CsGy6G029650 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G029650
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionProstatic spermine-binding protein
LocationGy14Chr6: 28190515 .. 28190744 (-)
RNA-Seq ExpressionCsGy6G029650
SyntenyCsGy6G029650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTTATATCTATCATGTCATCGGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGCGAGTGGGGGATAGATGTTGAGGAATGGGAAAGCCAGGACTTGGATTACTGCCCTCCGCCGTATCTTCTGGCGGAAGGACGAGTTAACGACAACGACAAAGCGTCCGATGAACAACCTCCAAGTCTTTCTGAGCCTCCGTCGCAGGCTTGCCGTTCATGTTGA

mRNA sequence

TACTTATATCTATCATGTCATCGGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGCGAGTGGGGGATAGATGTTGAGGAATGGGAAAGCCAGGACTTGGATTACTGCCCTCCGCCGTATCTTCTGGCGGAAGGACGAGTTAACGACAACGACAAAGCGTCCGATGAACAACCTCCAAGTCTTTCTGAGCCTCCGTCGCAGGCTTGCCGTTCATGTTGA

Coding sequence (CDS)

ATGTCATCGGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGCGAGTGGGGGATAGATGTTGAGGAATGGGAAAGCCAGGACTTGGATTACTGCCCTCCGCCGTATCTTCTGGCGGAAGGACGAGTTAACGACAACGACAAAGCGTCCGATGAACAACCTCCAAGTCTTTCTGAGCCTCCGTCGCAGGCTTGCCGTTCATGTTGA

Protein sequence

MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSLSEPPSQACRSC*
Homology
BLAST of CsGy6G029650 vs. NCBI nr
Match: KGN48742.1 (hypothetical protein Csa_004391 [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 4.48e-46
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60
          MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60

Query: 61 SEPPSQACRSC 71
          SEPPSQACRSC
Sbjct: 61 SEPPSQACRSC 71

BLAST of CsGy6G029650 vs. NCBI nr
Match: KAA0036308.1 (prostatic spermine-binding protein [Cucumis melo var. makuwa] >TYK12702.1 prostatic spermine-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 4.26e-40
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0

Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDND---KASDEQP 60
          MSSVSLEAFAMAGMEYSGEWGIDVE+WESQDLDYCPPPYLLAEGRVNDND   KASD+Q 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60

Query: 61 PSLSEPPSQACRS 70
          PSLSEPPSQACRS
Sbjct: 61 PSLSEPPSQACRS 73

BLAST of CsGy6G029650 vs. NCBI nr
Match: KAG7034201.1 (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.0 bits (227), Expect = 8.78e-20
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 0

Query: 3   SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSLSE 62
           SVSLEA AMAGM+ SGEWGIDVEEWE+QDLD CPPPYLLAE R  D+D+AS++  PS SE
Sbjct: 364 SVSLEALAMAGMD-SGEWGIDVEEWETQDLDRCPPPYLLAEER--DDDEASEQ--PSRSE 423

Query: 63  PPSQACR 69
           PPSQ+ R
Sbjct: 424 PPSQSRR 425

BLAST of CsGy6G029650 vs. NCBI nr
Match: KAG6604036.1 (Zinc finger protein STOP1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 1.63e-19
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 0

Query: 3   SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSLSE 62
           SVSLEA AMAGM+ SGEWGIDVEEWE+QDLD CPPPYLLAE R  D+D+AS++  PS SE
Sbjct: 359 SVSLEALAMAGMD-SGEWGIDVEEWETQDLDRCPPPYLLAEER--DDDEASEQ--PSGSE 418

Query: 63  PPSQACR 69
           PPSQ+ R
Sbjct: 419 PPSQSRR 420

BLAST of CsGy6G029650 vs. NCBI nr
Match: XP_022132368.1 (uncharacterized protein LOC111005244 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 3.51e-12
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVND 48
          +VSLEA AMAGM+ SG WG+D +EWE+QD D  PPPYLLAEG  N+
Sbjct: 2  TVSLEALAMAGMD-SGNWGVDFDEWETQDSDQYPPPYLLAEGPDNE 46

BLAST of CsGy6G029650 vs. ExPASy TrEMBL
Match: A0A0A0KK23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499860 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 2.17e-46
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60
          MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60

Query: 61 SEPPSQACRSC 71
          SEPPSQACRSC
Sbjct: 61 SEPPSQACRSC 71

BLAST of CsGy6G029650 vs. ExPASy TrEMBL
Match: A0A5D3CMY4 (Prostatic spermine-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002900 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 2.06e-40
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0

Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDND---KASDEQP 60
          MSSVSLEAFAMAGMEYSGEWGIDVE+WESQDLDYCPPPYLLAEGRVNDND   KASD+Q 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60

Query: 61 PSLSEPPSQACRS 70
          PSLSEPPSQACRS
Sbjct: 61 PSLSEPPSQACRS 73

BLAST of CsGy6G029650 vs. ExPASy TrEMBL
Match: A0A6J1BW23 (uncharacterized protein LOC111005244 OS=Momordica charantia OX=3673 GN=LOC111005244 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.70e-12
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVND 48
          +VSLEA AMAGM+ SG WG+D +EWE+QD D  PPPYLLAEG  N+
Sbjct: 2  TVSLEALAMAGMD-SGNWGVDFDEWETQDSDQYPPPYLLAEGPDNE 46

BLAST of CsGy6G029650 vs. ExPASy TrEMBL
Match: A0A1Q3CWR7 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.66e-10
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAE 43
          SVSLEA AMAG++Y+ EWG+D EEWE +DL+  PPP+LLAE
Sbjct: 2  SVSLEALAMAGLDYN-EWGLDTEEWERKDLETMPPPHLLAE 41

BLAST of CsGy6G029650 vs. ExPASy TrEMBL
Match: A0A7J8Z714 (Uncharacterized protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_019228 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.95e-10
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAE 43
          SVS+EA AMAG++Y+ EWG+D+E+WE  D   CPPP+LLAE
Sbjct: 2  SVSIEALAMAGVDYN-EWGLDIEKWEDDDDSQCPPPHLLAE 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN48742.14.48e-46100.00hypothetical protein Csa_004391 [Cucumis sativus][more]
KAA0036308.14.26e-4091.78prostatic spermine-binding protein [Cucumis melo var. makuwa] >TYK12702.1 prosta... [more]
KAG7034201.18.78e-2074.63Protein SENSITIVE TO PROTON RHIZOTOXICITY 1, partial [Cucurbita argyrosperma sub... [more]
KAG6604036.11.63e-1974.63Zinc finger protein STOP1-like protein, partial [Cucurbita argyrosperma subsp. s... [more]
XP_022132368.13.51e-1267.39uncharacterized protein LOC111005244 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KK232.17e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499860 PE=4 SV=1[more]
A0A5D3CMY42.06e-4091.78Prostatic spermine-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A6J1BW231.70e-1267.39uncharacterized protein LOC111005244 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A1Q3CWR71.66e-1068.29Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4... [more]
A0A7J8Z7142.95e-1063.41Uncharacterized protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_019228 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G029650.1CsGy6G029650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane