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
           FYLSLRQLQSPL+YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF
Sbjct: 61  FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120

Query: 121 IRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
           IRLIWLPSMGGGGAGAEETV+LDEAPPAVKRGVG  RGER
Sbjct: 121 IRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 160

[Close]

BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 306 bits (784), Expect = 5.66e-104
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
           MSFAISNPIQYRLYASGTGGNGVLQVNI+FIQQIISVSPLTGRPHEVLHQTPRIPYHNAL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
           FYLSLRQLQSPL+YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF
Sbjct: 61  FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120

Query: 121 IRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
           IRLIWLPSMGGGGAGAEETV+LDEAPPAVKRGVG  RGER
Sbjct: 121 IRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 160

[Close]

BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 2.84e-83
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
           MSFAISNPIQYRLY SGTGGNG+L+V I+F +Q+IS+SP+TGRPH++LHQTPRIPYHNAL
Sbjct: 1   MSFAISNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNAL 60

Query: 61  FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
            YL+LRQLQSPL+YITQ LSSLNIRPAASQ+MAR+IASHILQMPDRN + NFHI+AEVDF
Sbjct: 61  VYLTLRQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDF 120

Query: 121 IRLIWLP-SMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
           IR+IWL       GAGAEETV+ DEAPPA+KRGVG  RGER
Sbjct: 121 IRVIWLELEEQSMGAGAEETVVFDEAPPALKRGVGKARGER 161

[Close]

BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 2.84e-83
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
           MSFAISNPIQYRLY SGTGGNG+L+V I+F +Q+IS+SP+TGRPH++LHQTPRIPYHNAL
Sbjct: 1   MSFAISNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNAL 60

Query: 61  FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
            YL+LRQLQSPL+YITQ LSSLNIRPAASQ+MAR+IASHILQMPDRN + NFHI+AEVDF
Sbjct: 61  VYLTLRQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDF 120

Query: 121 IRLIWLP-SMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
           IR+IWL       GAGAEETV+ DEAPPA+KRGVG  RGER
Sbjct: 121 IRVIWLELEEQSMGAGAEETVVFDEAPPALKRGVGKARGER 161

[Close]

BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match: A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 1.37e-31
Identity = 76/161 (47.20%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 1   MSFAISNPIQYRLYASGTG-GNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNA 60
           MSFAIS+PIQY L  +GTG GNGVL++ +++++++IS+S ++ R   +L++T  IP++NA
Sbjct: 1   MSFAISSPIQYLL--NGTGFGNGVLEIQLSYVERVISISSVSQR---ILYETQPIPFNNA 60

Query: 61  LFYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAE 120
            FYLS+  LQ PL+YI Q L SLNIR    +N+AR+IAS++  M + N+   +NF+++A 
Sbjct: 61  HFYLSVHHLQDPLFYIRQFLFSLNIR---RENIARQIASYVAHMCNGNTGRNSNFYVIAR 120

Query: 121 VDFIRLIWLP--SM---GGGGAGAEETVLLDEAPPAVKRGV 153
           VD +R I +   SM   GGG     ETV+ DE P A +RGV
Sbjct: 121 VDLVRAIRIEEESMWRDGGGVVVEAETVVFDEVPRA-RRGV 152

The following BLAST results are available for this feature:

BLAST of CsGy7G001870 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G001870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144954.1	1.17e-103	96.88	uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical ...	[more]
XP_011659694.1	1.17e-103	96.88	E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical pro...	[more]
XP_016899530.1	5.87e-83	78.26	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 ...	[more]
XP_038883574.1	1.23e-57	63.46	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]
KAG6603237.1	2.20e-32	44.38	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]

BLAST of CsGy7G001870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K696	5.66e-104	96.88	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 P...	[more]
A0A0A0K2W2	5.66e-104	96.88	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 P...	[more]
A0A5D3E1S5	2.84e-83	78.26	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DUZ4	2.84e-83	78.26	E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ...	[more]
A0A5A7TLM1	1.37e-31	47.20	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of CsGy7G001870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G001870.2	CsGy7G001870.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity