CsGy7G000080 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G000080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein RADIALIS-like 3
Location	Gy14Chr7: 85369 .. 87519 (+)
RNA-Seq Expression	CsGy7G000080
Synteny	CsGy7G000080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATATATAAATCTCTCTCATTTTTCTCCTTTACATCTCCCCAAGAAGAAAAAAAATTCCATTTCTTTCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCAGAGACGACATGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTAGGCGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGACCTCCGGCGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGACGCACTAGCAATCGAGATGAAGAGTTGAGGTTAGTGAACTCAAAAGATGATATTCTTTTCTTCTTTTCTGTTTTGATTATTGGATGGTGATTCAAAATATATATGTCGTTTAACAAATATTATTGAATACATGTGAAACATATCTATATCTTAACCATAGTTTTTAATATTTCAAACTATTGAAGCTGAAGATAGGTATCATAATTTGATTTTTTGGGCACTAGTTCCTTTCTATCATGTCGAATATTCTTTGGTTGGTTTTTGAGATTTTTGTATTTTGGTACCAGGCTTAGGTGAGTTTTATGTGCTTGGTTTTGTAGTTTTGTGATTAGGGTTTAGATTTTCTTTATATGGTAGGTGAATATTTTTGAGACTGAGAATAATATTTTGTTGGTTGAATTTATTGAAATTTATTGGTTAGTTTGGTGGCCACGTTCTTTCAAGTATATAATTAATTTTGAGTTGGTATAAATTATTTAAGTTTAACCTTTTAAATATATAGAAATTAGAAATGTGTGTTTGGAATAAAATTTGAAGTATTTAATTTTCAAAATAAGTTCTTTAGAAGAAAACTACCTTTAGTAATCATTCAAAATAGTTTTGGAGTGTTTTTTAAACAATTTTTACCAAAAGAACTTAAATAAAAAAGTTTAAATTGACTTAAAAAACTAGAGCCTAAAATTTTGGTAAAATTGATTCAAGAATAATTTTAAAATTAACACAATTACTCATATTTTTCTATATTTTTCAATCCAACCAACAAAATTAAACATTAAACAAACAAGAGTTCAACAATTTTGTTCTTCTTTTTTCTTTCTTTTGAAAATGTATTCACAAACAAGAGATGAGGAGATGATCGATACAATGCAACATCCTATCGAGATTGGCACACTCCTAACATTCAACATAATTAAGCTTATGGTTGGTTAATTATCTTTAACCAACAAAAGTTGAAAAATATATATAACCCCAAAAAAATGCATAAACTAATGGGAAAACTCCAACCAAAAAGGAAAAACATTTAATTATCATAGAAAAATGTTAGAGCACTAAATAAATTAATGATAAAATATAATCTACTTTCAATTCTAGAATTACAAAAGAAATAATAACAACAATAATAATAATTTTCTTGGTGTCTCTAAAATCACAACTAAACACAAAAGTTGATAATCAAGAAAAATTTAATTACATTAACTCTATATAACACTAAATTAACACAAAACTCAAACAGGTAAAGATATGACATTATTATAACAAAAGTAAGCTTAATTCAAGAGTTATCATCCTGATCTCTTCCATCTTAAAAGATTAAAAGTTGCATTTCTCATCCCAGATCTCTTCCATCTTAAAAGATTAAAAGCTGCATTTCTCATCCCATAATTATTGTATTAAAATAAAAGATATGATGACACTATAAAGATTTAAAACAGAAGAGCATCAGTTGGAACACATGCAAGATCTCCAACTTTGATTCAATGATTTAACTGTGACTTGCTTTAAGCTCTTTTCCCCATTCCTTTAAGTTGTAGGACTAATTTGAAGAAAACACATTATATCTTAAATAGGACAGTGAAAGAAAAATCAACAGAATAAGCTAAAAGTTTTTTATGTTGAGATGCGTTCATCACTTTGCCTTTGATTTTTGTTTTGCTAGGCTGTTGAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCGCTGCCACTATTCTCTTTCAATATCTCATCAAACACAAATGGCTCACTTGGCCTAGGTGGATTCATAAATATTCTACTGTACAAGTTTTATATCTTTTAAATCAACTCTCTCTCAACAAATTAAAAGTGTACAACCAACCATCTCC

mRNA sequence

TTCATATATAAATCTCTCTCATTTTTCTCCTTTACATCTCCCCAAGAAGAAAAAAAATTCCATTTCTTTCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCAGAGACGACATGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTAGGCGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGACCTCCGGCGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGACGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTGAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCGCTGCCACTATTCTCTTTCAATATCTCATCAAACACAAATGGCTCACTTGGCCTAGGTGGATTCATAAATATTCTACTGTACAAGTTTTATATCTTTTAAATCAACTCTCTCTCAACAAATTAAAAGTGTACAACCAACCATCTCC

Coding sequence (CDS)

ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCAGAGACGACATGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTAGGCGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGACCTCCGGCGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGACGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTGAAGTATCTGAAGCTTCAATGA

Protein sequence

MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ*

Homology

[Close]

BLAST of CsGy7G000080 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNYRR----TSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+     + +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CsGy7G000080 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-23
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S+       +WT K+NKLFE+ALA YD+DTP+RW N+A AVGGKSA+EV+RHYE+L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSN 83
          + D+  IESGR P PNYR   N
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of CsGy7G000080 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-23
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR-----RTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of CsGy7G000080 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPNYRR----TSNR-DEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR     T+ R  +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CsGy7G000080 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.9e-21
Identity = 45/83 (54.22%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 15 WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPI 74
          W+ K+NK FE+ALA+YDKDTP+RW N+A AV G++ +EV++HYEIL+ED++ IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYRRT-SNRDEELRLLKYLKLQ 97
          PNYR T  N   + +  + LK++
Sbjct: 71 PNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of CsGy7G000080 vs. NCBI nr
Match: XP_004151090.1 (protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 191 bits (486), Expect = 2.55e-61
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96
          LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CsGy7G000080 vs. NCBI nr
Match: XP_008447023.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 187 bits (475), Expect = 1.21e-59
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CsGy7G000080 vs. NCBI nr
Match: KAA0055424.1 (protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK22307.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 7.15e-55
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYL 93
          LEDLR+IESGRVPIPNYR TSNRDEELRL+K +
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLVKMM 93

[Close]

BLAST of CsGy7G000080 vs. NCBI nr
Match: KGN43156.2 (hypothetical protein Csa_020475 [Cucumis sativus])

HSP 1 Score: 177 bits (448), Expect = 4.82e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELR 88
          LEDLRRIESGRVPIPNYRRTSNRDEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELR 88

[Close]

BLAST of CsGy7G000080 vs. NCBI nr
Match: XP_038888995.1 (protein RADIALIS-like 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 172 bits (436), Expect = 1.08e-53
Identity = 86/96 (89.58%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERW NIA AVGGKS DEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96
          LEDLRRIESGRVPIPNYR   NRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 96

[Close]

BLAST of CsGy7G000080 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 191 bits (486), Expect = 1.23e-61
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96
          LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CsGy7G000080 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 5.88e-60
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of CsGy7G000080 vs. ExPASy TrEMBL
Match: A0A5D3DF44 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00100 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 3.46e-55
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYL 93
          LEDLR+IESGRVPIPNYR TSNRDEELRL+K +
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLVKMM 93

[Close]

BLAST of CsGy7G000080 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 5.04e-52
Identity = 85/96 (88.54%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96
          LEDL RIESGRVPIPNYR   N DEELRLLKYLKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of CsGy7G000080 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 1.45e-51
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+ PERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96
          LEDL+RIESGRVPIPNYR   N DEELRLLKYLKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of CsGy7G000080 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-25
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNYRR----TSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+     + +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CsGy7G000080 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-24
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR-----RTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of CsGy7G000080 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-23
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR------RTSNRDEELRLLKYL 94
          +EDL  IE+GRVP+PNY+      R+ N  +   + KYL
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRYITKYL 96

[Close]

BLAST of CsGy7G000080 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPNYRR----TSNR-DEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR     T+ R  +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CsGy7G000080 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSS+      ++WT +++K FE ALA +DKDTP+RWQ IA AVGGKS +EV+RHYE+L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYRRTS 82
          L D+  IESGR P P YR T+
Sbjct: 61 LRDVNDIESGRYPQPRYRNTN 77

The following BLAST results are available for this feature:

BLAST of CsGy7G000080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	1.0e-23	54.37	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q6NNN0	5.2e-23	60.98	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	5.2e-23	55.00	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
F4JVB8	2.0e-22	52.48	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	4.9e-21	54.22	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of CsGy7G000080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151090.1	2.55e-61	100.00	protein RADIALIS-like 3 [Cucumis sativus]	[more]
XP_008447023.1	1.21e-59	97.92	PREDICTED: protein RADIALIS-like 3 [Cucumis melo]	[more]
KAA0055424.1	7.15e-55	93.55	protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK22307.1 protein RADIALIS-...	[more]
KGN43156.2	4.82e-54	100.00	hypothetical protein Csa_020475 [Cucumis sativus]	[more]
XP_038888995.1	1.08e-53	89.58	protein RADIALIS-like 3 isoform X1 [Benincasa hispida]	[more]

BLAST of CsGy7G000080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2A2	1.23e-61	100.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S...	[more]
A0A1S3BHB0	5.88e-60	97.92	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1	[more]
A0A5D3DF44	3.46e-55	93.55	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1GKW1	5.04e-52	88.54	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]
A0A6J1ICR6	1.45e-51	87.50	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]

BLAST of CsGy7G000080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	7.5e-25	54.37	RAD-like 5	[more]
AT1G75250.2	3.7e-24	55.00	RAD-like 6	[more]
AT1G75250.1	1.1e-23	54.55	RAD-like 6	[more]
AT4G39250.1	1.4e-23	52.48	RAD-like 1	[more]
AT2G18328.1	1.3e-21	59.26	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 e-value: 2.1E-7 score: 40.6
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..61 score: 6.365003
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 14..61 e-value: 8.2391E-6 score: 37.555
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..57 e-value: 7.9E-6 score: 26.0
None	No IPR available	GENE3D	1.10.10.60		coord: 7..74 e-value: 1.3E-23 score: 84.6
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..80
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 13..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G000080.1	CsGy7G000080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding