CsGy6G035040 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G035040
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 31027848 .. 31028271 (-)
RNA-Seq Expression	CsGy6G035040
Synteny	CsGy6G035040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACGCCGGGGCTTGGAACGGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGAAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGGCATGGTATTGGTAGGTAGGAGTCTGGCGGCGAGTGAAGTGGGAGCAGAGAATGCGAATAGAAGAGCTAAAATGAGAGAGAAAGTGATGAATGTGAAGCGAGGCATGGAGATTGAAAATAATTAGAGATTTTAGAGTTAAAACCGTGGTAACTTTTTGGTTATTTGAAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTGGAGAAAGGCATGGTGTGGGGAAGAAGCAAAGAGTCAACATCAAATGGGTTTGA

mRNA sequence

ATGGCCGACGCCGGGGCTTGGAACGGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGAAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGGCATGGTATTGGTAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTGGAGAAAGGCATGGTGTGGGGAAGAAGCAAAGAGTCAACATCAAATGGGTTTGA

Coding sequence (CDS)

ATGGCCGACGCCGGGGCTTGGAACGGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGAAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGGCATGGTATTGGTAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTGGAGAAAGGCATGGTGTGGGGAAGAAGCAAAGAGTCAACATCAAATGGGTTTGA

Protein sequence

MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKGRGGVIYSIKLEGGERHGVGKKQRVNIKWV*

Homology

[Close]

BLAST of CsGy6G035040 vs. NCBI nr
Match: KGN49323.1 (hypothetical protein Csa_002945 [Cucumis sativus])

HSP 1 Score: 180 bits (457), Expect = 4.08e-57
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60
          MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG
Sbjct: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60

Query: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 89
          RGGVIYSIKLEGGERHGVGKKQRVNIKWV
Sbjct: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 89

[Close]

BLAST of CsGy6G035040 vs. NCBI nr
Match: KAA0052606.1 (hypothetical protein E6C27_scaffold120G002140 [Cucumis melo var. makuwa] >TYK13221.1 hypothetical protein E5676_scaffold255G008360 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 3.48e-26
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHG 52
          MADAGAWN LDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHG
Sbjct: 21 MADAGAWNRLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHG 72

[Close]

BLAST of CsGy6G035040 vs. ExPASy TrEMBL
Match: A0A0A0KIB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519740 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.97e-57
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60
          MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG
Sbjct: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60

Query: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 89
          RGGVIYSIKLEGGERHGVGKKQRVNIKWV
Sbjct: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 89

[Close]

BLAST of CsGy6G035040 vs. ExPASy TrEMBL
Match: A0A5A7UEL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008360 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 1.68e-26
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHG 52
          MADAGAWN LDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHG
Sbjct: 21 MADAGAWNRLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHG 72

The following BLAST results are available for this feature:

BLAST of CsGy6G035040 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G035040 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49323.1	4.08e-57	100.00	hypothetical protein Csa_002945 [Cucumis sativus]	[more]
KAA0052606.1	3.48e-26	98.08	hypothetical protein E6C27_scaffold120G002140 [Cucumis melo var. makuwa] >TYK132...	[more]

BLAST of CsGy6G035040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB1	1.97e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519740 PE=4 SV=1	[more]
A0A5A7UEL8	1.68e-26	98.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy6G035040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G035040.2	CsGy6G035040.2	mRNA