CsGy6G024040 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G024040
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RNA polymerase sigma factor
Location	Gy14Chr6: 23993970 .. 23999196 (+)
RNA-Seq Expression	CsGy6G024040
Synteny	CsGy6G024040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTGAAGTTTGCATATATAACCGAAACCTGATCCATTTGAAAATATCAAGTACCGATTCTGAGGTGTGAATTACTCTGCCAAACTACTGAAGAACATCTTCTTTATCTAAAAATCCCACCGAAGCCCATTTCTCCCCAAATCCCTTTGAACGAATCTGCAGAAAATGAGGACCCAGATGCTTTAAAGTGATTGAACGCCAGTAAATTTCTCAGTGAACAGTCCCCCAGGACACTTTCATGTGAGGAGAGACTCTTAGCCTTTGTATTACTTCATTAGGAACTGTGAGATTTTACTATGGAAGCTGGACTCAATTTGCTCTCTTCTTCATCGCCCTTCATTTCAAGATGCCACCCGAGAAGTTTCCTTGCTCCTTCTTGTTCTTCTGCTGCTTCTCCCTCCTCCTCCTCTTCTTCTTCTTCAGGTAGTATTTGTAGTTTTATATTTCGCTCATTTTTGTGCTTTCTATGGGTTTTTTCCTGTTGCATTTAGCTTAAGTGTGAAACTCAGAGTGTTCTGGTTTAAGTATTTCGAGATGGGTTTGTCATAGTTTGATTTTATTCCGCTTCAAATGGCAATTTCTCGTTCAAATTGTGGGAATTTGACTATGTAGGATGTTATCAGAAATGAGGCCTCGTTGGGCTTGTTAATTCATTTATTTCCCTTTCTAGAGTGATTTATTTTTAGGAGAAGCTTTTGTTGCTTTTTCCTCATGGATACTCCAAGTGCTCTTTTATTATTTTTGAATTTTGGAGGATGTAACTCAACACCACAAAATTTTGAAATTTATTTTTAATTGGAAAAATGCTTATAAGAGTCATCAATCAATGTTGATTTTTCTGTTAGATGATATAATATTAAATTTACCTTTCACCCATTAATTTAAACATTTGGGTCGATCAATGATTTATCATGATATGAAAGAATGCGGTTGAAGGGTTGAAATTAATTGATTTCTATTTATTTGGTTTTTTTTTTTTTTCATATTTCAAGCCCAGTGAGGGGGAGTTTAGATGACATGATATTCAATTTACCTTCATCCATTGGCTTTAAATTTTAGGCCAACTGGTGATTTAACATTTAATTAATTTTCTACATTTACATTCACGTATAGCTAGAAATGCTACATCTACTCAGGTACATGTTTGTTATAAATCCTGCAGTTTATATGTTTCCTGAGCAAGCGTCTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCGCAAATACTCAAGGATGATAGATCATCCCAGGTTAGAATTATTGTAAACTTATGCATTTAAATTAGATTATTTTATAGTACATAGGACTATATTACCATTTTGAGATTTTCTCAGTAACATGAAATTCTTTCTTGTGCATTGACTTTTATTTGTGAATGGTTGTATGGAATTTTAGGACACACACTCCTTATTGTTCTAACCAAAGTGTATCTTGTCTAAGAGCCTCTTTGGAACAACTTTTTAAGTACTAAAAAAGTGTTTCTTAGTGCATAGCAAGTCATTCCAAACATGTCTCTAGTTGCACCAAGCAAACTCTGGTTGATATTCCATGTATCTTTTTAAGGATAACTCCTTTATTGTCTTAACAGCTCTATTGTGATTTTTCTGTTAAAATGTGTAAAGTCTTTTTCACTGAGCATACCGATACTCTGACTATAACTGTATGTCAGCGCTAATGACCAGTTTCCATTTGGACACATGCTCTATCTCTCACTCCCTCTCATATACACTCACAATTATACATAGTTAAGTCTTTATATCATTATATGTATCTGTGTGTGCATACCTGCATTTTGGAATTCTAATTAATAGTTCATTTGATGCCCATTGTGAAGATGACTCTAGAAAGGAGGCTGATCGAGAGGAGTGTTCCAATCGATGAAGGCAGTCGAGATGACCATGACCATCTGATCTGGGAACTTAAGCATCAAGCGGTTGAGTGGCCTGGTTTATTATCATCGTAAGATGAACTAAACTTCCTTCTCCTGACTCTTTTTTATCAATACATAGATGACAACCCTTGTCTGTATCCTTTCTTTTATATTGAGTAAATACAATTATTTTGCAGATGGCCACCCGTACAAATGGAGGAATATAAGATCTCATCAATCGAAAAAGAATCCTATAATGCTGCTGGGGAGATGCTTGTTAAAGATGAACCTGAGAATGTCATTGCCCTTGCCAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATTATTAGTTGACGAGACTGAATTAGTTGGTACTAGTCTGGACTATAGTTCTCTTGATGAGTAAGTTATATTTTTCTATTCTTATGGTAATATAGTCTCATTGCAACTGTAGTCTTGCTCATATTTCCATATATTCATTGATTAGTTCTCTAAGCAAGGAGGGGAGAACTGTAAGGTCAACTAGACTGCAAGATAGACGATCTAAGAAGAGAAAGGTGCCAAAACACGTAACAACTATTGATGAGATTTCTAATTTTAGGGGAAAAGATTCACGGAGAAAAACAAGTGAAAAGTTTGATCCTAATGATCCTCTACGACTGTTCTTATGGGGTCCTGAAACAAAGAAGCTTTTAACAGCTCAAGAAGAGTCTGAGTTGATAGTCCAAATCCAGGTATGCTTGTGAAGGCTATCTATTTTCCATTTTCAGTTGTCATACGGCTTCTACTCATCAGGATTATTGCAGATGATTCTTGATCAAGTAACCTTTTAACAGGATTTAATGATACTGGACAACGTGAAAGCTAGACTTCAATCTCAGTTTGACCGTGAACCAACTTTAGTTGAATGGGCTGAAGCTTTAGGGATTACTTGTCAACACTTACAGTCACAGCTTCACGTCTTTCAAACCAGTCGTGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCTAAACAATATCAGGGTCGTGGTCTCAGCCTTCACGACTTATTGCAGGTTATGCTCTGAATATGAGGCATGCATCTGTGGTGCAAAGTCTTTACTCTCTTTCCAGTCAGTAGATGAATTGAAAAAAGTTTGTAGGCCACTGGACACACGCGTACTGAGCAGTGCTAGACATGTATTTCTCAAACCTTCTGCTTCAGGCATCGTGCTTATGTTAGACATTTTTCATTTTCTTGTTGGTTTTAGAAACCTCTTGTTTTCTGGTTTATCCAGCCGTCTGTCTGCCTGTCTATCTTATTTAACATTTTTCATTTTCTTGTTCCTTCTATTGTATGGCTGAAACCCTTAAGTGGAGTCCTGCTCTAAACAGGAACTATACAAACCTCTTAATATTAAGCTATTTGAGCCAAGGGATTTGGTTCAGAGTTCTAGTTTCTTATTTCAACGTTTGCGTTTTCTATTTGGAATATAATCCCTATCTAATATGTTGGGATTCATGAATGGGCTGCTGAAATTTTTTGGTTCATTTCTTTATATTGTTTTAGGTAGGAAGCTTGGGACTTATGAAGAGCGTAGAAAAGTTCAAACCACAAGCTGGTTGCCGCTTTGGCTCTTATGCTTATTGGTGGATTAGGCATTCAATTACTAAGGCAATATTCCAACACTCCAGAACAATTCGCTTACCGGTAATGACAGTTCTTTGGTCTTTAGGTTCATTCTTGAAGAAATATAAAGATTAAATTTTCTTGTCCACTTAACGCTCTTCTTTTCTCTTTATTATGTTGTCCTTTTTTTCGTGCTTAACTGGTTTTCTTACAAAGGTAACAAGTAGAGAAGATTTGCGTTGACATTTGCAGGAAAATGTATATGCCCTCCTCGGAAAGGTGACAGAGGCGAAAAATTATTTTGTTCGAGCAGGGAATTATAAGCCATCTAAAGAAGAGTTAGCAGCACGTGTTGGAATTACAGTGGAGAGATTTGATAAGTTAATGTTTATGTCGAGAATCCCACGTTCCTTGCAGCAACCTGTATGGGCTGACCAAGAAACCACTTTTCAGGTATCTATCACTTCGTCTCTTGACTTTTAACCAACAAAATAGGACAGAAAATTGAACAAAGATAGGGTATGACTTTAAACATACTGCTTATTGAATGTAAGATTTTAGATTCTTACCTTTCACAAAGATTGCTAATGTGGTTCAGAGAAGTGGAACACTTATTCAACCTTGCGGCTTTGCTAAATGCTGGTTACTAATGAAATTCACTTTATAATGGTAATTATCGACAGGGAAGCCGTTTTAAATGTGAAAGACGTCAGGAATAGAGATCAGATAAATATATACCTATTATTGAAAAATCCATATTGCTAAGTTCCATCATTTTGTCTGTTGCCCAAGGGTTGGTATTAGTTTGTCACTGGACAATGATTATAAGTTGTTTTGCTGGTATCATTTGGAAATATAATTTAGAACTAGTTGCTACCCTTTAATAATGAAAACACAGAAAATGCATAGATACATTCATGATTTCACCGGGTGCGTTAGATAGAGAGAGTCGATCCATAAATGCATATGATAGATTCACTCTAACATCATACCAAACCATAATCTGAGAATGCATTCTGAATTATATTACAGGAAATAACTGCAGACTCTGAAGTTGACACACCGGATGTCAGTGTGGAAAGGGAACTTATGCGAAGGCACATTCGGAATCTCCTTAGCATTCTCAGTCCAAAAGAGAGACGGATAATCAGACTACGATTTGGTATTGAAGATGGTAGAGAGAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTACGACAGCTTGAAAACCGAGCCTTATACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGGCGCATATGCCGATTTACTGACTTGAAATCATATGATCATTGCCTTTTGTATTATATGCATCAACTTGATCTGAACATTTCATCTTCCATATATCAGAAGCTGTAGTTTTGGGCAGTTGGAAGGTCTCTTTCAGAAACTCTGCCAGAAACAAACAATAACTTTTGTAAGTTCCAACAGCTATGTATTGTGTGTATATGAAGCTCATTTGTATTTTTTTTACGTGTAGTACAACCTGGTACTGCTCTTCTAAGATGCTTAGCAATTGATACTGATGAAATATGCTGACATCTTAAAGTGTATCTTTTAATTCATTCCAGATATGATATTCAATGAAAATGAAGAAACAATACTTTTTCCCGGAACTGTATCATATCGATAAAAAATTTCTCCCCCGGCTTGCTCAG

mRNA sequence

TTCCTGAAGTTTGCATATATAACCGAAACCTGATCCATTTGAAAATATCAAGTACCGATTCTGAGGTGTGAATTACTCTGCCAAACTACTGAAGAACATCTTCTTTATCTAAAAATCCCACCGAAGCCCATTTCTCCCCAAATCCCTTTGAACGAATCTGCAGAAAATGAGGACCCAGATGCTTTAAAGTGATTGAACGCCAGTAAATTTCTCAGTGAACAGTCCCCCAGGACACTTTCATGTGAGGAGAGACTCTTAGCCTTTGTATTACTTCATTAGGAACTGTGAGATTTTACTATGGAAGCTGGACTCAATTTGCTCTCTTCTTCATCGCCCTTCATTTCAAGATGCCACCCGAGAAGTTTCCTTGCTCCTTCTTGTTCTTCTGCTGCTTCTCCCTCCTCCTCCTCTTCTTCTTCTTCAGTTTATATGTTTCCTGAGCAAGCGTCTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCGCAAATACTCAAGGATGATAGATCATCCCAGATGACTCTAGAAAGGAGGCTGATCGAGAGGAGTGTTCCAATCGATGAAGGCAGTCGAGATGACCATGACCATCTGATCTGGGAACTTAAGCATCAAGCGGTTGAGTGGCCTGGTTTATTATCATCATGGCCACCCGTACAAATGGAGGAATATAAGATCTCATCAATCGAAAAAGAATCCTATAATGCTGCTGGGGAGATGCTTGTTAAAGATGAACCTGAGAATGTCATTGCCCTTGCCAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATTATTAGTTGACGAGACTGAATTAGTTGGTACTAGTCTGGACTATAGTTCTCTTGATGATTCTCTAAGCAAGGAGGGGAGAACTGTAAGGTCAACTAGACTGCAAGATAGACGATCTAAGAAGAGAAAGGTGCCAAAACACGTAACAACTATTGATGAGATTTCTAATTTTAGGGGAAAAGATTCACGGAGAAAAACAAGTGAAAAGTTTGATCCTAATGATCCTCTACGACTGTTCTTATGGGGTCCTGAAACAAAGAAGCTTTTAACAGCTCAAGAAGAGTCTGAGTTGATAGTCCAAATCCAGGATTTAATGATACTGGACAACGTGAAAGCTAGACTTCAATCTCAGTTTGACCGTGAACCAACTTTAGTTGAATGGGCTGAAGCTTTAGGGATTACTTGTCAACACTTACAGTCACAGCTTCACGTCTTTCAAACCAGTCGTGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCTAAACAATATCAGGGTCGTGGTCTCAGCCTTCACGACTTATTGCAGGTAGGAAGCTTGGGACTTATGAAGAGCGTAGAAAAGTTCAAACCACAAGCTGGTTGCCGCTTTGGCTCTTATGCTTATTGGTGGATTAGGCATTCAATTACTAAGGCAATATTCCAACACTCCAGAACAATTCGCTTACCGGAAAATGTATATGCCCTCCTCGGAAAGGTGACAGAGGCGAAAAATTATTTTGTTCGAGCAGGGAATTATAAGCCATCTAAAGAAGAGTTAGCAGCACGTGTTGGAATTACAGTGGAGAGATTTGATAAGTTAATGTTTATGTCGAGAATCCCACGTTCCTTGCAGCAACCTGTATGGGCTGACCAAGAAACCACTTTTCAGGAAATAACTGCAGACTCTGAAGTTGACACACCGGATGTCAGTGTGGAAAGGGAACTTATGCGAAGGCACATTCGGAATCTCCTTAGCATTCTCAGTCCAAAAGAGAGACGGATAATCAGACTACGATTTGGTATTGAAGATGGTAGAGAGAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTACGACAGCTTGAAAACCGAGCCTTATACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGGCGCATATGCCGATTTACTGACTTGAAATCATATGATCATTGCCTTTTGTATTATATGCATCAACTTGATCTGAACATTTCATCTTCCATATATCAGAAGCTGTAGTTTTGGGCAGTTGGAAGGTCTCTTTCAGAAACTCTGCCAGAAACAAACAATAACTTTTGTAAGTTCCAACAGCTATGTATTGTGTGTATATGAAGCTCATTTGTATTTTTTTTACGTGTAGTACAACCTGGTACTGCTCTTCTAAGATGCTTAGCAATTGATACTGATGAAATATGCTGACATCTTAAAGTGTATCTTTTAATTCATTCCAGATATGATATTCAATGAAAATGAAGAAACAATACTTTTTCCCGGAACTGTATCATATCGATAAAAAATTTCTCCCCCGGCTTGCTCAG

Coding sequence (CDS)

ATGGAAGCTGGACTCAATTTGCTCTCTTCTTCATCGCCCTTCATTTCAAGATGCCACCCGAGAAGTTTCCTTGCTCCTTCTTGTTCTTCTGCTGCTTCTCCCTCCTCCTCCTCTTCTTCTTCTTCAGTTTATATGTTTCCTGAGCAAGCGTCTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCGCAAATACTCAAGGATGATAGATCATCCCAGATGACTCTAGAAAGGAGGCTGATCGAGAGGAGTGTTCCAATCGATGAAGGCAGTCGAGATGACCATGACCATCTGATCTGGGAACTTAAGCATCAAGCGGTTGAGTGGCCTGGTTTATTATCATCATGGCCACCCGTACAAATGGAGGAATATAAGATCTCATCAATCGAAAAAGAATCCTATAATGCTGCTGGGGAGATGCTTGTTAAAGATGAACCTGAGAATGTCATTGCCCTTGCCAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATTATTAGTTGACGAGACTGAATTAGTTGGTACTAGTCTGGACTATAGTTCTCTTGATGATTCTCTAAGCAAGGAGGGGAGAACTGTAAGGTCAACTAGACTGCAAGATAGACGATCTAAGAAGAGAAAGGTGCCAAAACACGTAACAACTATTGATGAGATTTCTAATTTTAGGGGAAAAGATTCACGGAGAAAAACAAGTGAAAAGTTTGATCCTAATGATCCTCTACGACTGTTCTTATGGGGTCCTGAAACAAAGAAGCTTTTAACAGCTCAAGAAGAGTCTGAGTTGATAGTCCAAATCCAGGATTTAATGATACTGGACAACGTGAAAGCTAGACTTCAATCTCAGTTTGACCGTGAACCAACTTTAGTTGAATGGGCTGAAGCTTTAGGGATTACTTGTCAACACTTACAGTCACAGCTTCACGTCTTTCAAACCAGTCGTGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCTAAACAATATCAGGGTCGTGGTCTCAGCCTTCACGACTTATTGCAGGTAGGAAGCTTGGGACTTATGAAGAGCGTAGAAAAGTTCAAACCACAAGCTGGTTGCCGCTTTGGCTCTTATGCTTATTGGTGGATTAGGCATTCAATTACTAAGGCAATATTCCAACACTCCAGAACAATTCGCTTACCGGAAAATGTATATGCCCTCCTCGGAAAGGTGACAGAGGCGAAAAATTATTTTGTTCGAGCAGGGAATTATAAGCCATCTAAAGAAGAGTTAGCAGCACGTGTTGGAATTACAGTGGAGAGATTTGATAAGTTAATGTTTATGTCGAGAATCCCACGTTCCTTGCAGCAACCTGTATGGGCTGACCAAGAAACCACTTTTCAGGAAATAACTGCAGACTCTGAAGTTGACACACCGGATGTCAGTGTGGAAAGGGAACTTATGCGAAGGCACATTCGGAATCTCCTTAGCATTCTCAGTCCAAAAGAGAGACGGATAATCAGACTACGATTTGGTATTGAAGATGGTAGAGAGAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTACGACAGCTTGAAAACCGAGCCTTATACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGGCGCATATGCCGATTTACTGACTTGA

Protein sequence

MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT*

Homology

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BLAST of CsGy6G024040 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 3.7e-145
Identity = 307/577 (53.21%), Postives = 394/577 (68.28%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQA---------- 60
           MEA  NL+SSS  F ++ H +             SS SS SSV M  +Q           
Sbjct: 1   MEATRNLVSSSPSFQTKTHLK-------------SSYSSPSSVVMLHDQTTTPVVNSRHL 60

Query: 61  -SPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLI 120
            S +R+F  S LSQE   E RP S  L+DDR+SQ+TLERR  +  V     SR+D +   
Sbjct: 61  NSLSRHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELV----SSRED-EKFE 120

Query: 121 WELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSA 180
            +L H    W  L+S   P+  E             A    L   E  +V+ALA+KALSA
Sbjct: 121 QQLLHSTGLWNLLIS---PLTSE---------TKLPAVVSPLADAELCDVVALAQKALSA 180

Query: 181 SKQAALLVDETEL-----VGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTT 240
           SKQAALLVD+TE      +  SL  SS   SL ++G  VRS R  +RR+K R+ PK    
Sbjct: 181 SKQAALLVDDTEANPSDNIKDSLSTSS-SMSLPEKGNIVRSKRQLERRAKNRRAPKSNDV 240

Query: 241 IDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNV 300
            DE    +   +++K  +  D +D L+LFLWGPETK+LLTA+EE+ELI  IQ L+ L+ V
Sbjct: 241 DDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKV 300

Query: 301 KARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGR 360
           K +L+SQ   EPT+ EWAEA+GI+   L+S +H  ++SREKLI ANLR+VVHIAKQYQ R
Sbjct: 301 KTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNR 360

Query: 361 GLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVY 420
           GL+  DLLQ GS+GLMKSVEKFKPQ+GCRF +YAYWWIR SI K+IFQ+SRTIRLPENVY
Sbjct: 361 GLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVY 420

Query: 421 ALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQET 480
            LLGKV+EA+   V+ GNY+PSKEELA  VG++ E+ DKL++ +R P S+QQP+W+DQ+T
Sbjct: 421 MLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDT 480

Query: 481 TFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIG 540
           TFQEIT DS ++TP +SV ++LMR H+RNLL++LSPKERRII+LRFGI+ G++++L EIG
Sbjct: 481 TFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIG 540

Query: 541 NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 562
            ++GLSKERVRQLE+RALY+LK+  NS GL AYADLL
Sbjct: 541 EIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLL 546

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BLAST of CsGy6G024040 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-63
Identity = 126/326 (38.65%), Postives = 211/326 (64.72%), Query Frame = 0


Query: 223 TTIDEISNFRGKDSRRKT--SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMI 282
           T  D+  + +   SRR+T   +K    D +RL+L      +LL A EE EL  +I DL+ 
Sbjct: 53  TDEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLE 112

Query: 283 LDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQ 342
           L+ V+ RL  + +R+P   EWAEA+ +     + +LH+ + +++K++ +NLR+VV IAK+
Sbjct: 113 LERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKK 172

Query: 343 YQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLP 402
           Y  RGLS  DL+Q GSLGL+++ EKF  + G +F +YA WWIR +IT+AI   SRTIRLP
Sbjct: 173 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 232

Query: 403 ENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWA 462
            ++Y  + ++ +      +    KP++EE+A R+ +T+E+   +   +++P SL+ P+  
Sbjct: 233 VHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGK 292

Query: 463 DQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTL 522
           ++++   +   +S+ +TP+  V + L+R  +  +L  LSP+ER ++RLR+G++DGR KTL
Sbjct: 293 EEDSRLGDF-IESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTL 352

Query: 523 LEIGNMFGLSKERVRQLENRALYKLK 547
            EIG +F +++ER+RQ+E +AL KL+
Sbjct: 353 EEIGQIFNVTRERIRQIEAKALRKLR 377

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BLAST of CsGy6G024040 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 244.2 bits (622), Expect = 3.5e-63
Identity = 145/419 (34.61%), Postives = 229/419 (54.65%), Query Frame = 0


Query: 140 EKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKE 199
           EKE     G + V D   N I   K   SAS + ++     +L     +   L +     
Sbjct: 156 EKERAGILGHLAVSD---NGIVSDKITASASNKESI----GDLESEKQEEVELLEEQPSV 215

Query: 200 GRTVRSTRLQDRRSKKRK-VPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPE 259
              VRSTR  +R++++ K + K  + I  +        +R  +++ D NDPLR       
Sbjct: 216 SLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTS 275

Query: 260 TKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHV 319
           + KLLT +EE EL   IQDL+ L+ ++  L  +  R+PT  +WA A G+  + L+ ++H 
Sbjct: 276 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 335

Query: 320 FQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYA 379
               ++K+I +N+R+V+ IAK YQG G++L DL+Q G  GL++  EKF    G +F +YA
Sbjct: 336 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 395

Query: 380 YWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITV 439
           +WWI+ ++ K++   SR IRLP ++     +V EA+          P  EE+A   G+++
Sbjct: 396 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 455

Query: 440 ERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSIL 499
           +R   ++   + PRSL Q +  +Q     E+ AD E  T +  + +E MR+ +  +L  L
Sbjct: 456 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSL 515

Query: 500 SPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY 558
             +E+++IR RFG+EDGR KTL EIG M G+S+ERVRQ+E+ A  KLK    +  L  Y
Sbjct: 516 GTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of CsGy6G024040 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 236.9 bits (603), Expect = 5.6e-61
Identity = 128/322 (39.75%), Postives = 204/322 (63.35%), Query Frame = 0


Query: 226 DEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVK 285
           DE +  + K   RKT  +    D +RL+L      +LL A EE EL  QI DL+ L+ ++
Sbjct: 71  DEDAAAKAKAKVRKTYTE----DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIR 130

Query: 286 ARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRG 345
             L  Q DR P+  EWA A+       + +L   + +++K++ +NLR+VV IAK+Y  RG
Sbjct: 131 DELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRG 190

Query: 346 LSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYA 405
           LS  DL+Q GSLGL+++ EKF  + G +F +YA WWIR +IT+AI   SRTIRLP ++Y 
Sbjct: 191 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 250

Query: 406 LLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETT 465
            + ++ +      +    KP++EE+A R+ +T+E+   +   +++P SL+ P+  ++++ 
Sbjct: 251 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR 310

Query: 466 FQE-ITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIG 525
             + I AD E  TP+  V + L+R  +  +LS LSP+ER ++RLR+G++DGR KTL EIG
Sbjct: 311 LGDFIEADGE--TPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIG 370

Query: 526 NMFGLSKERVRQLENRALYKLK 547
            +F +++ER+RQ+E +AL KL+
Sbjct: 371 QLFNVTRERIRQIEAKALRKLR 386

[Close]

BLAST of CsGy6G024040 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.1e-54
Identity = 127/371 (34.23%), Postives = 212/371 (57.14%), Query Frame = 0


Query: 227 EISNFRGKDSR----RKTSEKFDP--NDPLRLFLWGPETKKLLTAQEESELIVQIQDLMI 286
           E++   GK+ +    RK + K  P   D +R++L      +LL A+EE EL  QI DL+ 
Sbjct: 44  EVAATEGKEKKVRKIRKDAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQIADLLE 103

Query: 287 LDNVKARLQSQFDREPTLVEWAE---ALGITCQHL------------------------- 346
           L+ ++  L  Q +R+P+ +EW +    L    Q L                         
Sbjct: 104 LELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELS 163

Query: 347 ----------------QSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGS 406
                           + +L + + +++K++ +NLR+VV IAK+Y  RGLS  DL+Q GS
Sbjct: 164 LENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGS 223

Query: 407 LGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNY 466
           LGL+++ EKF  + G +F +YA WWIR +IT+AI   SRTIRLP ++Y  + ++ +    
Sbjct: 224 LGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKL 283

Query: 467 FVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQE-ITADSEV 526
             +    KP++EE+A ++ +T+E+   +   +++P SL+ P+  ++++   + I AD E 
Sbjct: 284 LSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE- 343

Query: 527 DTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVR 547
            TP+  V + L+R  + N+L  LSP+ER ++RLR+G++DGR KTL EIG +F +++ER+R
Sbjct: 344 -TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 403

[Close]

BLAST of CsGy6G024040 vs. NCBI nr
Match: XP_031742499.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hypothetical protein Csa_003758 [Cucumis sativus])

HSP 1 Score: 1091 bits (2822), Expect = 0.0
Identity = 562/562 (100.00%), Postives = 562/562 (100.00%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60
           MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF
Sbjct: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60

Query: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120
           LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180
           GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240
           ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT
Sbjct: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240

Query: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300
           SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE
Sbjct: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300

Query: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360
           WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM
Sbjct: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360

Query: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420
           KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420

Query: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480
           GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV
Sbjct: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480

Query: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540
           SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540

Query: 541 ALYKLKRCCNSQGLGAYADLLT 562
           ALYKLKRCCNSQGLGAYADLLT
Sbjct: 541 ALYKLKRCCNSQGLGAYADLLT 562

[Close]

BLAST of CsGy6G024040 vs. NCBI nr
Match: XP_038882876.1 (RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida])

HSP 1 Score: 971 bits (2511), Expect = 0.0
Identity = 504/562 (89.68%), Postives = 523/562 (93.06%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60
           MEAGLNLLSSSS FISRCHPRSFL PSCSS      SSSSSSV MF EQA PARYFSTSF
Sbjct: 1   MEAGLNLLSSSSLFISRCHPRSFLHPSCSS------SSSSSSVSMFHEQAIPARYFSTSF 60

Query: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120
           LSQEQHHECRPQSQILKDDR+SQ TL+RRLIERSV IDEG+R DHDHLIWE KHQAVEWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRTSQTTLDRRLIERSVSIDEGNRSDHDHLIWEFKHQAVEWP 120

Query: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180
           GLLSSWP +QMEEYKISS+EK+SYNA GEMLVKDEPENVIALAKKALSASKQAA LVDE+
Sbjct: 121 GLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAASLVDES 180

Query: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240
           ELVGT+LDY+S DDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTI E SN +GKDSRRKT
Sbjct: 181 ELVGTNLDYTSPDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIHETSNSKGKDSRRKT 240

Query: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300
            E FDPNDPLRLFLWGPETKKLLT +EESELIVQIQDLMILDNVKARLQSQF REPTLVE
Sbjct: 241 IENFDPNDPLRLFLWGPETKKLLTVEEESELIVQIQDLMILDNVKARLQSQFGREPTLVE 300

Query: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360
           WAEALG+TCQ LQSQL  F+ SREKLINANLRMVVHIAKQYQGRGLSL DLLQ GSLGLM
Sbjct: 301 WAEALGLTCQRLQSQLQSFRISREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSLGLM 360

Query: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420
           KSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRA 420

Query: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480
           GNYKPSKEELAARVGITVER DKL+FMSRIPRSLQQPVW DQ+TTFQEITADSE+DTPDV
Sbjct: 421 GNYKPSKEELAARVGITVERLDKLLFMSRIPRSLQQPVWTDQDTTFQEITADSELDTPDV 480

Query: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540
           SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENR 540

Query: 541 ALYKLKRCCNSQGLGAYADLLT 562
           ALYKLKRC NSQGLGAYADLLT
Sbjct: 541 ALYKLKRCSNSQGLGAYADLLT 556

[Close]

BLAST of CsGy6G024040 vs. NCBI nr
Match: XP_016902883.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] >XP_016902884.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 966 bits (2497), Expect = 0.0
Identity = 492/520 (94.62%), Postives = 502/520 (96.54%), Query Frame = 0


Query: 43  VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
           VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
            DHDHLIWELKHQAVEWP LLSSWP +QMEEYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
           AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 493

Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
           TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553

Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
           NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY 
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613

Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
           GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673

Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
           VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733

Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
           +TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793

Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of CsGy6G024040 vs. NCBI nr
Match: XP_016902885.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 966 bits (2497), Expect = 0.0
Identity = 492/520 (94.62%), Postives = 502/520 (96.54%), Query Frame = 0


Query: 43  VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
           VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 312 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 371

Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
            DHDHLIWELKHQAVEWP LLSSWP +QMEEYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 372 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 431

Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
           AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV
Sbjct: 432 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 491

Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
           TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 492 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 551

Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
           NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY 
Sbjct: 552 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 611

Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
           GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 612 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 671

Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
           VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 672 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 731

Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
           +TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 732 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 791

Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 792 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831

[Close]

BLAST of CsGy6G024040 vs. NCBI nr
Match: KAA0063818.1 (RNA polymerase sigma factor sigF [Cucumis melo var. makuwa])

HSP 1 Score: 964 bits (2493), Expect = 0.0
Identity = 491/520 (94.42%), Postives = 502/520 (96.54%), Query Frame = 0


Query: 43  VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
           VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
            DHDHLIWELKHQAVEWP LLSSWP +QMEEYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
           AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQ+RRSKKRKVPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQERRSKKRKVPKHV 493

Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
           TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553

Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
           NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY 
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613

Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
           GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673

Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
           VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733

Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
           +TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793

Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of CsGy6G024040 vs. ExPASy TrEMBL
Match: A0A0A0KEQ6 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1)

HSP 1 Score: 1091 bits (2822), Expect = 0.0
Identity = 562/562 (100.00%), Postives = 562/562 (100.00%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60
           MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF
Sbjct: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60

Query: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120
           LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180
           GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240
           ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT
Sbjct: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240

Query: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300
           SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE
Sbjct: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300

Query: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360
           WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM
Sbjct: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360

Query: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420
           KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420

Query: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480
           GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV
Sbjct: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480

Query: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540
           SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540

Query: 541 ALYKLKRCCNSQGLGAYADLLT 562
           ALYKLKRCCNSQGLGAYADLLT
Sbjct: 541 ALYKLKRCCNSQGLGAYADLLT 562

[Close]

BLAST of CsGy6G024040 vs. ExPASy TrEMBL
Match: A0A1S4E3S8 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 966 bits (2497), Expect = 0.0
Identity = 492/520 (94.62%), Postives = 502/520 (96.54%), Query Frame = 0


Query: 43  VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
           VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
            DHDHLIWELKHQAVEWP LLSSWP +QMEEYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
           AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 493

Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
           TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553

Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
           NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY 
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613

Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
           GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673

Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
           VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733

Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
           +TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793

Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of CsGy6G024040 vs. ExPASy TrEMBL
Match: A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 966 bits (2497), Expect = 0.0
Identity = 492/520 (94.62%), Postives = 502/520 (96.54%), Query Frame = 0


Query: 43  VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
           VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 312 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 371

Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
            DHDHLIWELKHQAVEWP LLSSWP +QMEEYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 372 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 431

Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
           AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV
Sbjct: 432 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 491

Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
           TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 492 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 551

Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
           NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY 
Sbjct: 552 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 611

Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
           GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 612 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 671

Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
           VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 672 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 731

Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
           +TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 732 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 791

Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 792 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831

[Close]

BLAST of CsGy6G024040 vs. ExPASy TrEMBL
Match: A0A5A7V893 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00350 PE=3 SV=1)

HSP 1 Score: 964 bits (2493), Expect = 0.0
Identity = 491/520 (94.42%), Postives = 502/520 (96.54%), Query Frame = 0


Query: 43  VYMFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSR 102
           VYMF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 103 DDHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIAL 162
            DHDHLIWELKHQAVEWP LLSSWP +QMEEYKISS EKESYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 163 AKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 222
           AKKALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQ+RRSKKRKVPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQERRSKKRKVPKHV 493

Query: 223 TTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILD 282
           TTI E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553

Query: 283 NVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQ 342
           NVKA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY 
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613

Query: 343 GRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPEN 402
           GRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673

Query: 403 VYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQ 462
           VYALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733

Query: 463 ETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLE 522
           +TT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793

Query: 523 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of CsGy6G024040 vs. ExPASy TrEMBL
Match: A0A5D3CAF4 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00200 PE=3 SV=1)

HSP 1 Score: 960 bits (2482), Expect = 0.0
Identity = 489/518 (94.40%), Postives = 500/518 (96.53%), Query Frame = 0


Query: 45  MFPEQASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDD 104
           MF EQASPARYFSTSFLSQEQHHECRPQSQILKDDR+SQMTL+RRLIERSVPIDEGSR D
Sbjct: 1   MFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSRSD 60

Query: 105 HDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAK 164
           HDHLIWELKHQAVEWP LLSSWP +QMEEYKISS EKESYNA GEMLVKDEPENVIALAK
Sbjct: 61  HDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIALAK 120

Query: 165 KALSASKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTT 224
           KALSASKQAALLVDE+ELVGTSLDYSSLDDSLSKEGRTVRSTRLQ+RRSKKRKVPKHVTT
Sbjct: 121 KALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQERRSKKRKVPKHVTT 180

Query: 225 IDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNV 284
           I E SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNV
Sbjct: 181 IHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILDNV 240

Query: 285 KARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGR 344
           KA+LQSQF REPTLVEWAEALGITCQ LQSQLH F+TSREKLINANLRMVVHIAKQY GR
Sbjct: 241 KAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYLGR 300

Query: 345 GLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVY 404
           GLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLPENVY
Sbjct: 301 GLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVY 360

Query: 405 ALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQET 464
           ALLGKVTEAKNY VRAGNYKPSKEELAA VGITVER DKLMFMSRIPRSLQQPVWADQ+T
Sbjct: 361 ALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQDT 420

Query: 465 TFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIG 524
           T+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIG
Sbjct: 421 TYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIG 480

Query: 525 NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562
           NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 481 NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 518

[Close]

BLAST of CsGy6G024040 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 516.5 bits (1329), Expect = 2.6e-146
Identity = 307/577 (53.21%), Postives = 394/577 (68.28%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQA---------- 60
           MEA  NL+SSS  F ++ H +             SS SS SSV M  +Q           
Sbjct: 1   MEATRNLVSSSPSFQTKTHLK-------------SSYSSPSSVVMLHDQTTTPVVNSRHL 60

Query: 61  -SPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLI 120
            S +R+F  S LSQE   E RP S  L+DDR+SQ+TLERR  +  V     SR+D +   
Sbjct: 61  NSLSRHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELV----SSRED-EKFE 120

Query: 121 WELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSA 180
            +L H    W  L+S   P+  E             A    L   E  +V+ALA+KALSA
Sbjct: 121 QQLLHSTGLWNLLIS---PLTSE---------TKLPAVVSPLADAELCDVVALAQKALSA 180

Query: 181 SKQAALLVDETEL-----VGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTT 240
           SKQAALLVD+TE      +  SL  SS   SL ++G  VRS R  +RR+K R+ PK    
Sbjct: 181 SKQAALLVDDTEANPSDNIKDSLSTSS-SMSLPEKGNIVRSKRQLERRAKNRRAPKSNDV 240

Query: 241 IDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNV 300
            DE    +   +++K  +  D +D L+LFLWGPETK+LLTA+EE+ELI  IQ L+ L+ V
Sbjct: 241 DDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKV 300

Query: 301 KARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGR 360
           K +L+SQ   EPT+ EWAEA+GI+   L+S +H  ++SREKLI ANLR+VVHIAKQYQ R
Sbjct: 301 KTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNR 360

Query: 361 GLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVY 420
           GL+  DLLQ GS+GLMKSVEKFKPQ+GCRF +YAYWWIR SI K+IFQ+SRTIRLPENVY
Sbjct: 361 GLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVY 420

Query: 421 ALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQET 480
            LLGKV+EA+   V+ GNY+PSKEELA  VG++ E+ DKL++ +R P S+QQP+W+DQ+T
Sbjct: 421 MLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDT 480

Query: 481 TFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIG 540
           TFQEIT DS ++TP +SV ++LMR H+RNLL++LSPKERRII+LRFGI+ G++++L EIG
Sbjct: 481 TFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIG 540

Query: 541 NMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 562
            ++GLSKERVRQLE+RALY+LK+  NS GL AYADLL
Sbjct: 541 EIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLL 546

[Close]

BLAST of CsGy6G024040 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 244.2 bits (622), Expect = 2.5e-64
Identity = 145/419 (34.61%), Postives = 229/419 (54.65%), Query Frame = 0


Query: 140 EKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKE 199
           EKE     G + V D   N I   K   SAS + ++     +L     +   L +     
Sbjct: 156 EKERAGILGHLAVSD---NGIVSDKITASASNKESI----GDLESEKQEEVELLEEQPSV 215

Query: 200 GRTVRSTRLQDRRSKKRK-VPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPE 259
              VRSTR  +R++++ K + K  + I  +        +R  +++ D NDPLR       
Sbjct: 216 SLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTS 275

Query: 260 TKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHV 319
           + KLLT +EE EL   IQDL+ L+ ++  L  +  R+PT  +WA A G+  + L+ ++H 
Sbjct: 276 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 335

Query: 320 FQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYA 379
               ++K+I +N+R+V+ IAK YQG G++L DL+Q G  GL++  EKF    G +F +YA
Sbjct: 336 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 395

Query: 380 YWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITV 439
           +WWI+ ++ K++   SR IRLP ++     +V EA+          P  EE+A   G+++
Sbjct: 396 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 455

Query: 440 ERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSIL 499
           +R   ++   + PRSL Q +  +Q     E+ AD E  T +  + +E MR+ +  +L  L
Sbjct: 456 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSL 515

Query: 500 SPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY 558
             +E+++IR RFG+EDGR KTL EIG M G+S+ERVRQ+E+ A  KLK    +  L  Y
Sbjct: 516 GTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of CsGy6G024040 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-40
Identity = 102/302 (33.77%), Postives = 155/302 (51.32%), Query Frame = 0


Query: 256 GPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQ 315
           G      L+  EE +L + +++   L+N+   ++   + E   V  A   G   +     
Sbjct: 116 GASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVE---ENEMVSVLLASGRGKKKRSANEI 175

Query: 316 LHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFG 375
           L   + +REK+     R+VV IA  YQG+GL+L DL+Q GS+GL++  E+F P  G +  
Sbjct: 176 LCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLS 235

Query: 376 SYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVG 435
           +Y YWWI+ +I +AI   SR ++LP +++ L  KV EA N   R    +PS EE+A  + 
Sbjct: 236 TYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLN 295

Query: 436 ITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLL 495
           + V      +  SR P SL +    +   T QEI    +   P+  V+RE M+  I  LL
Sbjct: 296 LNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLL 355

Query: 496 SILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLG 555
             L+ +E R++ L FG+      +  EIG    LS+ERVRQ+   AL KL+   N   L 
Sbjct: 356 GSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLK 414

Query: 556 AY 558
            Y
Sbjct: 416 IY 414

[Close]

BLAST of CsGy6G024040 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-36
Identity = 100/392 (25.51%), Postives = 197/392 (50.26%), Query Frame = 0


Query: 170 SKQAALLVDETELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTI---D 229
           S   + L D TELV T+ +      S  K  +  R + +      +  +P  + T     
Sbjct: 197 SSITSCLSDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNI 256

Query: 230 EISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKA 289
           ++   R     RK  E+   N                    E+E+   ++ +  ++ ++ 
Sbjct: 257 DVPRVRRPPKYRKKRERISRN--------------------ETEMSTGVKIVADMERIRT 316

Query: 290 RLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGL 349
           +L+ +  +  +L  WA A G+  + L   LH     R++L+ +   +V+ +A+ Y+G G+
Sbjct: 317 QLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGI 376

Query: 350 SLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYAL 409
           +  DL+Q G +G+++  E+F    G +F +Y  +WIR S++  + +H+R + +P ++   
Sbjct: 377 AHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRT 436

Query: 410 LGKVTEAKNYFVRAGNYK-PSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETT 469
           +  + +A+     +   K  + EE+A   G +V++        ++  S+ + V     T 
Sbjct: 437 INHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTK 496

Query: 470 FQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGN 529
           F E T D+ +++P+ +V R+  RR I +LL  L P+E++++ LR+G++D R K+L EIG 
Sbjct: 497 FLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGK 556

Query: 530 MFGLSKERVRQLENRALYKLKRCCNSQGLGAY 558
           +  +SKE +R++E RA+ KL+   N++ L  Y
Sbjct: 557 LLKVSKEWIRKIERRAMAKLRDQPNAEDLRYY 568

[Close]

BLAST of CsGy6G024040 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 127.1 bits (318), Expect = 4.5e-29
Identity = 115/425 (27.06%), Postives = 203/425 (47.76%), Query Frame = 0


Query: 139 IEKESYNAAGEMLVKDEPENVIALAKKALSASKQAAL-LVDETELVGTSLDYSSLDDSLS 198
           +E+E Y+   + L+    E ++ L K  L  S   +      +E  G           ++
Sbjct: 96  LEEECYD--DDDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVIT 155

Query: 199 KEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGP 258
             G + R  R+    +KK+    HV  + ++S+  GK               +R ++ G 
Sbjct: 156 CSGISARQRRI---GAKKKTNMTHVKAVSDVSS--GKQ--------------VRGYVKGV 215

Query: 259 ETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLH 318
            ++ +L+  E   L  +I+  + LD+ K+RL+ +   EP+  + A +L I+   LQ+ L 
Sbjct: 216 ISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLM 275

Query: 319 VFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSY 378
               +REKL  +N+R+V+ IA++Y   G  + DL+Q G +GL++ +EKF    G R  +Y
Sbjct: 276 ECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTY 335

Query: 379 AYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGIT 438
            YWWIR  +++A+  +SRT+RLP +++  LG +  AK      G   PS + +A  + ++
Sbjct: 336 VYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKG-ITPSIDRIAESLNMS 395

Query: 439 VERFDKLMFMSRIPRSLQQPVWADQE----TTFQEITADSEVD-TPDVSVERELMRRHIR 498
            ++            SL +  +         T     AD+ ++  P    +   ++  + 
Sbjct: 396 QKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVS 455

Query: 499 NLLS-ILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNS 557
            L+S  L  +E+ IIRL +G+ D    T  +I    GLS+ERVRQ+   AL KLK     
Sbjct: 456 KLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 497

The following BLAST results are available for this feature:

BLAST of CsGy6G024040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD95	3.7e-145	53.21	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
P26683	1.6e-63	38.65	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
O22056	3.5e-63	34.61	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P38023	5.6e-61	39.75	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P74565	5.1e-54	34.23	RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]

BLAST of CsGy6G024040 vs. NCBI nr


Match Name	Identity	Description
XP_031742499.1	100.00	RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hy...	[more]
XP_038882876.1	89.68	RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida]	[more]
XP_016902883.1	94.62	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis m...	[more]
XP_016902885.1	94.62	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis m...	[more]
KAA0063818.1	94.42	RNA polymerase sigma factor sigF [Cucumis melo var. makuwa]	[more]

BLAST of CsGy6G024040 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A0A0KEQ6	100.00	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1	[more]
A0A1S4E3S8	94.62	RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S4E4I4	94.62	RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
A0A5A7V893	94.42	RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CAF4	94.40	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of CsGy6G024040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36990.1	2.6e-146	53.21	RNApolymerase sigma-subunit F	[more]
AT1G08540.1	2.5e-64	34.61	RNApolymerase sigma subunit 2	[more]
AT5G13730.1	1.9e-40	33.77	sigma factor 4	[more]
AT3G53920.1	1.7e-36	25.51	RNApolymerase sigma-subunit C	[more]
AT1G64860.1	4.5e-29	27.06	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 519..534 score: 49.64 coord: 534..545 score: 52.74 coord: 374..382 score: 64.37 coord: 498..510 score: 43.67 coord: 350..363 score: 53.13
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 350..363
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 519..545
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 399..476 e-value: 2.4E-8 score: 36.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 481..561 e-value: 7.0E-24 score: 85.3
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 326..395 e-value: 1.8E-17 score: 62.8
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 494..546 e-value: 4.5E-17 score: 61.3
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 322..548 e-value: 1.2E-34 score: 117.3
None	No IPR available	GENE3D	1.20.120.1810		coord: 129..395 e-value: 2.9E-37 score: 130.4
None	No IPR available	PANTHER	PTHR30603:SF50	RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED	coord: 33..561
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 33..561
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 488..546 e-value: 2.27286E-11 score: 57.1142
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 407..479 e-value: 6.5E-14 score: 51.8
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 2..562 e-value: 1.1E-152 score: 507.8
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 246..396
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 457..556
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 399..472

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G024040.1	CsGy6G024040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity