Homology
BLAST of CsGy6G028200 vs. ExPASy Swiss-Prot
Match:
Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)
HSP 1 Score: 877.9 bits (2267), Expect = 6.4e-254
Identity = 430/573 (75.04%), Postives = 476/573 (83.07%), Query Frame = 0
Query: 4 SSSFVKL--SSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKNN 63
SSS +++ SS SFSSS++ F K I NLR+ A Q LP+++
Sbjct: 9 SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68
Query: 64 PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCLP 123
PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDK+LAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69 PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128
Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188
Query: 184 RHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASL 243
RH+++GHSRL+FLGQYVLELAL E+FLQRYPRESPGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248
Query: 244 QNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECE 303
QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308
Query: 304 PRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 363
PR RRQLEDVDYVSVEFE K++GWQD+ +YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368
Query: 364 DYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLE 423
D+DS+P+VMQ LGYPL + D+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLE
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 428
Query: 424 YLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLMKH 483
Y+GQKIQ DI MAERLLMKH
Sbjct: 429 YVGQKIQ-----------------------------------------DIAMAERLLMKH 488
Query: 484 LDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQ 543
LDAPG+WLQ KHRRLLMNKFCGRYLRE+ LH IIYSE+V D YE+NRRLRNPATTAVQQ
Sbjct: 489 LDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQ 537
Query: 544 ALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 575
A+HGL+Y +YGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 549 AIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537
BLAST of CsGy6G028200 vs. ExPASy Swiss-Prot
Match:
Q8S1Z0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)
HSP 1 Score: 807.4 bits (2084), Expect = 1.1e-232
Identity = 389/546 (71.25%), Postives = 444/546 (81.32%), Query Frame = 0
Query: 44 LRVFAVAVD---------PQQELPKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLD 103
+RV AVA D P N+P RLL+ELAERK+A SPKKK PPRRFIL+PPLD
Sbjct: 29 VRVLAVAADHTPPPPPSPSSPPEPANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLD 88
Query: 104 DKRLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSY 163
D+RL +RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMDEYLLEAKQALGYPL PS++
Sbjct: 89 DERLTQRFLSSPQLSLKALPLLSSCLPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETL 148
Query: 164 GDDN----PAKQFDTLLYLAFQH--PSCERTKARHIRSGHSRLFFLGQYVLELALAEYFL 223
GD + PA+ FD LLYLAFQH SCERT+ RH+RSGHSRL+FLGQYVLELA E+FL
Sbjct: 149 GDGDDDGCPARHFDVLLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFL 208
Query: 224 QRYPRESPGPMRERVFALIGKRNLPKWIKAASLQNLIFPYDDMDKIIRKDREPPVKSVFW 283
QRYPRESPGPMRERVFALIGKR +PKWIKAASL NL+FPYDD+DK+IRKDREPP K+VFW
Sbjct: 209 QRYPRESPGPMRERVFALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFW 268
Query: 284 ALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECEPRLRRQLEDVDYVSVEFEDKRIGWQDM 343
ALFGAIYLCFGMPEVYRVLFE FGMDP+ + C+P+LRRQLEDVDYVSVEFE +++ WQD+
Sbjct: 269 ALFGAIYLCFGMPEVYRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDV 328
Query: 344 VSYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPLPVTDKIPDITE 403
+Y+PP DALFAHPRLFRACVPPGMHRFRGNIWD+D+RP+VM LGYPLP+ D+IP+ITE
Sbjct: 329 AAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITE 388
Query: 404 ARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQVRPFLTFIREEVLLSLYQNP 463
ARNIELGLGLQLCFLHPSKHKFEHPRFC ERLEY+GQKIQ
Sbjct: 389 ARNIELGLGLQLCFLHPSKHKFEHPRFCLERLEYVGQKIQ-------------------- 448
Query: 464 ILDVWIKQLTYGGRSYCVLFKDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRE 523
D+VMAERLLMKHLDAPGRWL KHRRLLMNK+CGRYLR+
Sbjct: 449 ---------------------DLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYCGRYLRD 508
Query: 524 RYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQ 575
++LH IIY E VQD +E+NRRLRNP+TTAVQQA+HGL+Y VYGKPDVRR+MFEVFDFEQ
Sbjct: 509 KHLHHYIIYGESVQDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFEVFDFEQ 533
BLAST of CsGy6G028200 vs. ExPASy Swiss-Prot
Match:
A6YSL1 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)
HSP 1 Score: 806.2 bits (2081), Expect = 2.4e-232
Identity = 393/564 (69.68%), Postives = 451/564 (79.96%), Query Frame = 0
Query: 21 SLTPFIVKIHPNHPIFPNPSSANLRVFAVAVD------PQQELPKNNPQRLLKELAERKR 80
+LTP +H SS +RV AVA D P E P N+P RLL+ELA+RK+
Sbjct: 12 TLTPLPFSLH--------SSSRRVRVLAVAADQTPPPAPPSE-PANSPSRLLRELAQRKK 71
Query: 81 ATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMD 140
A SPKKK PPRRFIL+PPLDD+RL RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMD
Sbjct: 72 AVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMD 131
Query: 141 EYLLEAKQALGYPLEPSDSY--GDDNPAKQFDTLLYLAFQH--PSCERTKARHIRSGHSR 200
EYLLEAKQALGYPL PS++ GDD PA+ FD L YLAFQH PS ERT+ RH+R+GHSR
Sbjct: 132 EYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSR 191
Query: 201 LFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASLQNLIFPYDD 260
L+FLGQYVLELA E+FLQRYPRESPGPMRERVFALIGK+ LP+W+KAASL NL+FPYDD
Sbjct: 192 LWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDD 251
Query: 261 MDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECEPRLRRQLED 320
+DK+IRKDREPP K+VFWA+FGAIYLCFGMPEVYRVLFE FGMDPD + C+P+LRRQLED
Sbjct: 252 LDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLED 311
Query: 321 VDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVM 380
VDYVSVEFE +++ WQD+ +Y+PP DALFAHPRLFRACVPPGMHRFRGNIWD+DSRP+VM
Sbjct: 312 VDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPKVM 371
Query: 381 QALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQVR 440
LGYPLP+ D+IP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY+GQKIQ
Sbjct: 372 TTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQ-- 431
Query: 441 PFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLMKHLDAPGRWLQ 500
D+VMAERLLMKHLDAPGRWL
Sbjct: 432 ---------------------------------------DLVMAERLLMKHLDAPGRWLA 491
Query: 501 VKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVV 560
KHRR LMNK+CGRYLR+++L IIY E VQD +E+NRRLRNP+TT+VQQALHGL+Y V
Sbjct: 492 EKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPSTTSVQQALHGLAYCV 525
Query: 561 YGKPDVRRIMFEVFDFEQIQPKAV 575
YGKPDVRR+MFEVFDFEQ+QPKAV
Sbjct: 552 YGKPDVRRLMFEVFDFEQVQPKAV 525
BLAST of CsGy6G028200 vs. ExPASy Swiss-Prot
Match:
Q5L0Q3 (Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 1.0e-09
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 0
Query: 164 DTLLYLAFQHPSCERTKARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERV 223
+ LL AF H S R + + RL FLG VLEL +++Y Q++P S G + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91
Query: 224 FALIGKRNLPKWIKAASLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEV 283
A++ + +L K+ A S L+ + + R + VF A GA+YL GM V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151
Query: 284 YRVL 288
R L
Sbjct: 152 IRFL 155
BLAST of CsGy6G028200 vs. ExPASy Swiss-Prot
Match:
A4IM67 (Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=rnc PE=3 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 1.3e-09
Identity = 41/126 (32.54%), Postives = 60/126 (47.62%), Query Frame = 0
Query: 162 QFDTLLYLAFQHPSCERTKARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRE 221
Q + LL AF H S R + RL FLG VLEL +++Y Q++P S G + +
Sbjct: 30 QNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTK 89
Query: 222 RVFALIGKRNLPKWIKAASLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMP 281
A++ + +L K+ A S L+ + + R + VF A GA+YL GM
Sbjct: 90 LRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMD 149
Query: 282 EVYRVL 288
V R L
Sbjct: 150 VVLRFL 155
BLAST of CsGy6G028200 vs. NCBI nr
Match:
XP_004141878.1 (ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucumis sativus] >KGN48593.1 hypothetical protein Csa_003755 [Cucumis sativus])
HSP 1 Score: 1071 bits (2769), Expect = 0.0
Identity = 533/574 (92.86%), Postives = 533/574 (92.86%), Query Frame = 0
Query: 1 MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60
MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN
Sbjct: 1 MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60
Query: 61 NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120
NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61 NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120
Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180
PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180
Query: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240
ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS
Sbjct: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240
Query: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300
LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC
Sbjct: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300
Query: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360
EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360
Query: 361 WDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERL 420
WDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERL
Sbjct: 361 WDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERL 420
Query: 421 EYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLMK 480
EYLGQKIQ DIVMAERLLMK
Sbjct: 421 EYLGQKIQ-----------------------------------------DIVMAERLLMK 480
Query: 481 HLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQ 540
HLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQ
Sbjct: 481 HLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQ 533
Query: 541 QALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV
Sbjct: 541 QALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 533
BLAST of CsGy6G028200 vs. NCBI nr
Match:
XP_038883471.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispida])
HSP 1 Score: 1050 bits (2715), Expect = 0.0
Identity = 521/575 (90.61%), Postives = 530/575 (92.17%), Query Frame = 0
Query: 1 MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
MELSSSFVKLSSPS NYSFSSSLTPFIVKIHPNHPIFPNPSSANLR+FAVAVDPQQELPK
Sbjct: 1 MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAVDPQQELPK 60
Query: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
NNPQRLLKELAERKRATSPKKKVPP+RFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61 NNPQRLLKELAERKRATSPKKKVPPKRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
CEPRLRRQLEDVDYVSVEFEDKRI WQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
Query: 421 LEYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLM 480
LEYLGQKIQ DIVMAERLLM
Sbjct: 421 LEYLGQKIQ-----------------------------------------DIVMAERLLM 480
Query: 481 KHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAV 540
KHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEKVQDAYENNRRLRNPATTAV
Sbjct: 481 KHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAV 534
Query: 541 QQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 QQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534
BLAST of CsGy6G028200 vs. NCBI nr
Match:
XP_008440359.1 (PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucumis melo])
HSP 1 Score: 1043 bits (2698), Expect = 0.0
Identity = 517/575 (89.91%), Postives = 527/575 (91.65%), Query Frame = 0
Query: 1 MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
MELSSSFVKLSSPS NYSFSSSLTPFIVKIHPNHPIFPNPSS NLR+FAVAVDPQQELPK
Sbjct: 1 MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60
Query: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
KARHIRSGHSRL FLGQYV+ELALAEYFL RYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
CEPRLRRQLEDVDYVSVEFEDKRI WQDM+SYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
IWDYDSRPQVMQALGYPLPV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
Query: 421 LEYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLM 480
LEYLGQKIQ DIVMAERLLM
Sbjct: 421 LEYLGQKIQ-----------------------------------------DIVMAERLLM 480
Query: 481 KHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAV 540
KHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEKVQDAYENNRRLRNPATTAV
Sbjct: 481 KHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAV 534
Query: 541 QQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 QQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534
BLAST of CsGy6G028200 vs. NCBI nr
Match:
XP_022133289.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charantia])
HSP 1 Score: 1023 bits (2644), Expect = 0.0
Identity = 505/575 (87.83%), Postives = 525/575 (91.30%), Query Frame = 0
Query: 1 MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
MELSSSFV+L+SP+ NYSFSSSLTPF KI+PN+P FPNP+S NLR+FAVAVDPQQELPK
Sbjct: 1 MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60
Query: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61 NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180
Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
KARHIRSGHSRL FLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
IWDYDSRPQVMQALGYP+PV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
Query: 421 LEYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLM 480
LEYLGQKIQ DIVMAERLLM
Sbjct: 421 LEYLGQKIQ-----------------------------------------DIVMAERLLM 480
Query: 481 KHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAV 540
KHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEKVQDAYENNRRLRNPATTAV
Sbjct: 481 KHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAV 534
Query: 541 QQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QQALHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 QQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534
BLAST of CsGy6G028200 vs. NCBI nr
Match:
XP_023543359.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 1020 bits (2637), Expect = 0.0
Identity = 502/575 (87.30%), Postives = 523/575 (90.96%), Query Frame = 0
Query: 1 MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
MELSS FVKLSSP+ N+SFSSSLTPF+VKIHPN+P NPSS +LR+FAVAVDPQQELPK
Sbjct: 1 MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPQQELPK 60
Query: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61 NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
SLQNLIFPYDDMDK++RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
IWDYDSRPQVMQALGYP+PVTDKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
Query: 421 LEYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLM 480
LEYLGQKIQ DIVMAERLLM
Sbjct: 421 LEYLGQKIQ-----------------------------------------DIVMAERLLM 480
Query: 481 KHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAV 540
KHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLI+YSE+VQDAYENNRRLRNPATTAV
Sbjct: 481 KHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAYENNRRLRNPATTAV 534
Query: 541 QQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QQALHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 QQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534
BLAST of CsGy6G028200 vs. ExPASy TrEMBL
Match:
A0A0A0KGG7 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 PE=4 SV=1)
HSP 1 Score: 1071 bits (2769), Expect = 0.0
Identity = 533/574 (92.86%), Postives = 533/574 (92.86%), Query Frame = 0
Query: 1 MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60
MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN
Sbjct: 1 MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60
Query: 61 NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120
NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61 NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120
Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180
PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180
Query: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240
ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS
Sbjct: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240
Query: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300
LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC
Sbjct: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300
Query: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360
EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360
Query: 361 WDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERL 420
WDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERL
Sbjct: 361 WDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERL 420
Query: 421 EYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLMK 480
EYLGQKIQ DIVMAERLLMK
Sbjct: 421 EYLGQKIQ-----------------------------------------DIVMAERLLMK 480
Query: 481 HLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQ 540
HLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQ
Sbjct: 481 HLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQ 533
Query: 541 QALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV
Sbjct: 541 QALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 533
BLAST of CsGy6G028200 vs. ExPASy TrEMBL
Match:
A0A1S3B1J9 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484834 PE=4 SV=1)
HSP 1 Score: 1043 bits (2698), Expect = 0.0
Identity = 517/575 (89.91%), Postives = 527/575 (91.65%), Query Frame = 0
Query: 1 MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
MELSSSFVKLSSPS NYSFSSSLTPFIVKIHPNHPIFPNPSS NLR+FAVAVDPQQELPK
Sbjct: 1 MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60
Query: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
KARHIRSGHSRL FLGQYV+ELALAEYFL RYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
CEPRLRRQLEDVDYVSVEFEDKRI WQDM+SYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
IWDYDSRPQVMQALGYPLPV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
Query: 421 LEYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLM 480
LEYLGQKIQ DIVMAERLLM
Sbjct: 421 LEYLGQKIQ-----------------------------------------DIVMAERLLM 480
Query: 481 KHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAV 540
KHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEKVQDAYENNRRLRNPATTAV
Sbjct: 481 KHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAV 534
Query: 541 QQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 QQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534
BLAST of CsGy6G028200 vs. ExPASy TrEMBL
Match:
A0A6J1BVK6 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005910 PE=4 SV=1)
HSP 1 Score: 1023 bits (2644), Expect = 0.0
Identity = 505/575 (87.83%), Postives = 525/575 (91.30%), Query Frame = 0
Query: 1 MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
MELSSSFV+L+SP+ NYSFSSSLTPF KI+PN+P FPNP+S NLR+FAVAVDPQQELPK
Sbjct: 1 MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60
Query: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61 NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180
Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
KARHIRSGHSRL FLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
IWDYDSRPQVMQALGYP+PV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
Query: 421 LEYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLM 480
LEYLGQKIQ DIVMAERLLM
Sbjct: 421 LEYLGQKIQ-----------------------------------------DIVMAERLLM 480
Query: 481 KHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAV 540
KHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEKVQDAYENNRRLRNPATTAV
Sbjct: 481 KHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAV 534
Query: 541 QQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QQALHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 QQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534
BLAST of CsGy6G028200 vs. ExPASy TrEMBL
Match:
A0A6J1GEC3 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453180 PE=4 SV=1)
HSP 1 Score: 1019 bits (2636), Expect = 0.0
Identity = 502/575 (87.30%), Postives = 522/575 (90.78%), Query Frame = 0
Query: 1 MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
MELSS FVKLSSP+ N+SFSSSLTPF+VKIHPN+P NPSS LR+FAVAVDPQQELPK
Sbjct: 1 MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60
Query: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61 NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
Query: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
Query: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
SLQNLIFPYDDMDK++RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
Query: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
CEPRLRRQLEDVDYVSVEFEDK+I WQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
Query: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
IWDYDSRPQVMQALGYP+PVTDKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
Query: 421 LEYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLM 480
LEYLGQKIQ DIVMAERLLM
Sbjct: 421 LEYLGQKIQ-----------------------------------------DIVMAERLLM 480
Query: 481 KHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAV 540
KHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLI+YSE+VQDAYENNRRLRNPATTAV
Sbjct: 481 KHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAYENNRRLRNPATTAV 534
Query: 541 QQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QQALHGLSY VYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 QQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534
BLAST of CsGy6G028200 vs. ExPASy TrEMBL
Match:
A0A6J1HF14 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111463577 PE=4 SV=1)
HSP 1 Score: 1015 bits (2624), Expect = 0.0
Identity = 497/574 (86.59%), Postives = 522/574 (90.94%), Query Frame = 0
Query: 1 MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60
MELSSSFVKLSS +NYSFSSS TPFIVKIHPN P FPNP+S NLR+FAVAVDPQQELPKN
Sbjct: 1 MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
Query: 61 NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120
NPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDK+LAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61 NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180
PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNP+KQFDT LYLAFQHPSCERTK
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPSKQFDTXLYLAFQHPSCERTK 180
Query: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240
ARHIRSGHSRL FLGQYVLELALAEYFLQRYP+ESPGPMRERVFALIGKRNLPKWIKAAS
Sbjct: 181 ARHIRSGHSRLLFLGQYVLELALAEYFLQRYPKESPGPMRERVFALIGKRNLPKWIKAAS 240
Query: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300
LQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFG+PEVYRVLFEVFGMDPD++EC
Sbjct: 241 LQNLIFPYDDMDKLIRKDREPPVKSVFWALFGAIYLCFGIPEVYRVLFEVFGMDPDSEEC 300
Query: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360
EPRLRRQLEDVDYVSVEFEDK+I WQDM++YKPPEDALFAHPRLFRACVPPGMHRFRGNI
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKKISWQDMITYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360
Query: 361 WDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERL 420
WDYDSRPQVM+ALGYP+PVTDKIPDITEARNIELGLGLQLCFLHPSK+KFEHPRFCYERL
Sbjct: 361 WDYDSRPQVMKALGYPVPVTDKIPDITEARNIELGLGLQLCFLHPSKYKFEHPRFCYERL 420
Query: 421 EYLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLMK 480
EYLGQKIQ DIVMAERLLMK
Sbjct: 421 EYLGQKIQ-----------------------------------------DIVMAERLLMK 480
Query: 481 HLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQ 540
HLDAPG+WLQ KHRRL+MNKFCGRYLRE+YLHKLI YSEKV+DAYENNRRL+NPATTAVQ
Sbjct: 481 HLDAPGKWLQEKHRRLVMNKFCGRYLREKYLHKLIGYSEKVRDAYENNRRLQNPATTAVQ 533
Query: 541 QALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 574
QALHGLSY V+GKPDVRR+MFEVFDFEQ+QPKAV
Sbjct: 541 QALHGLSYAVHGKPDVRRLMFEVFDFEQLQPKAV 533
BLAST of CsGy6G028200 vs. TAIR 10
Match:
AT4G37510.1 (Ribonuclease III family protein )
HSP 1 Score: 877.9 bits (2267), Expect = 4.6e-255
Identity = 430/573 (75.04%), Postives = 476/573 (83.07%), Query Frame = 0
Query: 4 SSSFVKL--SSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKNN 63
SSS +++ SS SFSSS++ F K I NLR+ A Q LP+++
Sbjct: 9 SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68
Query: 64 PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCLP 123
PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDK+LAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69 PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128
Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188
Query: 184 RHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASL 243
RH+++GHSRL+FLGQYVLELAL E+FLQRYPRESPGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248
Query: 244 QNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKECE 303
QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308
Query: 304 PRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 363
PR RRQLEDVDYVSVEFE K++GWQD+ +YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368
Query: 364 DYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLE 423
D+DS+P+VMQ LGYPL + D+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLE
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 428
Query: 424 YLGQKIQVRPFLTFIREEVLLSLYQNPILDVWIKQLTYGGRSYCVLFKDIVMAERLLMKH 483
Y+GQKIQ DI MAERLLMKH
Sbjct: 429 YVGQKIQ-----------------------------------------DIAMAERLLMKH 488
Query: 484 LDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQ 543
LDAPG+WLQ KHRRLLMNKFCGRYLRE+ LH IIYSE+V D YE+NRRLRNPATTAVQQ
Sbjct: 489 LDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQ 537
Query: 544 ALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 575
A+HGL+Y +YGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 549 AIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537
BLAST of CsGy6G028200 vs. TAIR 10
Match:
AT2G48121.2 (LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )
HSP 1 Score: 139.8 bits (351), Expect = 6.8e-33
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0
Query: 498 MNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVR 557
MNKFCGRYLRE+ LH IIYSE+V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVR
Sbjct: 1 MNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVR 60
Query: 558 RIMFEVFDFEQIQPKAV 575
R+MFEVFDFEQIQPKAV
Sbjct: 61 RLMFEVFDFEQIQPKAV 77
BLAST of CsGy6G028200 vs. TAIR 10
Match:
AT2G48121.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )
HSP 1 Score: 105.1 bits (261), Expect = 1.9e-22
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 0
Query: 518 SEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 575
+E+V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 19 TEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 75
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SZV0 | 6.4e-254 | 75.04 | Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th... | [more] |
Q8S1Z0 | 1.1e-232 | 71.25 | Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s... | [more] |
A6YSL1 | 2.4e-232 | 69.68 | Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45... | [more] |
Q5L0Q3 | 1.0e-09 | 32.26 | Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3... | [more] |
A4IM67 | 1.3e-09 | 32.54 | Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=r... | [more] |
Match Name | E-value | Identity | Description | |
XP_004141878.1 | 0.0 | 92.86 | ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucum... | [more] |
XP_038883471.1 | 0.0 | 90.61 | ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispid... | [more] |
XP_008440359.1 | 0.0 | 89.91 | PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucum... | [more] |
XP_022133289.1 | 0.0 | 87.83 | ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charan... | [more] |
XP_023543359.1 | 0.0 | 87.30 | ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita p... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KGG7 | 0.0 | 92.86 | RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 P... | [more] |
A0A1S3B1J9 | 0.0 | 89.91 | ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo O... | [more] |
A0A6J1BVK6 | 0.0 | 87.83 | ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica char... | [more] |
A0A6J1GEC3 | 0.0 | 87.30 | ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita... | [more] |
A0A6J1HF14 | 0.0 | 86.59 | LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas... | [more] |
Match Name | E-value | Identity | Description | |
AT4G37510.1 | 4.6e-255 | 75.04 | Ribonuclease III family protein | [more] |
AT2G48121.2 | 6.8e-33 | 83.12 | LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonucle... | [more] |
AT2G48121.1 | 1.9e-22 | 82.46 | BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAI... | [more] |