CsGy6G035893 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G035893
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 31570931 .. 31572503 (+)
RNA-Seq Expression	CsGy6G035893
Synteny	CsGy6G035893

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACTTTGTGACTGATAATGTAATTTTGTTTGCATAGAGGTATACCACTGACATGGGAGACGAGCAGAAAGGTAACAACTAATAACCAATAGTTCTATTTGCTCTTGTGAACTGAAATCATGTTCAAACATCTGCCAAAGAAACTATCAGTGGTGGACCTTCCTACATCAGGGAAGATGCCCATGATGTATGAACTCAAGGATTTTCTGTTGTAATCCAGTTTAGCGCTAACTAGAGGGCTTAAACCATTAAATTTGGAATTAGAGGGAAAGACAGAGAGCATCTCCAAAGTTATATTCAATCACTTCTTTACAACTTTGTACTCCAGCTCCAAACTTTAAATATATGTGAGGCACTGGGCTGCCTTGATATGAACCAAAATCGTGGGCCCACGCTCCAGTGATCATACTGTCTGATTACATTAGAAAGGGTAAGCTCCTCACCCGTTACCAATAATCCCATGGCCCCCAACCAACATTCAGGATCTTTCAAAAGAGCATTCTAGTACCCAACCTAGCACTTAGAGCTAGGAACAAGTCATTGGAAAAGAAGTACTACAGCAGGTAACATTTAAGCTACGTAAAGCCGTACTTATAACAGTCGATGTCGCAACAGCATGTAGTCATAGCATTAATGATTTTTTCCCCCTTTTTGATTTGAATTACCAAAAACAATTGAATCAAAAGACAAAGTTGATCCTATTGGACCAACCACTTCATTCAAGAGAGATGTGGGCAGTAGGTGACAGGGACCCAGAAAAGAGCCAACAAAAATGGAACAGCAAAAGATCTTCTTTCCAGCCTGTAGGAGAAACAGCACAAGATTCAAACTGCAAACTTTGTGGCAAAGTTTATCATAAAACAAAAGAAACAAATAATTTTACCCTGAGTACATTCCGACCCAAACCCTATCACAAGCAGCTACAACAAGAATATGAGGACTGAGTACCCCATATCATCTATTATCCTGCCAGCTTTTAGCAAATGGATTTTGTACATGCAATTCTCATCTGCATAGACACCTATTTTATTTTAGACATTGAGACCTTGAGGAGAGATAGAAACTTATGTCATCGGTTTGTGAATCTTAAATTTTATAAAAGAATAGAATACCACCCTTTTTGTGTTCCTAATACTCAACCCCAGAAGCAAAAGGAAAAAGAAATATAAGGTACGACAACTATTACACTAACTTGATACTGAAATCCATAAAGCAGCCGGTATCTTCATTTCATACTTTGTTTCTTCATTTGTTATTTAGTCATACGTGTGTTAGGATAAATTGGATCGGATCAGCTCTTGATAAATTCCACAGTGCTACTAGCTAGCTCTGCAGTAGAGCTTGGTAAAATCCTATAGGATATTCCAGGGAATAACTACAAATATTTTCAAAACTAAAGAATATATGTGTGTGCAACTATTCTACGGTGATTATAACAGCTGGCATCCGCAACCAAAATTACAAAAGAAATACATGATGGATCCAACAACTCTGAATATTCATCTGTGATAGCACAATGCAAAACAGGATATCAGAAAGAACCCACAAAGCAAGTGATAAGAATCTGA

