CsGy6G029570 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G029570
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Polyadenylate-binding protein 2-like
Location	Gy14Chr6: 28152521 .. 28156602 (+)
RNA-Seq Expression	CsGy6G029570
Synteny	CsGy6G029570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTGAAGCAAAGATCCAAGTCTTTGGGCTGAGCTCTCATGGACTTGGGTTGACTCACGCTTGGGACCTTAACTAGCAGTCCTTTGAAACGAGTCTTTATAGCTGATTTATTGTTCATTATAAAATGGTCCACGGTTGGGCTCTATAGATTACCCTATATATCGATCGTATTGCGGAAGCCTGTTCGGACACAATTAGGAAGAACGGAAATGGAGGAAGAGGAACACGAGGTTTACGGCGGAGAGATCCCGGTCGAGGAGGGTGACATTGACATGTCTGCCACTGATGACGACGCCATCAAGGTTCCCTCTGTCCTCTATTTCACAACTGTGGAGATCCATTATCAATACAGTTGTGTGATGAAAGCTTCATCTGTTTGGTGTGTGAATTTGTTGTGTTCTGTGGATGTTGCAGGAGCTGGACGAGATGAAGAAGAGATTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAAATGCAAGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGGTTTACTTCCATCTCGAATTACCTTTGACTATATTAATTTTGAAGTTCATATGAAGCTACTGTAGCGTCTTCCATCTGCCTGATTATAGTATCTCATACAGATCCTGCTGGTTCGGCTGTAAGTCAAGAAAGCAAAGAAGAGGCAGATTCGCGATCTGTATTTGTTGGCAACGTGAGATGAGAACTATGGTCTTGATATAAGCACGCTATTCTTCGTGTAGTTGGTCAAATGCTATTTCATAACCATGTTGATCTTGATAATATTTCTTTTGCAACCTGACTAATCAGTTTACACTACTTGCTAAGTTGTTTTCTTGTTAATTTCTGTAGATGAGCATATCCCAGGCGAAGATTAGGTTTACGTAGATGTCATTTGTTCCTGCAAAGCAATTACTGTCTTAAACTTACACCTTTAATCTATGTCCAGTCAAATCTAATTAGGGTTTGATAAAATGGTTTTGGGTTCCTTTTCCTTTCTTATGGTATTGGGGGTTCCACGAGCTTAAGTTAGAGATATTGCAATCATGTATTACTTGAAGTCTTGGAAGCGAGAGTTTTTAGATATATTATTTTGATCCCTGCGTTGTGTGCGCTACTGGGATTCTTGCTACCTTTAGTTTTAACTTAAAGGGTTAAGTATCGATGTATCCATTTTTCTACAATTCTTGCCCTAGGTTTGTCTTTTTTTTTTAATTCCTTTGTTATGTTGTGGATGTGCTTCTTCACCATGTCAGAGTAGATGTTTAACTTATTTGTCTCGCTATGATCGCAGGGTCATTCATTTTACCCGAAGTTCTCAGTATTTGCTCTGGGATGATTGCAATATAATTCTATTAGGAAAATTACTTATTGTGTCATTAAGATTGTATTCAAGCAGTAAAAGAAAGAAAATTTATGTGTGTTTGAAACAAATTGAAGGAAAAAAGATCAAAATAAAAGAAAAGAAGTTTCTCTTCTTTACAAAAAAGAGAAAAAAGAAAAAGAAAAAGAAAGAGAAAAAGAAATATATATAAAAAAAAGAGTATAAGATGGAAAAAGAACCTTTGTAATTGATAGGGGGAAACTGAGTGACCGAAAAAAGGAAGAGGAAAAGGAATGTGAAGATTGGGAAAATGAAATTGGTGGATTTAGTTCATTTGATCCAAAAAAAGTATATATCATTGTGAACTTAGGTAAGGATGGATGGAAATGTGAACTAAAGAAGCTTCAACTTCAATACATGAGGGCATGATCACATCAATGGAGACAAATCATTTGCATGCATTGTTAGTTGCAGAGCATTGTTACTTGCAGAGCATTGTTGCTGCTGGGAATGATGGTAATGGTAACTTTTGCTTCATAAATGAGGGCTATTTAACTGTCCTTGTGGGGGTACATAATTTTGCTTTTCTTGTGGTTTTGATATCGATATCTTGGTTCTATTATATCCCTCACAGGTATTGCGTGCTGAAATTTGTCACTGGCAACTATCTATCCTCAGTAGATCAGTTCCTTGGATAGCTTTAGTACAATTTATTTTCCCCCTTCCTTTTAATTTTATTTTGCGAGGCTTTACCTTCTGAGTGCCTTGTACTATAAGAGTTTCTGGCTTCTGTCTATGCTTCAAATCTGCCTCTACGAAGAAGAGATATTGAGTATTCATTTATGGCACTTGGCAGTAGTCCTCCATGTGGTTTAGGACGTCTGGCAGTTACCAATGAATGATTTCCTTGACTTAATGTCAATTAAATCACAACTTGAGGTGGTGGAGAGTTTTTAGTAGTAGTTAGGATAGTTTTATGAATGATGGAGATGGGAGTGAGAATTGCTCATGAAGTTTATCCTATCCGAAAGAGATATGCTTGGTGCAAATGAACTATGTATTTCTAAAAGTGGACACTGGACAGTGCTTGAGGGGAGGTGCTACTAGACATACACTAAAATTAACTCTCATACACATTTATGGATGACAAACAAGTCCCAGGCAATGTTGATTGCTTAAGTTTGTCTTAGTTGCCTCCTTTTGAAGTGGCTAAATAATAGAGTCGGGATTGCTTTTATCATTGACGTGTCTGCAACTAAGTAGATGCTTTTACAAGACCCTTCTGTGGTTGGAATGAGTCATGATGCATACGGAAATATATATATATATATATATATTAATGTTTGAACATGACCTTTGGTTACTGATGTTGGAGTAAATATCCTACACCAATTCCGTAACTTTTCTGTTGCTCTAGGAGCAGTTATGCAGGAAGATTGGTTCATCTTCTTTTCTAGTTTTTAACTTTTAAGATAAAGGATAACATGATCCATCAGGTTAAAGAAGAATCAATCAACGTGTTTGAGCTGTTTATTAATTTTGAGTGCACTAAAATATGCCTACTTTTTGAGTTGGTCCTCTTTGGTATTATACTGTTATCGTTTCCATGCTTTGCTTATGATGTAGTTTGTGTTTGATTAAATAACATTTAAGATGGAATTGAACTTGCAGGTTGATTATGCGTGTACACCTGAAGAAGTACAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTATTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTTGGAGAAAGATGATTTAAGTTTATGTTTCGATTCTATCAAGTATTGGACATTGGCATACTAATTCCACATGTTATTATTGTCGCCGTTATCTGTGCATGTTGTTTGAGTTCTTGTAACCAATTATAAATGGTTTTAATATCATTCTGTTCATCTCAGGTTCAACAAAAGCGTACAAATGTTCCTGGGATGAAGCAGTATTTTCCTCAACGTTACAATCCTTACATGGGATATCGATCCAGGAGGCCTTACGTGCCCCCTTATTTTTACTCACCATATGGAGGATATGGGTAAGTTTCTTGCACCACGCACACATATGTATAGATTTACATCTACTAGAGATTGATACTCAAATTGTTTTCCCCACATCCTGCTGCAGGAAAACACCCCGTTTCCGAAGGCCCATGCGATACATGCCATACTACTAGGAAGGGCCTTGCCCATAATTCAATTACGTTGTGAAACTATATGTATGATTTTACTGTGGTTTAGATCCAATAGAACTATGGATTTGATTATCTTCAGCCTTTTTATTGCAATTACATCAAATGATCTAATGTATGAGATATGGTAATAGTTCATCAGGAACCTATTTAGCATGTTCGATTGTTTAGGAGGTTTCTGGGGGAGATTGATGGTATGCTTGCATATTTCTGCCTCTATTATCTTC

mRNA sequence

GAGTGAAGCAAAGATCCAAGTCTTTGGGCTGAGCTCTCATGGACTTGGGTTGACTCACGCTTGGGACCTTAACTAGCAGTCCTTTGAAACGAGTCTTTATAGCTGATTTATTGTTCATTATAAAATGGTCCACGGTTGGGCTCTATAGATTACCCTATATATCGATCGTATTGCGGAAGCCTGTTCGGACACAATTAGGAAGAACGGAAATGGAGGAAGAGGAACACGAGGTTTACGGCGGAGAGATCCCGGTCGAGGAGGGTGACATTGACATGTCTGCCACTGATGACGACGCCATCAAGGAGCTGGACGAGATGAAGAAGAGATTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAAATGCAAGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCTGGTTCGGCTGTAAGTCAAGAAAGCAAAGAAGAGGCAGATTCGCGATCTGTATTTGTTGGCAACGTTGATTATGCGTGTACACCTGAAGAAGTACAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTATTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGTACAAATGTTCCTGGGATGAAGCAGTATTTTCCTCAACGTTACAATCCTTACATGGGATATCGATCCAGGAGGCCTTACGTGCCCCCTTATTTTTACTCACCATATGGAGGATATGGGAAAACACCCCGTTTCCGAAGGCCCATGCGATACATGCCATACTACTAGGAAGGGCCTTGCCCATAATTCAATTACGTTGTGAAACTATATGTATGATTTTACTGTGGTTTAGATCCAATAGAACTATGGATTTGATTATCTTCAGCCTTTTTATTGCAATTACATCAAATGATCTAATGTATGAGATATGGTAATAGTTCATCAGGAACCTATTTAGCATGTTCGATTGTTTAGGAGGTTTCTGGGGGAGATTGATGGTATGCTTGCATATTTCTGCCTCTATTATCTTC

Coding sequence (CDS)

ATGGAGGAAGAGGAACACGAGGTTTACGGCGGAGAGATCCCGGTCGAGGAGGGTGACATTGACATGTCTGCCACTGATGACGACGCCATCAAGGAGCTGGACGAGATGAAGAAGAGATTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAAATGCAAGCCAAGGTAGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCTGGTTCGGCTGTAAGTCAAGAAAGCAAAGAAGAGGCAGATTCGCGATCTGTATTTGTTGGCAACGTTGATTATGCGTGTACACCTGAAGAAGTACAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTATTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGTACAAATGTTCCTGGGATGAAGCAGTATTTTCCTCAACGTTACAATCCTTACATGGGATATCGATCCAGGAGGCCTTACGTGCCCCCTTATTTTTACTCACCATATGGAGGATATGGGAAAACACCCCGTTTCCGAAGGCCCATGCGATACATGCCATACTACTAG

Protein sequence

MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY*

Homology

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BLAST of CsGy6G029570 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.4e-91
Identity = 175/217 (80.65%), Postives = 187/217 (86.18%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIP------VEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           MEEEEHEVYGGEIP      V + DIDMSA D+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 120
           AKVEKEMGA QDPA  A +QE KEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 121 LTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNP 180
           L DKFG PKGFAYVEFVE EA+QEAL LNE+ELHGRQLKV  KRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 181 YMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPY 212
            MGYR RRP+VPPYFYSPY GYGK PRFRRPMRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPY-GYGKAPRFRRPMRYMPY 216

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BLAST of CsGy6G029570 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.5e-88
Identity = 172/221 (77.83%), Postives = 188/221 (85.07%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIP----------VEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAAL 60
           MEEEEHEVYGGEIP              D+DM+A DDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 120
           REMQAKVEKEMGA QDPA  A +Q  KEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 121 RVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQ 180
           RVTILTDKFG PKGFAYVEFVE EA+QEAL LNE+ELHGRQLKV QKRTNVPG+KQ+  +
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 181 RYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPY 212
           R+NPYMGYR RRP++ PY YSPY GYGK PRFRRPMRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPY-GYGKAPRFRRPMRYMPY 219

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BLAST of CsGy6G029570 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.0e-68
Identity = 147/228 (64.47%), Postives = 172/228 (75.44%), Query Frame = 0


Query: 2   EEEEHEVYGGEIP-VEEGDIDM-----------SATDDDAI------KELDEMKKRLKEM 61
           +E+EHEVYGGEIP  EEG++D            +A  D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHF 121
           EEEA ALREMQAK EK+MGA QDP+G  VS   KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 122 QSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPG 181
           QSCGTVNRVTILTDKFG PKGFAYVEFVE EA+Q +L+LNE+ELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 182 MKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPY 212
           M+Q F  R  P+   R   P VP  FY PY  YG+ PRFRRPMRY PY
Sbjct: 185 MRQ-FRGRGRPFRPMRGFMPGVP--FYPPY-AYGRVPRFRRPMRYRPY 227

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BLAST of CsGy6G029570 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-32
Identity = 90/174 (51.72%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 25  TDDDAI----KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQESKEEA 84
           +D DA+    KEL EMK+R+ EME EAA LR MQ +++ E  A+++          KE  
Sbjct: 2   SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESI 61

Query: 85  DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAIQEA 144
           D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   +  A
Sbjct: 62  DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 121

Query: 145 LLLNETELHGRQLKVQQKRTNVPGMKQYFPQ-----RYNPYMGYRSRRPYVPPY 189
           LLLN + LH R LKV  KRTNVPGM +   +     R     GYR R     PY
Sbjct: 122 LLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166

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BLAST of CsGy6G029570 vs. ExPASy Swiss-Prot
Match: Q28165 (Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 6.0e-32
Identity = 96/207 (46.38%), Postives = 127/207 (61.35%), Query Frame = 0


Query: 2   EEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEM 61
           EEEE      E  + EGD    A +D    EL+ +K R++EMEEEA  L+E+Q +VEK+M
Sbjct: 97  EEEE------ESGLVEGDPGDGAIED---PELEAIKARVREMEEEAEKLKELQNEVEKQM 156

Query: 62  GAVQDPAGSA----VSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 121
             +  P G+A    +S E K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL D
Sbjct: 157 N-MSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD 216

Query: 122 KF-GHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYM 181
           KF GHPKGFAY+EF + E+++ +L L+E+   GRQ+KV  KRTN PG+      R  P  
Sbjct: 217 KFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST--TDRGFPRA 276

Query: 182 GYRSRRPYVPPYFYSPYGGYGKTPRFR 204
            YR+R           Y G+   PR R
Sbjct: 277 RYRARTTNYNSSRSRFYSGFNSRPRGR 291

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BLAST of CsGy6G029570 vs. NCBI nr
Match: XP_004143458.1 (polyadenylate-binding protein 3 isoform X1 [Cucumis sativus] >KGN48735.1 hypothetical protein Csa_003260 [Cucumis sativus])

HSP 1 Score: 417 bits (1073), Expect = 4.64e-147
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
           HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS
Sbjct: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

[Close]

BLAST of CsGy6G029570 vs. NCBI nr
Match: KAA0036316.1 (polyadenylate-binding protein 2-like [Cucumis melo var. makuwa] >TYK12710.1 polyadenylate-binding protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 415 bits (1067), Expect = 3.82e-146
Identity = 210/212 (99.06%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           MEEEEHEVYGGEIPVEEGDIDMSA DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
           HPKGFAYVEFVEAEA+QEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS
Sbjct: 121 HPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

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BLAST of CsGy6G029570 vs. NCBI nr
Match: XP_038882559.1 (polyadenylate-binding protein 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 410 bits (1055), Expect = 2.58e-144
Identity = 207/212 (97.64%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGDIDMSA DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MDEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
           HPKGFAYVEFVEAEA+QEALLLNE+ELHGRQLKVQQKRTNVPGMKQYFPQRY+PYMGYRS
Sbjct: 121 HPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQYFPQRYSPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

[Close]

BLAST of CsGy6G029570 vs. NCBI nr
Match: KAG7026854.1 (Polyadenylate-binding protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394 bits (1012), Expect = 8.94e-138
Identity = 198/212 (93.40%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MDEEEHEVYGGEIPVEEGDVDMNAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
            PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQKRTN+PGMKQYFPQRYNPYMGYRS
Sbjct: 121 QPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYG YGKTPR+RRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYG-YGKTPRYRRPMRYMPYY 211

[Close]

BLAST of CsGy6G029570 vs. NCBI nr
Match: XP_022962974.1 (polyadenylate-binding protein 3-like [Cucurbita moschata] >XP_023518371.1 polyadenylate-binding protein 3-like [Cucurbita pepo subsp. pepo] >XP_023522686.1 polyadenylate-binding protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394 bits (1012), Expect = 8.94e-138
Identity = 198/212 (93.40%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
            PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQKRTN+PGMKQYFPQRYNPYMGYRS
Sbjct: 121 QPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYG YGKTPR+RRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYG-YGKTPRYRRPMRYMPYY 211

[Close]

BLAST of CsGy6G029570 vs. ExPASy TrEMBL
Match: A0A0A0KG83 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499790 PE=4 SV=1)

HSP 1 Score: 417 bits (1073), Expect = 2.25e-147
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
           HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS
Sbjct: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

[Close]

BLAST of CsGy6G029570 vs. ExPASy TrEMBL
Match: A0A5A7T2C2 (Polyadenylate-binding protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002980 PE=4 SV=1)

HSP 1 Score: 415 bits (1067), Expect = 1.85e-146
Identity = 210/212 (99.06%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           MEEEEHEVYGGEIPVEEGDIDMSA DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
           HPKGFAYVEFVEAEA+QEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS
Sbjct: 121 HPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212

[Close]

BLAST of CsGy6G029570 vs. ExPASy TrEMBL
Match: A0A6J1HIK8 (polyadenylate-binding protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111463324 PE=4 SV=1)

HSP 1 Score: 394 bits (1012), Expect = 4.33e-138
Identity = 198/212 (93.40%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DM+A DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAG+ VSQESKEE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGAVVSQESKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
            PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQKRTN+PGMKQYFPQRYNPYMGYRS
Sbjct: 121 QPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYG YGKTPR+RRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYG-YGKTPRYRRPMRYMPYY 211

[Close]

BLAST of CsGy6G029570 vs. ExPASy TrEMBL
Match: A0A6J1KVH8 (polyadenylate-binding protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111496810 PE=4 SV=1)

HSP 1 Score: 394 bits (1011), Expect = 6.15e-138
Identity = 198/212 (93.40%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           M+EEEHEVYGGEIPVEEGD+DMSA DD+AIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MDEEEHEVYGGEIPVEEGDVDMSAADDEAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDP G+AVSQESKEE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPTGAAVSQESKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
            PKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQKRTN+PGMKQYFPQRYNPYMGYRS
Sbjct: 121 QPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNIPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYG YGKTPR+RRPMRYMPYY
Sbjct: 181 RRPYVPPYFYSPYG-YGKTPRYRRPMRYMPYY 211

[Close]

BLAST of CsGy6G029570 vs. ExPASy TrEMBL
Match: A0A6J1BTY4 (polyadenylate-binding protein 3-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005528 PE=4 SV=1)

HSP 1 Score: 392 bits (1008), Expect = 1.76e-137
Identity = 199/212 (93.87%), Postives = 206/212 (97.17%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
           MEEEEHEVYGGEIPVEE D+DMSA DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1   MEEEEHEVYGGEIPVEEADVDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61  MGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120
           MGAVQDPAG+AVSQE+KEE DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG
Sbjct: 61  MGAVQDPAGAAVSQENKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 120

Query: 121 HPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180
           HPKGFAYVEF+EAEA+QEALLLNE+ELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS
Sbjct: 121 HPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRS 180

Query: 181 RRPYVPPYFYSPYGGYGKTPRFRRPMRYMPYY 212
           RRPYVPPYFYSPYG YGK PRFRR M+YMPYY
Sbjct: 181 RRPYVPPYFYSPYG-YGKAPRFRRSMQYMPYY 211

[Close]

BLAST of CsGy6G029570 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 335.9 bits (860), Expect = 2.4e-92
Identity = 175/217 (80.65%), Postives = 187/217 (86.18%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIP------VEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           MEEEEHEVYGGEIP      V + DIDMSA D+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 120
           AKVEKEMGA QDPA  A +QE KEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 121 LTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNP 180
           L DKFG PKGFAYVEFVE EA+QEAL LNE+ELHGRQLKV  KRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 181 YMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPY 212
            MGYR RRP+VPPYFYSPY GYGK PRFRRPMRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPY-GYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CsGy6G029570 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-89
Identity = 172/221 (77.83%), Postives = 188/221 (85.07%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIP----------VEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAAL 60
           MEEEEHEVYGGEIP              D+DM+A DDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 120
           REMQAKVEKEMGA QDPA  A +Q  KEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 121 RVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQ 180
           RVTILTDKFG PKGFAYVEFVE EA+QEAL LNE+ELHGRQLKV QKRTNVPG+KQ+  +
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 181 RYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPY 212
           R+NPYMGYR RRP++ PY YSPY GYGK PRFRRPMRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPY-GYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CsGy6G029570 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 307.4 bits (786), Expect = 9.1e-84
Identity = 162/203 (79.80%), Postives = 174/203 (85.71%), Query Frame = 0


Query: 1   MEEEEHEVYGGEIP------VEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQ 60
           MEEEEHEVYGGEIP      V + DIDMSA D+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 120
           AKVEKEMGA QDPA  A +QE KEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 121 LTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNP 180
           L DKFG PKGFAYVEFVE EA+QEAL LNE+ELHGRQLKV  KRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 181 YMGYRSRRPYVPPYFYSPYGGYG 198
            MGYR RRP+VPPYFYSPY GYG
Sbjct: 181 SMGYRFRRPFVPPYFYSPY-GYG 202

[Close]

BLAST of CsGy6G029570 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 259.2 bits (661), Expect = 2.8e-69
Identity = 147/228 (64.47%), Postives = 172/228 (75.44%), Query Frame = 0


Query: 2   EEEEHEVYGGEIP-VEEGDIDM-----------SATDDDAI------KELDEMKKRLKEM 61
           +E+EHEVYGGEIP  EEG++D            +A  D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHF 121
           EEEA ALREMQAK EK+MGA QDP+G  VS   KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 122 QSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPG 181
           QSCGTVNRVTILTDKFG PKGFAYVEFVE EA+Q +L+LNE+ELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 182 MKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYGKTPRFRRPMRYMPY 212
           M+Q F  R  P+   R   P VP  FY PY  YG+ PRFRRPMRY PY
Sbjct: 185 MRQ-FRGRGRPFRPMRGFMPGVP--FYPPY-AYGRVPRFRRPMRYRPY 227

[Close]

BLAST of CsGy6G029570 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 238.4 bits (607), Expect = 5.2e-63
Identity = 145/265 (54.72%), Postives = 170/265 (64.15%), Query Frame = 0


Query: 2   EEEEHEVYGGEIP-VEEGDIDM-----------SATDDDAI------KELDEMKKRLKEM 61
           +E+EHEVYGGEIP  EEG++D            +A  D+ +      ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQ-------------------------------------D 121
           EEEA ALREMQAK EK+MGA Q                                     +
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 122 PAGSAVSQESKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFA 181
              S VS   KEE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFA
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 184

Query: 182 YVEFVEAEAIQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVP 212
           YVEFVE EA+Q +L+LNE+ELHGRQ+KV  KRTNVPGM+Q F  R  P+   R   P VP
Sbjct: 185 YVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQ-FRGRGRPFRPMRGFMPGVP 244

The following BLAST results are available for this feature:

BLAST of CsGy6G029570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX90	3.4e-91	80.65	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q9FJN9	3.5e-88	77.83	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q93VI4	4.0e-68	64.47	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	2.1e-32	51.72	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q28165	6.0e-32	46.38	Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3	[more]

BLAST of CsGy6G029570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143458.1	4.64e-147	100.00	polyadenylate-binding protein 3 isoform X1 [Cucumis sativus] >KGN48735.1 hypothe...	[more]
KAA0036316.1	3.82e-146	99.06	polyadenylate-binding protein 2-like [Cucumis melo var. makuwa] >TYK12710.1 poly...	[more]
XP_038882559.1	2.58e-144	97.64	polyadenylate-binding protein 3-like isoform X2 [Benincasa hispida]	[more]
KAG7026854.1	8.94e-138	93.40	Polyadenylate-binding protein 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022962974.1	8.94e-138	93.40	polyadenylate-binding protein 3-like [Cucurbita moschata] >XP_023518371.1 polyad...	[more]

BLAST of CsGy6G029570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG83	2.25e-147	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499790 PE=4 SV...	[more]
A0A5A7T2C2	1.85e-146	99.06	Polyadenylate-binding protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1HIK8	4.33e-138	93.40	polyadenylate-binding protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114633...	[more]
A0A6J1KVH8	6.15e-138	93.40	polyadenylate-binding protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111496810...	[more]
A0A6J1BTY4	1.76e-137	93.87	polyadenylate-binding protein 3-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CsGy6G029570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10350.1	2.4e-92	80.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	2.5e-89	77.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	9.1e-84	79.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.1	2.8e-69	64.47	polyadenylate-binding protein 1	[more]
AT5G51120.2	5.2e-63	54.72	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 1..210
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 1..210
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 84..154 e-value: 1.09436E-47 score: 149.364
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 84..155 e-value: 1.4E-21 score: 87.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 85..153 e-value: 1.2E-16 score: 60.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 83..159 score: 17.080015
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 21..156 e-value: 1.7E-28 score: 101.4
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 75..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G029570.2	CsGy6G029570.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding