CsGy6G035545 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G035545
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 31319053 .. 31319292 (+)
RNA-Seq Expression	CsGy6G035545
Synteny	CsGy6G035545

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGA

mRNA sequence

ATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGA

Coding sequence (CDS)

ATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGA

Protein sequence

MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIASFFFLCCGGCRF*

Homology

[Close]

BLAST of CsGy6G035545 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 160 bits (406), Expect = 1.21e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60
          MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 VALVGIASFFFLCCGGCRF 79
          VALVGIASFFFLCCGGCRF
Sbjct: 61 VALVGIASFFFLCCGGCRF 79

[Close]

BLAST of CsGy6G035545 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133 bits (335), Expect = 7.80e-39
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60
          MDDAIDRKKTK  K+R FS QRLRDSWKWKFLK+FKWKRLNL +GF DAIIFRI SLFE 
Sbjct: 1  MDDAIDRKKTK--KRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60

Query: 61 VALVGIASFFFLCCGGCRF 79
          +AL+GIA FFFLCCGGCRF
Sbjct: 61 IALIGIAGFFFLCCGGCRF 77

[Close]

BLAST of CsGy6G035545 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112 bits (279), Expect = 4.68e-30
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60
          MDDAIDRKKTK  K+R FS QRLRDSWKWKFLK+FKWKRLNL +GF DAIIFRI SLFE 
Sbjct: 1  MDDAIDRKKTK--KRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60

Query: 61 VALVGIASFF 70
          +AL+GIA FF
Sbjct: 61 IALIGIAGFF 68

[Close]

BLAST of CsGy6G035545 vs. NCBI nr
Match: ESR62900.1 (hypothetical protein CICLE_v10017350mg [Citrus clementina])

HSP 1 Score: 73.2 bits (178), Expect = 7.55e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 11 KTMKKRVFSFQRL--RDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIAS 70
          K + +R   F+RL  R+S +WKFL   KWKRLNLQ+ FFD ++F+IVS+FE V LV  A 
Sbjct: 15 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 74

Query: 71 FFFLCCGGCRF 79
          FFFLCCG C F
Sbjct: 75 FFFLCCG-CHF 82

[Close]

BLAST of CsGy6G035545 vs. NCBI nr
Match: KDO78130.1 (hypothetical protein CISIN_1g036027mg [Citrus sinensis])

HSP 1 Score: 73.2 bits (178), Expect = 7.95e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 11 KTMKKRVFSFQRL--RDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIAS 70
          K + +R   F+RL  R+S +WKFL   KWKRLNLQ+ FFD ++F+IVS+FE V LV  A 
Sbjct: 17 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 76

Query: 71 FFFLCCGGCRF 79
          FFFLCCG C F
Sbjct: 77 FFFLCCG-CHF 84

[Close]

BLAST of CsGy6G035545 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 5.85e-50
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60
          MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 VALVGIASFFFLCCGGCRF 79
          VALVGIASFFFLCCGGCRF
Sbjct: 61 VALVGIASFFFLCCGGCRF 79

[Close]

BLAST of CsGy6G035545 vs. ExPASy TrEMBL
Match: V4UFE9 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.66e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 11 KTMKKRVFSFQRL--RDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIAS 70
          K + +R   F+RL  R+S +WKFL   KWKRLNLQ+ FFD ++F+IVS+FE V LV  A 
Sbjct: 15 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 74

Query: 71 FFFLCCGGCRF 79
          FFFLCCG C F
Sbjct: 75 FFFLCCG-CHF 82

[Close]

BLAST of CsGy6G035545 vs. ExPASy TrEMBL
Match: A0A067GHI9 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.85e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 11 KTMKKRVFSFQRL--RDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIAS 70
          K + +R   F+RL  R+S +WKFL   KWKRLNLQ+ FFD ++F+IVS+FE V LV  A 
Sbjct: 17 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 76

Query: 71 FFFLCCGGCRF 79
          FFFLCCG C F
Sbjct: 77 FFFLCCG-CHF 84

[Close]

BLAST of CsGy6G035545 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.68e-15
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 14 KKRVFSFQRLR--DSWKWKFLKN-FKWKRLNLQMGFFDAIIFRIVSLFETVALVGIASFF 73
          K R   F+RLR   +W+WKFL + FKWKRLNLQ+ F D ++FRI+S+FE + LV    FF
Sbjct: 5  KNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCFF 64

Query: 74 FLCCGGCRF 79
          +LCCG C F
Sbjct: 65 YLCCG-CHF 72

[Close]

BLAST of CsGy6G035545 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.47e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 15 KRVFSFQRL-RDSWKWKFLKN-FKWKRLNLQMGFFDAIIFRIVSLFETVALVGIASFFFL 74
          KR   F+RL ++SW+WKFL + FKWKRLN+Q+ FFD ++FRI S+ E + LV    FF+L
Sbjct: 12 KRWVLFKRLIKESWRWKFLGSAFKWKRLNIQLSFFDDVLFRIASVLEAIYLVATLCFFYL 71

Query: 75 CCGGCRF 79
          CCG C F
Sbjct: 72 CCG-CHF 77

[Close]

BLAST of CsGy6G035545 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 14 KKRVFSFQRLRDSWKWKFL---KNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIASFF 73
          K ++  ++  ++  + KFL      KWKRLNL+M F + + +RI+S+ E + LV   +FF
Sbjct: 4  KGKLSIWKTTKERTRLKFLGLGGGLKWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAFF 63

Query: 74 FLCCGGCRF 80
          FLCC GC+F
Sbjct: 64 FLCC-GCKF 71

The following BLAST results are available for this feature:

BLAST of CsGy6G035545 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G035545 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49382.1	1.21e-49	100.00	hypothetical protein Csa_004198 [Cucumis sativus]	[more]
KAG7034699.1	7.80e-39	82.28	hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581417.1	4.68e-30	80.00	hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ESR62900.1	7.55e-15	57.75	hypothetical protein CICLE_v10017350mg [Citrus clementina]	[more]
KDO78130.1	7.95e-15	57.75	hypothetical protein CISIN_1g036027mg [Citrus sinensis]	[more]

BLAST of CsGy6G035545 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLX9	5.85e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1	[more]
V4UFE9	3.66e-15	57.75	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 ...	[more]
A0A067GHI9	3.85e-15	57.75	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1	[more]
A0A7N2LSF8	5.68e-15	55.07	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A1R3FVP9	6.47e-15	55.22	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1	[more]

BLAST of CsGy6G035545 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46295.1	1.3e-06	40.58	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726:SF3	TRANSMEMBRANE PROTEIN	coord: 13..79
None	No IPR available	PANTHER	PTHR33726	TRANSMEMBRANE PROTEIN	coord: 13..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G035545.1	CsGy6G035545.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane