CsGy6G035590 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G035590
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L18a
Location	Gy14Chr6: 31343148 .. 31345007 (-)
RNA-Seq Expression	CsGy6G035590
Synteny	CsGy6G035590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAACTTTAGGGTTTGGGCCAATTGCATAAAAAAGTTGGCATGTATATAAAGAAGAGGCGAACTAGGGTTTTCGTTCTGTCTTAGCCGCAGAAACCCTCCATCTCCGAGAAAGCACCACACGGAGCATCCATGGTTACTTTCAGGGTAAAGCTTCCTTTTCTGAATCTCAACTCTCCCAGTCATAACGTTTGCAACATAAGTGAATGGAACTGAGTCTAATTCCTCTATCATTCTCTTCGTCTGTGTGTTTTCAATGTACGGAGCCATGGCACTGATTGTGTAATTTTCTGATGATGCGTTTTTTTTTTTTTTTTTTTTTTTTGCAGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTGAGTTTTATTTTCTGTCTGCCGTCATTTTCCTTGTGGCATTGCTTGAATAGTGTTATTATGTTCTCTGGCTAATCGATTAATAAACTAGAGATTCGATTAGTTTATTGAAAGTGTTAGCTGAACCCTAGTTGCTCTGTTTTTCCTTTTGCTGATTTGTTTTAGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGGTAAAGTGATTTTGTCTCATACCCCTTCTCATACACCTCAATCTTCCACTTAGAATGACCTAAAATTGTTATGCCGGATATTTGTCTGATCATCGATGTAGGTGACCTTATGTTGGCTCACATAGTAAATGCACGATCACATTGTATGAAAAAGATATCAGGCGTTGAGCTGAACTTGATATTTTTTGAATAACTTGTTACTGTGATTAACTTCATGTTGATTAGCATTTCATTCAATATGCAATCTCCCTATACCATTAATGCACCCCAATTCTTGATGAAATAAACCGTGGCATGACTAGTGGCTTTGGCTTCTAAGTTGTGTTTGGTACTATTTGATTATTATTTGAATCTGTTTTCTGGATTGGGTTGCTAAGTCCTAACATATGCATTAAATCATTAGCTTTACTTTTCCATTTGGGTTGTTCTCATGGAATTGTCATCGTCTTTAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAATTTGGTTGTTTAAGGAATGAGAAAAAGTGACCCGAGTTGTCTTATTTTGAAATGTTCGGTAGAGACCTTCGTATCAGCGGTTCTTCAATGTTTATTTTGTTTTTACTATATGTGGGATCAGACTTTAAATTTTTGGGTTTATTGCCATGTCTTTTGGTTTTTTATGGAAGTATATCGCCTTATGAAGTCTTAATATGGATATCCATATGGTTTTTTAGTGGCTATCTGGTGATAGAAATAGTACGACCAATACTGGATTCTTGAAATGTTGGGAACTATGGTAGTTTTATTTAATACGTGGGTTTTTCTTTTTCATTATAAGTTCAGGTTTCAAGGAGGATACATTTTATAAACATTGTTCTCTTTAACTATGGAGACTCCTTTTGTGATGCT

mRNA sequence

ATTAACTTTAGGGTTTGGGCCAATTGCATAAAAAAGTTGGCATGTATATAAAGAAGAGGCGAACTAGGGTTTTCGTTCTGTCTTAGCCGCAGAAACCCTCCATCTCCGAGAAAGCACCACACGGAGCATCCATGGTTACTTTCAGGGTAAAGCTTCCTTTTCTGAATCTCAACTCTCCCAGTCATAACGTTTGCAACATAAGTGAATGGAACTGAGTCTAATTCCTCTATCATTCTCTTCGTCTGTGTGTTTTCAATGTACGGAGCCATGGCACTGATTGTGTAATTTTCTGATGATGCGTTTTTTTTTTTTTTTTTTTTTTTTGCAGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAATTTGGTTGTTTAAGGAATGAGAAAAAGTGACCCGAGTTGTCTTATTTTGAAATGTTCGGTAGAGACCTTCGTATCAGCGGTTCTTCAATGTTTATTTTGTTTTTACTATATGTGGGATCAGACTTTAAATTTTTGGGTTTATTGCCATGTCTTTTGGTTTTTTATGGAAGTATATCGCCTTATGAAGTCTTAATATGGATATCCATATGGTTTTTTAGTGGCTATCTGGTGATAGAAATAGTACGACCAATACTGGATTCTTGAAATGTTGGGAACTATGGTAGTTTTATTTAATACGTGGGTTTTTCTTTTTCATTATAAGTTCAGGTTTCAAGGAGGATACATTTTATAAACATTGTTCTCTTTAACTATGGAGACTCCTTTTGTGATGCT

Coding sequence (CDS)

ATGATGCGTTTTTTTTTTTTTTTTTTTTTTTTGCAGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCTACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCTGAAGAAAGTAAAGAAGAGCAATGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAACCCAACAAAGATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATACCACAACATGTACAAGGAGTACAGAGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACACTGAAATGGCTTCTCGCCATAGGGTTAGGCATCCTTGCATCCAAATTATCAAGACAGCAACCGTCCCAGCCAAGCTTTGCAAGAGGGAAAGCACAAAGCAATTCCATGACTCCAAGATCAAATTCCCCTTGGTTTTCAAGACAGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCCTCAAGACCCAATTTGTTTATGTAA

Protein sequence

MMRFFFFFFFLQFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM*

Homology

[Close]

BLAST of CsGy6G035590 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 9.5e-90
Identity = 158/174 (90.80%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGR LPSE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAIN
Sbjct: 5   RFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           IIKTAT+PAKLCKRES+KQFH+SKIKFPLV + +RPP+RKLKT YKASRPNLFM
Sbjct: 125 IIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 328.2 bits (840), Expect = 6.1e-89
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAIN
Sbjct: 5   RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR PCIQ
Sbjct: 65  EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           IIKTATVPAKLCKRESTKQFH+SKIKFPLVF+ VRPP+RKLKTTYKA++PNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.0e-88
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAIN
Sbjct: 5   RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           IIKTATVPAKLCKRE TKQFH+SKIKFPLVF+ VRPP+RKLKTTYKAS+PNLFM
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.2e-87
Identity = 155/174 (89.08%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGR LP+  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAIN
Sbjct: 5   RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           IIKTATV  KLCKR++TKQFH S IKFPLV++ VRPPTRKLKTT+KASRPNLFM
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.5e-87
Identity = 153/175 (87.43%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 11  LQFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 70
           ++ HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LAI
Sbjct: 4   IRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAI 63

Query: 71  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCI 130
           NEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 123

Query: 131 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           QIIKTATVPA LCKRESTKQFH+SKIKFPLVF+ VRPPTRKLKTT+KA++PNLFM
Sbjct: 124 QIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. NCBI nr
Match: XP_004134633.1 (60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Csa_003074 [Cucumis sativus])

HSP 1 Score: 356 bits (913), Expect = 1.15e-123
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 5   RFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. NCBI nr
Match: XP_008439644.1 (PREDICTED: 60S ribosomal protein L18a [Cucumis melo] >KAA0052550.1 60S ribosomal protein L18a [Cucumis melo var. makuwa] >TYK13275.1 60S ribosomal protein L18a [Cucumis melo var. makuwa])

HSP 1 Score: 355 bits (910), Expect = 3.30e-123
Identity = 172/174 (98.85%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 5   RFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKAS+PNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. NCBI nr
Match: XP_023002909.1 (60S ribosomal protein L18a-like [Cucurbita maxima] >KAG6594475.1 60S ribosomal protein L18a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026472.1 60S ribosomal protein L18a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 353 bits (907), Expect = 9.45e-123
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 5   RFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. NCBI nr
Match: XP_038880985.1 (60S ribosomal protein L18a [Benincasa hispida])

HSP 1 Score: 353 bits (905), Expect = 1.91e-122
Identity = 171/174 (98.28%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 5   RFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVRHPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRHPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. NCBI nr
Match: XP_022926366.1 (60S ribosomal protein L18a-like [Cucurbita moschata])

HSP 1 Score: 353 bits (907), Expect = 2.13e-122
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 28  RFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 87

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 88  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 147

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 148 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 201

[Close]

BLAST of CsGy6G035590 vs. ExPASy TrEMBL
Match: A0A0A0KIJ4 (60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1)

HSP 1 Score: 356 bits (913), Expect = 5.56e-124
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 5   RFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. ExPASy TrEMBL
Match: A0A5D3CNU8 (60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008940 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 1.60e-123
Identity = 172/174 (98.85%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 5   RFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKAS+PNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. ExPASy TrEMBL
Match: A0A1S3AZ74 (60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 1.60e-123
Identity = 172/174 (98.85%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 5   RFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKAS+PNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. ExPASy TrEMBL
Match: A0A6J1KRT5 (60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111496677 PE=3 SV=1)

HSP 1 Score: 353 bits (907), Expect = 4.57e-123
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 5   RFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. ExPASy TrEMBL
Match: A0A6J1EEQ6 (60S ribosomal protein L18a-like OS=Cucurbita moschata OX=3662 GN=LOC111433535 PE=3 SV=1)

HSP 1 Score: 353 bits (907), Expect = 1.03e-122
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 28  RFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 87

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ
Sbjct: 88  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 147

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 185
           IIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 148 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 201

[Close]

BLAST of CsGy6G035590 vs. TAIR 10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 328.2 bits (840), Expect = 4.4e-90
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAIN
Sbjct: 5   RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR PCIQ
Sbjct: 65  EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           IIKTATVPAKLCKRESTKQFH+SKIKFPLVF+ VRPP+RKLKTTYKA++PNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. TAIR 10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 325.9 bits (834), Expect = 2.2e-89
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 12  QFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 71
           +FHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAIN
Sbjct: 5   RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64

Query: 72  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCIQ 131
           EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124

Query: 132 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           IIKTATVPAKLCKRE TKQFH+SKIKFPLVF+ VRPP+RKLKTTYKAS+PNLFM
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. TAIR 10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 321.2 bits (822), Expect = 5.3e-88
Identity = 153/175 (87.43%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 11  LQFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 70
           ++ HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LAI
Sbjct: 4   IRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAI 63

Query: 71  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCI 130
           NEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 123

Query: 131 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           QIIKTATVPA LCKRESTKQFH+SKIKFPLVF+ VRPPTRKLKTT+KA++PNLFM
Sbjct: 124 QIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of CsGy6G035590 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 320.5 bits (820), Expect = 9.1e-88
Identity = 153/175 (87.43%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 11  LQFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 70
           +  HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LAI
Sbjct: 138 IALHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAI 197

Query: 71  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRHPCI 130
           NEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR PCI
Sbjct: 198 NEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 257

Query: 131 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 186
           QIIKTATVPA LCKRESTKQFH+SKIKFPLVF+ VRPPTRKLKTT+KA++PNLFM
Sbjct: 258 QIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

The following BLAST results are available for this feature:

BLAST of CsGy6G035590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ATF5	9.5e-90	90.80	60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1	[more]
P51418	6.1e-89	90.23	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=...	[more]
Q9LUD4	3.0e-88	89.66	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=...	[more]
Q943F3	1.2e-87	89.08	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE...	[more]
Q8L7K0	7.5e-87	87.43	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=...	[more]

BLAST of CsGy6G035590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134633.1	1.15e-123	99.43	60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Cs...	[more]
XP_008439644.1	3.30e-123	98.85	PREDICTED: 60S ribosomal protein L18a [Cucumis melo] >KAA0052550.1 60S ribosomal...	[more]
XP_023002909.1	9.45e-123	98.28	60S ribosomal protein L18a-like [Cucurbita maxima] >KAG6594475.1 60S ribosomal p...	[more]
XP_038880985.1	1.91e-122	98.28	60S ribosomal protein L18a [Benincasa hispida]	[more]
XP_022926366.1	2.13e-122	98.28	60S ribosomal protein L18a-like [Cucurbita moschata]	[more]

BLAST of CsGy6G035590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIJ4	5.56e-124	99.43	60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1	[more]
A0A5D3CNU8	1.60e-123	98.85	60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3AZ74	1.60e-123	98.85	60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1	[more]
A0A6J1KRT5	4.57e-123	98.28	60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111496677 PE=3 SV=1	[more]
A0A6J1EEQ6	1.03e-122	98.28	60S ribosomal protein L18a-like OS=Cucurbita moschata OX=3662 GN=LOC111433535 PE...	[more]

BLAST of CsGy6G035590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34480.1	4.4e-90	90.23	Ribosomal protein L18ae/LX family protein	[more]
AT3G14600.1	2.2e-89	89.66	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	5.3e-88	87.43	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	9.1e-88	87.43	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.10		coord: 79..154 e-value: 1.3E-41 score: 142.8
None	No IPR available	GENE3D	3.10.20.10		coord: 8..78 e-value: 7.4E-38 score: 130.2
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 12..144
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 145..185
None	No IPR available	SUPERFAMILY	160374	RplX-like	coord: 78..153
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIRSF	PIRSF002190	Ribosomal_L18a	coord: 10..185 e-value: 1.1E-72 score: 241.0
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 14..135 e-value: 1.5E-54 score: 183.2
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 145..185
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 12..144
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	HAMAP	MF_00273	Ribosomal_L18Ae	coord: 13..76 score: 24.336386

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G035590.2	CsGy6G035590.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome