CsGy6G035430 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G035430
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA-binding protein
Location	Gy14Chr6: 31244400 .. 31247798 (+)
RNA-Seq Expression	CsGy6G035430
Synteny	CsGy6G035430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTTCCCCTATTTCACTTTCCTGTTTTCGATTCATCTCTACTGTCTCCAAACCCTGCAGTTTCCAATTTAATCAAATGCTGCTTCAACTTAATTTTACATTTTATTTTTATTGTTATTATTATATTTGCTTTTTATTCATTCGAACTACGGTGAATTCAATGCGGAGTTCTCCGTTTTTCTTCAGTAATATTTATTCCGCTCCTAATTAGGGGTTTATCTTTTATGTAAAGTGTTTTTTTTTTCTTGTGTTCGTCCTTAAATAATAAATTAGTAATTGTATTTGCACGTACAAGAATTCTTAGAATTAGGTTTTTCGATATCCGTGGGTGTCCGGACAACCCACTGAGCCTACCACATCTGGGCGTCAAGGAAACACCTCGAAAATTAAATTGTTAAGTAGGTGACCAGTTGTGATTAAATTAGATTCTGATAGTCCATTTCCAGGTGAAATATGTGAGCCACTATATCTATAGAGTATAGACAAGCTGAAGCGCACTCTACGCATTGAGTAGTTGGTGGTTTTTGGATTTGAGAAATATTCATGTGATAAATTTATGTTCACGAATCACGCTGCAGTTTGTGCTAAATGAAGTGCGCCGTAGGTTGCTTTATCTATATCTCATTAACGGGTTACGGTGAAAAGGGTTGTTTATTTTATGTATGTATGACAAAATATTTTACCCTCATGTAGAATGATCCAGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGTAAGCTGTAATTCTTTTGTTTGCATGCGTAGTCATTGCTTACATTTTACTTGTTCATGGACATCTTTGCTGACTTCTAATTATGATCAGGGGAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGGTTCTTAATTTCATTTTCATTATTTTGCAGTTGATTTTTAGTTACCACTTCTATTATTCAAGTTCTGCTTTTTTAATATGCATATCATAACAACTACTTTCACTTTCAGTGAAGCAGAGGAACGTAGGCAAATGATGCTGAGTCAGATTCTGTCAATGCAAGCCAGAGAAAGACGTAAGTTGAAACGTGAAAGTTATTTATTCTTGAACTTTGGAGTAATCTAGTTTCTTTTATCTATGTGTTTTATGCGATCTGTGATTGTGTCAATATGGATCTTTTCCTTCCTATTTTTGTTTGAAATTTTGGATCCGATTCAAATCCTGAGTTATTCATGAACTTAATGTAATTTATTGTGTAGTTGAATATTGTATTTACTCGGTGACCTACGTGTCTGAATAGTGTGTGATCATGGAATTTCGAAAACTAGCTGATTCAATCATTTACTAGACTTGGAAGTAACTGTAGGTGTAAGGTTAGTACAATAAGTTTGGTGGCTGCTCTTAGTAGGAATTTGGAATTAAGGTAGCAGAAGGATCTTTTAAGAGAAAATTAGGAATTTATGGAGATTTCAATACACGGGTTACCGTAGTCATTAAAAATGAGACATACTCAACGACTAACTAAAGAGATCATGAGTTCAGTCAATGGTGGCCGCCTACTTAGGAATTAATTTTCTACGAGATTACTTGACATCCAATTGTTGTAAGGTCAGGCGGGTTCGTTTCGTGAGATTAGTCGAGCTACGTGTAAGCTAGTCCGTACACTTGCGGATATAAAAAATTTCAGCTTTCATTCTGTCTAGAAGTGAAAAAGAGTTCTGTTATTTCCCTTCATGTACAAATCGCTTGAGTTGGCTTATTTAGAAGAAAGTCAGAGAAACTTTTGTTGGCTGTGGATTTAAGAGTGCAAAGGTTCTCATGCTTAATGCAACAGGACCATTGTATAACTCCCTGTGACTAGGTAGGAACCTTTATATATTTATTTTTTCCAATGAGAAGTGGTGTATGGAGTAGGATGAAGCTTTGGTCGCAGCTAAGTTTATCGTTATTGTTAGTTCAATTTTAATCTACTTTGGCATGGTCCATGGACTTGGCTGGGAGCATGTTTGACCCTTCTACTTTTCACTGTCTTGATGTTAAAGTATTGGTATATAATTAAATTTACCATAACCCATCAGCTTAAACTTTTGGGTTGATTGGTGATTTTGTCTCGGTATTGAAGCAGAAAATCATTTATTTGAACCCCTGTAGTGTCATTTCTTCTCGAATTAATATTGGTTTGTACTTGTTAGGTTTTCTACAAATTATCAACTCTACAAATGAGGGGGAGTGCTAGCATTGATTGAATTTAAATTTTCATAAACTATCGACTTAAGCTTTTAAGTTGATTGTGATCTAGCAAGTGAAACATATTAGATCATATAATTATTGTTCATTGTTTCACAGCTATATTTTGAGGCTTTACCATGATTAAGTTTACATCAGTTGTTTCTAGCTCTTACTTTTTTCTTTTTTTTATCAATGGTTGAAATTTGTACAAGAGCTTAAGATATCAATCTTTTGTTATGCTTATTTTTATTTATTGATTTTAAATTAATTATAATAATAACAAACCAATTTTACAAGAGATGACATTGAACAAAATAAAGGGTTGGATCATACAATAATTCAGGTCAAAAGCCCCAAAAGGAGTCCAAATTAAAAATTTTGTTCCTTGTTTAACAATTAATTTGTATATTATTATTTCTCAACAGTAAAGTTGAATACCTGTCAATTGTACTTTCTGCAACTGAGTAGATTTGTGGTTTTTGCATTGAGACCTTTGGCTATACAACATAGTTCTCAAAAAAGGTTACTGAACTAAAAGTATAAAGATTTTGAGTATTCTTTTTTTGTTGAATTTTTTATGTTACTAGACCTGAATTTACCTCCAGCCTTATTTTGGAAAGGTAGTAGTCATTCTCGTCAAGCTGATTTACTATTAGCTGCCGGTGGAATGGGAATGTTATGCCCCAGTTCGTGATTCTTGCATTTAGTGATTTAGGTTACTAGCTATTTTGTCCTATTCATTTTTTTTTTCTGTGCTTTTATGCAGTTTCTCGAATTGCATTGGTTAAACCTGAGAAGGCACGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGGCAAATTGTAGAGAAGGTACGGTAGTATATTATTTTAGTTTCTCTGGCAAAATTGTTACACCTACATTTAATTTAGAATATGATGAAACCAGTATGAATGGAAGTTGAAAGAACGGATTTTACCATTTCTTTTTAGGTCTCTGAAGAGAGGCTTATTACATTGCTAGAACAAATCAACAATCAGACCACAAAACAGACGAAAGTCACTGTGAGTTCTCATTACTCTATAGGTGTCTGCTGAAATATGGCATATTGTCCTAATGGTCTTCATATATTTACCATACAGATACAAAGGCGTCGAAGCGTTCTAGAGGATGACGATTAG

mRNA sequence

ATGAATGATCCAGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGGAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGTAGGCAAATGATGCTGAGTCAGATTCTGTCAATGCAAGCCAGAGAAAGACTTTCTCGAATTGCATTGGTTAAACCTGAGAAGGCACGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGGCAAATTGTAGAGAAGGTCTCTGAAGAGAGGCTTATTACATTGCTAGAACAAATCAACAATCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTAGAGGATGACGATTAG

Coding sequence (CDS)

ATGAATGATCCAGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGGAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGTAGGCAAATGATGCTGAGTCAGATTCTGTCAATGCAAGCCAGAGAAAGACTTTCTCGAATTGCATTGGTTAAACCTGAGAAGGCACGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGGCAAATTGTAGAGAAGGTCTCTGAAGAGAGGCTTATTACATTGCTAGAACAAATCAACAATCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTAGAGGATGACGATTAG

Protein sequence

MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD*

Homology

[Close]

BLAST of CsGy6G035430 vs. ExPASy Swiss-Prot
Match: Q54YS0 (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-19
Identity = 61/114 (53.51%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 15  QELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKAR 74
           Q+L   +G G   +PE Q+ QE  R EA ERRQ +L QIL+  ARERLSRI +VKPEK+R
Sbjct: 9   QQLSQMQGQGF--DPEAQQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSR 68

Query: 75  GVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 129
            +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ TK+T +T++RR   +EDDD
Sbjct: 69  QIEDLIIRAAQTGQLTERVDDAKLISLLEQL-SEKTKKTTITMKRR--TIEDDD 117

[Close]

BLAST of CsGy6G035430 vs. ExPASy Swiss-Prot
Match: O14737 (Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EA+    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRRQRLAELQAKHG------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLS +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRR 120

Query: 121 RSVLEDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of CsGy6G035430 vs. ExPASy Swiss-Prot
Match: P56812 (Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EA+    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRKQRLAELQAKHG------DPGDAAQQEAKQREAEMRNSILAQVLDQSARA 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLS +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRR 120

Query: 121 RSVLEDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of CsGy6G035430 vs. ExPASy Swiss-Prot
Match: Q5RBT0 (Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EA+    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRRQRLAELQAKHG------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLS +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRR 120

Query: 121 RSVLEDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of CsGy6G035430 vs. ExPASy Swiss-Prot
Match: Q2HJH9 (Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-15
Identity = 54/128 (42.19%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M + ELEA+R++R+ EL A+ G           AQ+EA+    E R  +L+Q+L   AR 
Sbjct: 1   MAEQELEALRKQRLAELQAKHG------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLS +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRR 120

Query: 121 RSVLEDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of CsGy6G035430 vs. NCBI nr
Match: XP_008439666.1 (PREDICTED: DNA-binding protein DDB_G0278111 [Cucumis melo] >XP_011658277.1 DNA-binding protein DDB_G0278111 isoform X2 [Cucumis sativus] >KAE8647741.1 hypothetical protein Csa_003574 [Cucumis sativus])

HSP 1 Score: 228 bits (581), Expect = 8.60e-75
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE
Sbjct: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 128
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CsGy6G035430 vs. NCBI nr
Match: XP_031744105.1 (DNA-binding protein DDB_G0278111 isoform X1 [Cucumis sativus])

HSP 1 Score: 226 bits (576), Expect = 5.49e-74
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 2   NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARER 61
           NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARER
Sbjct: 5   NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARER 64

Query: 62  LSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 65  LSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 124

Query: 122 SVLEDDD 128
           SVLEDDD
Sbjct: 125 SVLEDDD 131

[Close]

BLAST of CsGy6G035430 vs. NCBI nr
Match: XP_038881892.1 (DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding protein DDB_G0278111 [Benincasa hispida])

HSP 1 Score: 225 bits (573), Expect = 1.43e-73
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M+DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 128
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CsGy6G035430 vs. NCBI nr
Match: XP_022925642.1 (DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata] >XP_022978919.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita maxima] >KAG6581408.1 Programmed cell death protein 5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034694.1 Programmed cell death protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221 bits (563), Expect = 4.78e-72
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M+DPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 128
           RSVL+DDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of CsGy6G035430 vs. NCBI nr
Match: XP_022926831.1 (DNA-binding protein DDB_G0278111-like [Cucurbita moschata] >XP_023003579.1 DNA-binding protein DDB_G0278111-like [Cucurbita maxima] >KAG7026483.1 Programmed cell death protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221 bits (562), Expect = 6.79e-72
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M+DPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 128
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CsGy6G035430 vs. ExPASy TrEMBL
Match: A0A1S3AZB0 (DNA-binding protein DDB_G0278111 OS=Cucumis melo OX=3656 GN=LOC103484392 PE=3 SV=1)

HSP 1 Score: 228 bits (581), Expect = 4.16e-75
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE
Sbjct: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 128
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CsGy6G035430 vs. ExPASy TrEMBL
Match: A0A0A0KKK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522140 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 2.66e-74
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 2   NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARER 61
           NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARER
Sbjct: 5   NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARER 64

Query: 62  LSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 65  LSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 124

Query: 122 SVLEDDD 128
           SVLEDDD
Sbjct: 125 SVLEDDD 131

[Close]

BLAST of CsGy6G035430 vs. ExPASy TrEMBL
Match: A0A6J1IVC3 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478726 PE=3 SV=1)

HSP 1 Score: 221 bits (563), Expect = 2.31e-72
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M+DPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 128
           RSVL+DDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of CsGy6G035430 vs. ExPASy TrEMBL
Match: A0A6J1EC84 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432996 PE=3 SV=1)

HSP 1 Score: 221 bits (563), Expect = 2.31e-72
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M+DPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 128
           RSVL+DDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of CsGy6G035430 vs. ExPASy TrEMBL
Match: A0A6J1KTQ8 (DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC111497139 PE=3 SV=1)

HSP 1 Score: 221 bits (562), Expect = 3.29e-72
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60
           M+DPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 128
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CsGy6G035430 vs. TAIR 10
Match: AT1G29850.1 (double-stranded DNA-binding family protein )

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-46
Identity = 108/131 (82.44%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGM---GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQ 60
           M DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS Q
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQ 60

Query: 61  ARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTI 120
           ARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT 
Sbjct: 61  ARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTY 120

Query: 121 QRRRSVLEDDD 129
           QRRR V  DDD
Sbjct: 121 QRRRGV--DDD 129

[Close]

BLAST of CsGy6G035430 vs. TAIR 10
Match: AT1G29850.2 (double-stranded DNA-binding family protein )

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-46
Identity = 108/132 (81.82%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGM----GSQNNPEQQKAQEEARSEAEERRQMMLSQILSM 60
           M DPELEAIRQRRMQELMA++GM    G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS 
Sbjct: 1   MADPELEAIRQRRMQELMARQGMQGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSS 60

Query: 61  QARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT 120
           QARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT
Sbjct: 61  QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVT 120

Query: 121 IQRRRSVLEDDD 129
            QRRR V  DDD
Sbjct: 121 YQRRRGV--DDD 130

[Close]

BLAST of CsGy6G035430 vs. TAIR 10
Match: AT1G29850.3 (double-stranded DNA-binding family protein )

HSP 1 Score: 174.1 bits (440), Expect = 7.3e-44
Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MNDPELEAIRQRRMQELMAQRGM---GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQ 60
           M DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS Q
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQ 60

Query: 61  ARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTI 120
           ARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT+
Sbjct: 61  ARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTV 120

Query: 121 QRRRSV 124
               +V
Sbjct: 121 STNGAV 126

The following BLAST results are available for this feature:

BLAST of CsGy6G035430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54YS0	4.6e-19	53.51	DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G02...	[more]
O14737	4.8e-16	42.97	Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3	[more]
P56812	4.8e-16	42.97	Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3	[more]
Q5RBT0	4.8e-16	42.97	Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3	[more]
Q2HJH9	1.8e-15	42.19	Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3	[more]

BLAST of CsGy6G035430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439666.1	8.60e-75	100.00	PREDICTED: DNA-binding protein DDB_G0278111 [Cucumis melo] >XP_011658277.1 DNA-b...	[more]
XP_031744105.1	5.49e-74	100.00	DNA-binding protein DDB_G0278111 isoform X1 [Cucumis sativus]	[more]
XP_038881892.1	1.43e-73	98.44	DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding...	[more]
XP_022925642.1	4.78e-72	96.09	DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata] >XP_022978...	[more]
XP_022926831.1	6.79e-72	96.09	DNA-binding protein DDB_G0278111-like [Cucurbita moschata] >XP_023003579.1 DNA-b...	[more]

BLAST of CsGy6G035430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZB0	4.16e-75	100.00	DNA-binding protein DDB_G0278111 OS=Cucumis melo OX=3656 GN=LOC103484392 PE=3 SV...	[more]
A0A0A0KKK2	2.66e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522140 PE=3 SV=1	[more]
A0A6J1IVC3	2.31e-72	96.09	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EC84	2.31e-72	96.09	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KTQ8	3.29e-72	96.09	DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC11149713...	[more]

BLAST of CsGy6G035430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29850.1	2.7e-46	82.44	double-stranded DNA-binding family protein	[more]
AT1G29850.2	3.5e-46	81.82	double-stranded DNA-binding family protein	[more]
AT1G29850.3	7.3e-44	80.16	double-stranded DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036883	PDCD5-like superfamily	GENE3D	1.10.8.140		coord: 2..110 e-value: 1.9E-34 score: 119.9
IPR036883	PDCD5-like superfamily	SUPERFAMILY	46950	Double-stranded DNA-binding domain	coord: 9..117
IPR002836	PDCD5-like	PIRSF	PIRSF015730	TFAR19	coord: 1..128 e-value: 7.0E-38 score: 127.5
IPR002836	PDCD5-like	PFAM	PF01984	dsDNA_bind	coord: 9..120 e-value: 2.4E-31 score: 108.3
IPR002836	PDCD5-like	PANTHER	PTHR10840	PROGRAMMED CELL DEATH PROTEIN 5	coord: 1..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..46
None	No IPR available	PANTHER	PTHR10840:SF3	BNAA07G07610D PROTEIN	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G035430.2	CsGy6G035430.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding