Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAACCTTTATCCAACAAATCATCTCTGTTTCTCCGCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTACTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTTTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGTGGCGAGGGGAGAGAGGTTGA
mRNA sequence
ATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAACCTTTATCCAACAAATCATCTCTGTTTCTCCGCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTACTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTTTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGTGGCGAGGGGAGAGAGGTTGA
Coding sequence (CDS)
ATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAACCTTTATCCAACAAATCATCTCTGTTTCTCCGCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTACTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTTTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGTGGCGAGGGGAGAGAGGTTGA
Protein sequence
MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGWRGERG*
Homology
BLAST of CsGy7G001870 vs. NCBI nr
Match:
XP_004144954.1 (uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_020356 [Cucumis sativus])
HSP 1 Score: 306 bits (784), Expect = 1.17e-103
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
MSFAISNPIQYRLYASGTGGNGVLQVNI+FIQQIISVSPLTGRPHEVLHQTPRIPYHNAL
Sbjct: 1 MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
Query: 61 FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
FYLSLRQLQSPL+YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF
Sbjct: 61 FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
Query: 121 IRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
IRLIWLPSMGGGGAGAEETV+LDEAPPAVKRGVG RGER
Sbjct: 121 IRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 160
BLAST of CsGy7G001870 vs. NCBI nr
Match:
XP_011659694.1 (E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_020163 [Cucumis sativus])
HSP 1 Score: 306 bits (784), Expect = 1.17e-103
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
MSFAISNPIQYRLYASGTGGNGVLQVNI+FIQQIISVSPLTGRPHEVLHQTPRIPYHNAL
Sbjct: 1 MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
Query: 61 FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
FYLSLRQLQSPL+YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF
Sbjct: 61 FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
Query: 121 IRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
IRLIWLPSMGGGGAGAEETV+LDEAPPAVKRGVG RGER
Sbjct: 121 IRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 160
BLAST of CsGy7G001870 vs. NCBI nr
Match:
XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 254 bits (648), Expect = 5.87e-83
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
MSFAISNPIQYRLY SGTGGNG+L+V I+F +Q+IS+SP+TGRPH++LHQTPRIPYHNAL
Sbjct: 1 MSFAISNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNAL 60
Query: 61 FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
YL+LRQLQSPL+YITQ LSSLNIRPAASQ+MAR+IASHILQMPDRN + NFHI+AEVDF
Sbjct: 61 VYLTLRQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDF 120
Query: 121 IRLIWLP-SMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
IR+IWL GAGAEETV+ DEAPPA+KRGVG RGER
Sbjct: 121 IRVIWLELEEQSMGAGAEETVVFDEAPPALKRGVGKARGER 161
BLAST of CsGy7G001870 vs. NCBI nr
Match:
XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])
HSP 1 Score: 189 bits (481), Expect = 1.23e-57
Identity = 99/156 (63.46%), Postives = 126/156 (80.77%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTG-GNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNA 60
MS A S PIQYRLY +G+G GNGVL+V ++ +++ISVSP+TGRP +LH+TPRIP+HNA
Sbjct: 1 MSSAASTPIQYRLYGTGSGTGNGVLEVQTSYFERMISVSPVTGRPPRILHETPRIPFHNA 60
Query: 61 LFYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 120
LFYLSL QLQ+PL+YI+Q LSSLNI PAA + MAR+IAS+I +M + N E+NF I+AEVD
Sbjct: 61 LFYLSLHQLQNPLFYISQFLSSLNICPAACEIMARQIASYIDRMINENRESNFRIIAEVD 120
Query: 121 FIRLIWLP--SMGGGGAGAEETVLLDEAPPAVKRGV 153
F R+IW+ S+ GG A AEETV+ DEAPP +RGV
Sbjct: 121 FSRVIWMEEHSIYGGDAMAEETVVFDEAPPP-RRGV 155
BLAST of CsGy7G001870 vs. NCBI nr
Match:
KAG6603237.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 125 bits (314), Expect = 2.20e-32
Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 0
Query: 1 MSFAISNPIQYRLY--ASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHN 60
MSFA S PIQYRLY A+ + + L+V + ++IS S TG P ++L +T P ++
Sbjct: 1 MSFAASTPIQYRLYTAAAQSETHKALEVRMRSFNRLISASSFTGVPPQILFETRPTPVND 60
Query: 61 ALFYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEV 120
ALF+LSLRQL PL++I ++LS+L+I AA + + +IAS I Q+ N ET+FHI+ EV
Sbjct: 61 ALFHLSLRQLHDPLFHIPRLLSTLDIHAAACEVIGWKIASQITQLSAGNRETSFHIVVEV 120
Query: 121 DFIRLIWLPSMGG-------GGAGAEETVLLDEAPPA--VKRGVGWRGE 158
DFI+ IW+ + G GG EET++LDE P +RGV R E
Sbjct: 121 DFIQNIWMGQVAGMHQGQGNGGGLVEETLVLDELPARRRQRRGVVARVE 169
BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match:
A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1)
HSP 1 Score: 306 bits (784), Expect = 5.66e-104
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
MSFAISNPIQYRLYASGTGGNGVLQVNI+FIQQIISVSPLTGRPHEVLHQTPRIPYHNAL
Sbjct: 1 MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
Query: 61 FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
FYLSLRQLQSPL+YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF
Sbjct: 61 FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
Query: 121 IRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
IRLIWLPSMGGGGAGAEETV+LDEAPPAVKRGVG RGER
Sbjct: 121 IRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 160
BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match:
A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1)
HSP 1 Score: 306 bits (784), Expect = 5.66e-104
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
MSFAISNPIQYRLYASGTGGNGVLQVNI+FIQQIISVSPLTGRPHEVLHQTPRIPYHNAL
Sbjct: 1 MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
Query: 61 FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
FYLSLRQLQSPL+YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF
Sbjct: 61 FYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
Query: 121 IRLIWLPSMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
IRLIWLPSMGGGGAGAEETV+LDEAPPAVKRGVG RGER
Sbjct: 121 IRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 160
BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match:
A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)
HSP 1 Score: 254 bits (648), Expect = 2.84e-83
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
MSFAISNPIQYRLY SGTGGNG+L+V I+F +Q+IS+SP+TGRPH++LHQTPRIPYHNAL
Sbjct: 1 MSFAISNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNAL 60
Query: 61 FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
YL+LRQLQSPL+YITQ LSSLNIRPAASQ+MAR+IASHILQMPDRN + NFHI+AEVDF
Sbjct: 61 VYLTLRQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDF 120
Query: 121 IRLIWLP-SMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
IR+IWL GAGAEETV+ DEAPPA+KRGVG RGER
Sbjct: 121 IRVIWLELEEQSMGAGAEETVVFDEAPPALKRGVGKARGER 161
BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match:
A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)
HSP 1 Score: 254 bits (648), Expect = 2.84e-83
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTGGNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60
MSFAISNPIQYRLY SGTGGNG+L+V I+F +Q+IS+SP+TGRPH++LHQTPRIPYHNAL
Sbjct: 1 MSFAISNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNAL 60
Query: 61 FYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDF 120
YL+LRQLQSPL+YITQ LSSLNIRPAASQ+MAR+IASHILQMPDRN + NFHI+AEVDF
Sbjct: 61 VYLTLRQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDF 120
Query: 121 IRLIWLP-SMGGGGAGAEETVLLDEAPPAVKRGVGW-RGER 159
IR+IWL GAGAEETV+ DEAPPA+KRGVG RGER
Sbjct: 121 IRVIWLELEEQSMGAGAEETVVFDEAPPALKRGVGKARGER 161
BLAST of CsGy7G001870 vs. ExPASy TrEMBL
Match:
A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1)
HSP 1 Score: 122 bits (306), Expect = 1.37e-31
Identity = 76/161 (47.20%), Postives = 112/161 (69.57%), Query Frame = 0
Query: 1 MSFAISNPIQYRLYASGTG-GNGVLQVNITFIQQIISVSPLTGRPHEVLHQTPRIPYHNA 60
MSFAIS+PIQY L +GTG GNGVL++ +++++++IS+S ++ R +L++T IP++NA
Sbjct: 1 MSFAISSPIQYLL--NGTGFGNGVLEIQLSYVERVISISSVSQR---ILYETQPIPFNNA 60
Query: 61 LFYLSLRQLQSPLYYITQILSSLNIRPAASQNMARRIASHILQMPDRNS--ETNFHILAE 120
FYLS+ LQ PL+YI Q L SLNIR +N+AR+IAS++ M + N+ +NF+++A
Sbjct: 61 HFYLSVHHLQDPLFYIRQFLFSLNIR---RENIARQIASYVAHMCNGNTGRNSNFYVIAR 120
Query: 121 VDFIRLIWLP--SM---GGGGAGAEETVLLDEAPPAVKRGV 153
VD +R I + SM GGG ETV+ DE P A +RGV
Sbjct: 121 VDLVRAIRIEEESMWRDGGGVVVEAETVVFDEVPRA-RRGV 152
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_004144954.1 | 1.17e-103 | 96.88 | uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical ... | [more] |
| XP_011659694.1 | 1.17e-103 | 96.88 | E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical pro... | [more] |
| XP_016899530.1 | 5.87e-83 | 78.26 | PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 ... | [more] |
| XP_038883574.1 | 1.23e-57 | 63.46 | E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida] | [more] |
| KAG6603237.1 | 2.20e-32 | 44.38 | E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K696 | 5.66e-104 | 96.88 | RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 P... | [more] |
| A0A0A0K2W2 | 5.66e-104 | 96.88 | RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 P... | [more] |
| A0A5D3E1S5 | 2.84e-83 | 78.26 | E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A1S4DUZ4 | 2.84e-83 | 78.26 | E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ... | [more] |
| A0A5A7TLM1 | 1.37e-31 | 47.20 | E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
