CsGy6G035250 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G035250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 31142041 .. 31143907 (+)
RNA-Seq Expression	CsGy6G035250
Synteny	CsGy6G035250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTTCAAATCACCAAGTATTACTGCCTCATTTCATACATTGTAGTTGTAATTGCAATGATGGGTGAGCCATGCTGGGGAGGCTCCAAAACTATGGCGCCCTTGAGTCGATGGAAGGTGGTGATTTTTAGCCAATTGAATCCAGGCGAGAATTTATTAGTTCATTGTAAATCAAAAGACAACGATTTGGGCGAACATTCGTTGCAAGTGAGTCAGAATTTTTCATGGAAATTCAAAGAAAACTTGTTTTCTACAACACTGTTTTGGTGTACTCTAACAACTTCATCGAAGAAAAAAGTAACAATGGATGTGTTTTGGCCAGAGAGACACAATTGGCTTGCTATTCGATGCAGTTACAGAACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTAGTCAACAAGAATGCAAGGGAATTTGTGCGTAAATGGGACAGTTAATTTAATAGCCCTTTTAAAAGTAATTTTAAAATAACTTTTATACATATAAAATGTAATTTCCATATATGTCAATCTCCACCTTATTATTAATAAATAAATTAACAAAATATATGTTTGACTCTAAAAGTTGTATAGTATGATGTGAATGAAATTAAAGTATGATACTAAAATAGAGTAATTAAGAATGAGTAGAAAGTTTAGACGGTGGAAACGACACTTTCGTATTAATTAAATCCTAATTTTAATAATGAAACGTGACAAAAATTAGATCATAGGATAAAAAGGGAATATACCATAGAGAATGGAAGAAAAAGGAATAAAATATTTGTTAATTAGGTTAATTAATTAAAATTAATAATATATTAACGGTGTAATTAAAAAAGGAGTAAACGTTTAGAGAGACGGTGGTAAGAATGAATGCGTAAAAACCTTACAGCTGTAAATCACTGGAGAGTCAACACCAATTGCAATTCAAGAATTCCAACAACCTAACTCCTCCATAAACCCTAGACTTATCATCCCTTCCCCTTCCCTCTCCTTCTTCCCGCGCTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTTCGATGCTTTCATCTTACCCCTCCTCCATCTCTTCAATCTCCACTCTTCCGCTGCTGCTGCTGCTCTCTACTCGATTTTGGTAATTTCCTCTTCTTTCTCCCTACTAACTCTTCTCTCCCGCCGCCGGCTTTTTGGCGGCTTCGGGTTTCCTTCAACTTCCTTTCCTTTATAGGGTTTTATGCTTTTTTCTGGAACTTTGTTGTCTATTGATTTCAATTTAATCGATTTGAGTTAATTTATGTTGTTCCTCTGTTCCTTGTTTGTTTTCCATCCTCTGTTTTATTGTTTCTTATCGCTTCGAGATTTCGAGATCACGAAACTAGGGTTTGCTTATACTTCTGTAAATTTTGCTTGAGTTTGTTTAATTCTTCTTGATCTTTGATCTTTTGCTATTTTCTTTTCGTGATCTTTCAACTTTTATGTTGACGGTAGTTCCGAGATACGTCCTGTGGATTCTGAATTTTGCTTTATGTTTTTAGTTTCAGCTCGTTTCGTTCCCAATAGAAACTCTTCCTTGTTCTCACTACGCAATTTCAAGTGCTTATGTTTCGAGAGCGCGTTTTTTTTTTTTGTGAGGACATGTTTTGTTAGTTGCTGATAGCACCACGGGGGCCGTTTTGTTTGGTCCCATGTTGGTGGAATTATGAGATGCTATAATCTCACGTCGTTGGGTTTTTTTTTTTGTAAGTCATTTAGTGGGTTACGGGTCTATTTTAAGACTGAATTTTATTTTCTATACTGGCTTCTGCAGGTTAATTTCGAGATGAGTAGTTCTTACATCCTTCCTTATCTGGTTGAAGAATGCCACTTTTCTGAAGGTCTTGGTCGATTTTGA

mRNA sequence

ATGGGTGTTCAAATCACCAAGTATTACTGCCTCATTTCATACATTGTAGTTGTAATTGCAATGATGGAATTCCAACAACCTAACTCCTCCATAAACCCTAGACTTATCATCCCTTCCCCTTCCCTCTCCTTCTTCCCGCGCTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTTCGATGCTTTCATCTTACCCCTCCTCCATCTCTTCAATCTCCACTCTTCCGCTGCTGCTGCTGCTCTCTACTCGATTTTGGTTAATTTCGAGATGAGTAGTTCTTACATCCTTCCTTATCTGGTTGAAGAATGCCACTTTTCTGAAGGTCTTGGTCGATTTTGA

Coding sequence (CDS)

ATGGGTGTTCAAATCACCAAGTATTACTGCCTCATTTCATACATTGTAGTTGTAATTGCAATGATGGAATTCCAACAACCTAACTCCTCCATAAACCCTAGACTTATCATCCCTTCCCCTTCCCTCTCCTTCTTCCCGCGCTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTTCGATGCTTTCATCTTACCCCTCCTCCATCTCTTCAATCTCCACTCTTCCGCTGCTGCTGCTGCTCTCTACTCGATTTTGGTTAATTTCGAGATGAGTAGTTCTTACATCCTTCCTTATCTGGTTGAAGAATGCCACTTTTCTGAAGGTCTTGGTCGATTTTGA

Protein sequence

MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFDAFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF*

Homology

[Close]

BLAST of CsGy6G035250 vs. NCBI nr
Match: KGN49347.1 (hypothetical protein Csa_003911 [Cucumis sativus])

HSP 1 Score: 217 bits (552), Expect = 7.00e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD 60
           MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD
Sbjct: 1   MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD 60

Query: 61  AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF 112
           AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF
Sbjct: 61  AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF 112

[Close]

BLAST of CsGy6G035250 vs. ExPASy TrEMBL
Match: A0A0A0KLT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520450 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 3.39e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD 60
           MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD
Sbjct: 1   MGVQITKYYCLISYIVVVIAMMEFQQPNSSINPRLIIPSPSLSFFPRLFSSRGALRPLFD 60

Query: 61  AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF 112
           AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF
Sbjct: 61  AFILPLLHLFNLHSSAAAAALYSILVNFEMSSSYILPYLVEECHFSEGLGRF 112

The following BLAST results are available for this feature:

BLAST of CsGy6G035250 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G035250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49347.1	7.00e-71	100.00	hypothetical protein Csa_003911 [Cucumis sativus]	[more]

BLAST of CsGy6G035250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLT6	3.39e-71	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520450 PE=4 SV=1	[more]

BLAST of CsGy6G035250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G035250.2	CsGy6G035250.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane