CsGy6G024540 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTAGCTTTGGCCTTTCTTTATGTATATCTATATCTATATATCTATATCTATATATATGTATGTGTGTGTGTTTATATATAGAGAGATAGATAGATAGATATTGATGTTGTTTGTGGTCCATTTGGTTTGAACAAAACAGAGAGGTTGTTGTGAGAAAAGAAATCCATATTCCAAATACATATGGAATGGAATAATGGAAATATAAGTTTTAGTTCTAACTTTGTTTCTCCACCACCACAATCTTCTTCTTCCTCTGCATTGCTTTACAACTACAGCTTCAACTGCAACTACAATTTGGATCACTTTCCTGGTAAACCAGACTCATAAAATGAAACTTACCTTTTACTGTTCAATGTGTATGTATTGTTTGTTCTTTTTTTCTTTCTTTTTCTTTTAGACACCACTTTTTGATGGATCATTAAACCTAAACCTTCTCCCTAGAAACCCTATTTTGTCAAAATTTTGCCAAATAGGGTTTTAGGGTTTTGGGTTTGTTTTCTCTTTTTCTCTAAACATTACTCTATCTATGGGGGGCTTGTGGAGAGGTATTAGCATTCCAGACAGGAGTTTGAACGCAAAATTTGTTTTCCTCTTAAATACGTTTTCAAATCACAACGAATTCAACTCATAATGAAAATTTTTGGTTTGATTCGATATCCATTTTGGTTTTCCTTTTTTTTTGAAGTTATGTATTGTCACTAATTTGTGGTGGTATGCTATTCACATTCTGAAAAGCATATCTTAATTCTAAACCAAATTGCAAAAAAGAAAAAAAAAACAAAAACAAACAAATTCAAGTTTTTAATACCTTGTTTGATAACTTTTGGATTTTATGATTTCTTTGCAATATTTTTTTATGTAAAATTTGAACTGTAAACCTAATTTAAAATATGAAGTATATCTTTTGGTTAATTTTTTCATTTACCTACAAAGATCGTCATCTATTTTCTCATAATCTCATTTGAATTCTTACCCAAATTTCAAAACAAAAACAAACTTTTAAAAACTATTTCTTTTTATGTTTCAAAGGGAAAATATTGTTAGAGCGAGATAACAAAACCAAAGAATCATATAGCTAGAGCTAGGCAGGAGTTATATTTAGCTTAACAAACTAATTAAGCAAAGAATGCATGCATGTACAAAACTAATAAAATGGTTATATTAGAGACTGATTGATATTCTCAACCTTCTTCTATCCAACCAGTAGTAGAGACAACGACACGGGTAGCGACCGGGGAAGGCGAGCAAAACATGGCTGGAGCTGGAGTGGATCATCAAAAGAAGAAGAGGTTGAGTCAAGATCAGTTGGAGGCATTGGAGAGAAGCTTTCAAGAAGAAGTAAAGCTTGATCCTGATAGAAAAATGAAGCTTTCAAAGGAACTTGGGCTTCAACCAAGGCAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGTTGGAAGACTAAGCAACTTGAGCATCTCTATGATACTCTCAAGCAACAATTTGATACTATCTCTAAGGAAAAACACAACCTTCAACAAGAGGTCTCTCTCTCTCTAATCTTTTCATTGTTAAGTTGTCAGAAATAGACTGTAAAAGTGACTTAGAAATGCATGGAATCACTTTATTAGTAACAAATAAGATAATGTTTCCAAGTGTTTAAGAAACTTGTTCTAAATAGACTGTATAAACTATATCATTGAGTTGGCATTAATTAGCACGTCAATTATATATAAATCATTATCACTAAAATAGCTTAATCATATTCTTTGACATAAAATCATGCAAAAACATCCCACCATAAAGCCTTAAAAGTATTGTGTTTATAAACAATGACCTAAAAAACATCTTGAGAAAGGAAAGGATATTATACCCTTCAATGACATTATAGAAAATATGGATGGGTTACGTTAATACATTAAATTGAGATTATTATGTGGCCCTGAACATCTTAATCATATAAATGAAAGATAGTACTCATGTAATTCCTCGACTCTTTTCGATATCTCCAACTGGCTATAGTTCATCCCTTTGAAAGTTTGGTTTTTTTCAATAATAGTGGTTGATTTAATGTGATATCAGGAAAAAAAAAGAAGAAGTCCTTTGTTAACTTAAGCTTTTGGATTGGCGGGACAGGTGATGAAATTAAGAAGCATGCTAAGAGAACAGACAACGAGGAACCAAGGGTCGATGGCTCACACGGACGTCTCTGGGGAAGAGACGACGGTGGAGTGCACGTCGGTGGAGATTCTGAGCTGTAACAATTACATGTACAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACTTGCCTTCTTATCCTTAG TTTAGCTTTGGCCTTTCTTTATGTATATCTATATCTATATATCTATATCTATATATATGTATGTGTGTGTGTTTATATATAGAGAGATAGATAGATAGATATTGATGTTGTTTGTGGTCCATTTGGTTTGAACAAAACAGAGAGGTTGTTGTGAGAAAAGAAATCCATATTCCAAATACATATGGAATGGAATAATGGAAATATAAGTTTTAGTTCTAACTTTGTTTCTCCACCACCACAATCTTCTTCTTCCTCTGCATTGCTTTACAACTACAGCTTCAACTGCAACTACAATTTGGATCACTTTCCTGTAGTAGAGACAACGACACGGGTAGCGACCGGGGAAGGCGAGCAAAACATGGCTGGAGCTGGAGTGGATCATCAAAAGAAGAAGAGGTTGAGTCAAGATCAGTTGGAGGCATTGGAGAGAAGCTTTCAAGAAGAAGTAAAGCTTGATCCTGATAGAAAAATGAAGCTTTCAAAGGAACTTGGGCTTCAACCAAGGCAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGTTGGAAGACTAAGCAACTTGAGCATCTCTATGATACTCTCAAGCAACAATTTGATACTATCTCTAAGGAAAAACACAACCTTCAACAAGAGGTGATGAAATTAAGAAGCATGCTAAGAGAACAGACAACGAGGAACCAAGGGTCGATGGCTCACACGGACGTCTCTGGGGAAGAGACGACGGTGGAGTGCACGTCGGTGGAGATTCTGAGCTGTAACAATTACATGTACAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACTTGCCTTCTTATCCTTAG ATGGAATGGAATAATGGAAATATAAGTTTTAGTTCTAACTTTGTTTCTCCACCACCACAATCTTCTTCTTCCTCTGCATTGCTTTACAACTACAGCTTCAACTGCAACTACAATTTGGATCACTTTCCTGTAGTAGAGACAACGACACGGGTAGCGACCGGGGAAGGCGAGCAAAACATGGCTGGAGCTGGAGTGGATCATCAAAAGAAGAAGAGGTTGAGTCAAGATCAGTTGGAGGCATTGGAGAGAAGCTTTCAAGAAGAAGTAAAGCTTGATCCTGATAGAAAAATGAAGCTTTCAAAGGAACTTGGGCTTCAACCAAGGCAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGTTGGAAGACTAAGCAACTTGAGCATCTCTATGATACTCTCAAGCAACAATTTGATACTATCTCTAAGGAAAAACACAACCTTCAACAAGAGGTGATGAAATTAAGAAGCATGCTAAGAGAACAGACAACGAGGAACCAAGGGTCGATGGCTCACACGGACGTCTCTGGGGAAGAGACGACGGTGGAGTGCACGTCGGTGGAGATTCTGAGCTGTAACAATTACATGTACAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACTTGCCTTCTTATCCTTAG MEWNNGNISFSSNFVSPPPQSSSSSALLYNYSFNCNYNLDHFPVVETTTRVATGEGEQNMAGAGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQGSMAHTDVSGEETTVECTSVEILSCNNYMYNVEDFNQISASAPPFWWGAEAAHLPSYP* Homology
BLAST of CsGy6G024540 vs. ExPASy Swiss-Prot
Match: Q9LZR0 (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana OX=3702 GN=ATHB-51 PE=2 SV=2) HSP 1 Score: 147.9 bits (372), Expect = 1.4e-34 Identity = 96/197 (48.73%), Postives = 128/197 (64.97%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy Swiss-Prot
Match: Q4PSR7 (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana OX=3702 GN=ATHB-22 PE=2 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 4.6e-30 Identity = 79/165 (47.88%), Postives = 112/165 (67.88%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy Swiss-Prot
Match: A2X980 (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=HOX16 PE=2 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.4e-23 Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy Swiss-Prot
Match: Q6YWR4 (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX16 PE=2 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.4e-23 Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy Swiss-Prot
Match: Q8LC03 (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana OX=3702 GN=ATHB-13 PE=2 SV=2) HSP 1 Score: 109.4 bits (272), Expect = 5.4e-23 Identity = 85/226 (37.61%), Postives = 125/226 (55.31%), Query Frame = 0
BLAST of CsGy6G024540 vs. NCBI nr
Match: XP_004143373.2 (homeobox-leucine zipper protein ATHB-22 isoform X1 [Cucumis sativus] >KGN48225.1 hypothetical protein Csa_003985 [Cucumis sativus]) HSP 1 Score: 441 bits (1133), Expect = 8.29e-156 Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0
BLAST of CsGy6G024540 vs. NCBI nr
Match: XP_031742621.1 (homeobox-leucine zipper protein ATHB-22 isoform X2 [Cucumis sativus]) HSP 1 Score: 434 bits (1117), Expect = 2.20e-153 Identity = 222/224 (99.11%), Postives = 222/224 (99.11%), Query Frame = 0
BLAST of CsGy6G024540 vs. NCBI nr
Match: XP_008462523.1 (PREDICTED: homeobox-leucine zipper protein ATHB-22-like [Cucumis melo]) HSP 1 Score: 417 bits (1072), Expect = 1.60e-146 Identity = 212/224 (94.64%), Postives = 218/224 (97.32%), Query Frame = 0
BLAST of CsGy6G024540 vs. NCBI nr
Match: XP_031742623.1 (putative homeobox-leucine zipper protein ATHB-51 isoform X4 [Cucumis sativus]) HSP 1 Score: 352 bits (904), Expect = 1.66e-121 Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0
BLAST of CsGy6G024540 vs. NCBI nr
Match: XP_031742622.1 (putative homeobox-leucine zipper protein ATHB-51 isoform X3 [Cucumis sativus]) HSP 1 Score: 351 bits (901), Expect = 4.28e-121 Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy TrEMBL
Match: A0A0A0KET9 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449320 PE=4 SV=1) HSP 1 Score: 441 bits (1133), Expect = 4.02e-156 Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy TrEMBL
Match: A0A1S3CIQ6 (homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo OX=3656 GN=LOC103500861 PE=4 SV=1) HSP 1 Score: 417 bits (1072), Expect = 7.72e-147 Identity = 212/224 (94.64%), Postives = 218/224 (97.32%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy TrEMBL
Match: A0A5A7SJ21 (Homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001530 PE=4 SV=1) HSP 1 Score: 339 bits (869), Expect = 2.73e-116 Identity = 173/181 (95.58%), Postives = 177/181 (97.79%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy TrEMBL
Match: A0A5D3CAN1 (Homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00890 PE=4 SV=1) HSP 1 Score: 337 bits (864), Expect = 1.58e-115 Identity = 172/181 (95.03%), Postives = 177/181 (97.79%), Query Frame = 0
BLAST of CsGy6G024540 vs. ExPASy TrEMBL
Match: A0A6J1IJF1 (putative homeobox-leucine zipper protein ATHB-51 OS=Cucurbita maxima OX=3661 GN=LOC111477634 PE=4 SV=1) HSP 1 Score: 254 bits (650), Expect = 7.88e-83 Identity = 148/227 (65.20%), Postives = 167/227 (73.57%), Query Frame = 0
BLAST of CsGy6G024540 vs. TAIR 10
Match: AT5G03790.1 (homeobox 51 ) HSP 1 Score: 147.9 bits (372), Expect = 9.8e-36 Identity = 96/197 (48.73%), Postives = 128/197 (64.97%), Query Frame = 0
BLAST of CsGy6G024540 vs. TAIR 10
Match: AT2G36610.1 (homeobox protein 22 ) HSP 1 Score: 132.9 bits (333), Expect = 3.3e-31 Identity = 79/165 (47.88%), Postives = 112/165 (67.88%), Query Frame = 0
BLAST of CsGy6G024540 vs. TAIR 10
Match: AT1G69780.1 (Homeobox-leucine zipper protein family ) HSP 1 Score: 109.4 bits (272), Expect = 3.9e-24 Identity = 85/226 (37.61%), Postives = 125/226 (55.31%), Query Frame = 0
BLAST of CsGy6G024540 vs. TAIR 10
Match: AT2G22430.1 (homeobox protein 6 ) HSP 1 Score: 107.1 bits (266), Expect = 1.9e-23 Identity = 60/127 (47.24%), Postives = 88/127 (69.29%), Query Frame = 0
BLAST of CsGy6G024540 vs. TAIR 10
Match: AT5G15150.1 (homeobox 3 ) HSP 1 Score: 106.7 bits (265), Expect = 2.5e-23 Identity = 65/145 (44.83%), Postives = 91/145 (62.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|