mRNA sequence

ATGGAGAACTTTGTGACTGATAATGTAACATTTAAGCTACGTAAAGCCGTACTTATAACAGTCGATGTCGCAACAGCATGTAGTCATAGCATTAATGATTTTTTCCCCCTTTTTGATTTGAATTACCAAAAACAATTGAATCAAAAGACAAAGTTGATCCTATTGGACCAACCACTTCATTCAAGAGAGATGTGGGCAGTAGGTGACAGGGACCCAGAAAAGAGCCAACAAAAATGGAACAGCAAAAGATCTTCTTTCCAGCCTGTAGGAGAAACAGCACAAGATTCAAACTGCAAACTTTGTGGCAAAAATACCACCCTTTTTGTGTTCCTAATACTCAACCCCAGAAGCAAAAGGAAAAAGAAATATAAGCTGGCATCCGCAACCAAAATTACAAAAGAAATACATGATGGATCCAACAACTCTGAATATTCATCTGTGATAGCACAATGCAAAACAGGATATCAGAAAGAACCCACAAAGCAAGTGATAAGAATCTGA

Coding sequence (CDS)

ATGGAGAACTTTGTGACTGATAATGTAACATTTAAGCTACGTAAAGCCGTACTTATAACAGTCGATGTCGCAACAGCATGTAGTCATAGCATTAATGATTTTTTCCCCCTTTTTGATTTGAATTACCAAAAACAATTGAATCAAAAGACAAAGTTGATCCTATTGGACCAACCACTTCATTCAAGAGAGATGTGGGCAGTAGGTGACAGGGACCCAGAAAAGAGCCAACAAAAATGGAACAGCAAAAGATCTTCTTTCCAGCCTGTAGGAGAAACAGCACAAGATTCAAACTGCAAACTTTGTGGCAAAAATACCACCCTTTTTGTGTTCCTAATACTCAACCCCAGAAGCAAAAGGAAAAAGAAATATAAGCTGGCATCCGCAACCAAAATTACAAAAGAAATACATGATGGATCCAACAACTCTGAATATTCATCTGTGATAGCACAATGCAAAACAGGATATCAGAAAGAACCCACAAAGCAAGTGATAAGAATCTGA

Protein sequence

MENFVTDNVTFKLRKAVLITVDVATACSHSINDFFPLFDLNYQKQLNQKTKLILLDQPLHSREMWAVGDRDPEKSQQKWNSKRSSFQPVGETAQDSNCKLCGKNTTLFVFLILNPRSKRKKKYKLASATKITKEIHDGSNNSEYSSVIAQCKTGYQKEPTKQVIRI*

Homology

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BLAST of CsGy6G035893 vs. NCBI nr
Match: KAE8647753.1 (hypothetical protein Csa_004390, partial [Cucumis sativus])

HSP 1 Score: 312 bits (800), Expect = 4.49e-107
Identity = 156/158 (98.73%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 9   VTFKLRKAVLITVDVATACSHSINDFFPLFDLNYQKQLNQKTKLILLDQPLHSREMWAVG 68
           VTFKLRKAVLITVDVATACSHSINDFFPLF LNYQKQLNQKTKLILLDQPLHSREMWAVG
Sbjct: 1   VTFKLRKAVLITVDVATACSHSINDFFPLFYLNYQKQLNQKTKLILLDQPLHSREMWAVG 60

Query: 69  DRDPEKSQQKWNSKRSSFQPVGETAQDSNCKLCGKNTTLFVFLILNPRSKRKKKYKLASA 128
           DRDPEKSQQKWNSKRS FQPVGETAQDSNCKLCGKNTTLFVFLILNPRSKRKKKYKLASA
Sbjct: 61  DRDPEKSQQKWNSKRSFFQPVGETAQDSNCKLCGKNTTLFVFLILNPRSKRKKKYKLASA 120

Query: 129 TKITKEIHDGSNNSEYSSVIAQCKTGYQKEPTKQVIRI 166
           TKITKEIHDGSNNSEYSSVIAQCKTGYQKEPTKQVIRI
Sbjct: 121 TKITKEIHDGSNNSEYSSVIAQCKTGYQKEPTKQVIRI 158

The following BLAST results are available for this feature:

BLAST of CsGy6G035893 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G035893 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647753.1	4.49e-107	98.73	hypothetical protein Csa_004390, partial [Cucumis sativus]	[more]

BLAST of CsGy6G035893 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy6G035893 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G035893.1	CsGy6G035893.1	mRNA