CsGy6G023985 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G023985
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 23971702 .. 23972034 (+)
RNA-Seq Expression	CsGy6G023985
Synteny	CsGy6G023985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCAAACCATGGCAATGAAACAGATACTCCCACTAGATTTTCATCGCAATCAGCAACGCAGCGAAGAGGAGAAGATTCCGAGTAATGTATAAAGGGAAAGGGGAAATTAAAAAGGGTAGGATTATGCAGGTAATGGAAAGAGATCCATAGTGGTTGAGTTGAGAAAAGAGGGAATGAAGTTATGGGTATCAGAAACTGCAATTGGGTTGAGGAAGAAGAAGATACGGAAGTTGGAACTGCAATGGATGTAGAGAAATGTGAAAGACTTACTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

mRNA sequence

ATGAATCCAAACCATGGCAATGAAACAGATACTCCCACTAGATTTTCATCGCAATCAGCAACGCAGCGAAGAGGAGAAGATTCCGAAAACTGCAATTGGGTTGAGGAAGAAGAAGATACGGAAGTTGGAACTGCAATGGATGTAGAGAAATGTGAAAGACTTACTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

Coding sequence (CDS)

ATGAATCCAAACCATGGCAATGAAACAGATACTCCCACTAGATTTTCATCGCAATCAGCAACGCAGCGAAGAGGAGAAGATTCCGAAAACTGCAATTGGGTTGAGGAAGAAGAAGATACGGAAGTTGGAACTGCAATGGATGTAGAGAAATGTGAAAGACTTACTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

Protein sequence

MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSMEAMEIPKEVLIWG*

Homology

[Close]

BLAST of CsGy6G023985 vs. NCBI nr
Match: KGN48174.1 (hypothetical protein Csa_004128 [Cucumis sativus])

HSP 1 Score: 149 bits (376), Expect = 2.99e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM 60
          MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM
Sbjct: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM 60

Query: 61 EAMEIPKEVLIWG 73
          EAMEIPKEVLIWG
Sbjct: 61 EAMEIPKEVLIWG 73

[Close]

BLAST of CsGy6G023985 vs. ExPASy TrEMBL
Match: A0A0A0KH81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446350 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 1.45e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM 60
          MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM
Sbjct: 1  MNPNHGNETDTPTRFSSQSATQRRGEDSENCNWVEEEEDTEVGTAMDVEKCERLTEIRSM 60

Query: 61 EAMEIPKEVLIWG 73
          EAMEIPKEVLIWG
Sbjct: 61 EAMEIPKEVLIWG 73

The following BLAST results are available for this feature:

BLAST of CsGy6G023985 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G023985 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48174.1	2.99e-45	100.00	hypothetical protein Csa_004128 [Cucumis sativus]	[more]

BLAST of CsGy6G023985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH81	1.45e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446350 PE=4 SV=1	[more]

BLAST of CsGy6G023985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G023985.1	CsGy6G023985.1	mRNA