CsGy6G026495 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G026495
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 26060801 .. 26061046 (-)
RNA-Seq Expression	CsGy6G026495
Synteny	CsGy6G026495

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAACAATGGAATTAATAAGAAACAAGAAAAGAACAACAACAATAATAATAGCAATTCATCATGGTCACCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACGCAGATCGACAATGTCCTCCACGGCCCCAAAACGACAGCTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA

mRNA sequence

ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAACAATGGAATTAATAAGAAACAAGAAAAGAACAACAACAATAATAATAGCAATTCATCATGGTCACCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACGCAGATCGACAATGTCCTCCACGGCCCCAAAACGACAGCTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Coding sequence (CDS)

ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAACAATGGAATTAATAAGAAACAAGAAAAGAACAACAACAATAATAATAGCAATTCATCATGGTCACCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACGCAGATCGACAATGTCCTCCACGGCCCCAAAACGACAGCTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Protein sequence

MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNVLHGPKTTARLLVFKQICPDQN*

Homology

[Close]

BLAST of CsGy6G026495 vs. NCBI nr
Match: KGN48424.1 (hypothetical protein Csa_003981 [Cucumis sativus])

HSP 1 Score: 160 bits (404), Expect = 2.81e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV 60
          MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV
Sbjct: 1  MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV 60

Query: 61 LHGPKTTARLLVFKQICPDQN 81
          LHGPKTTARLLVFKQICPDQN
Sbjct: 61 LHGPKTTARLLVFKQICPDQN 81

[Close]

BLAST of CsGy6G026495 vs. ExPASy TrEMBL
Match: A0A0A0KHZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 1.36e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV 60
          MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV
Sbjct: 1  MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNV 60

Query: 61 LHGPKTTARLLVFKQICPDQN 81
          LHGPKTTARLLVFKQICPDQN
Sbjct: 61 LHGPKTTARLLVFKQICPDQN 81

The following BLAST results are available for this feature:

BLAST of CsGy6G026495 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G026495 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48424.1	2.81e-49	100.00	hypothetical protein Csa_003981 [Cucumis sativus]	[more]

BLAST of CsGy6G026495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHZ5	1.36e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1	[more]

BLAST of CsGy6G026495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G026495.1	CsGy6G026495.1	mRNA