CsGy6G023950 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G023950
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 23940743 .. 23942751 (+)
RNA-Seq Expression	CsGy6G023950
Synteny	CsGy6G023950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCGACAACAACCTATCTTCAAAGACGCAAAGGGATTTGCCGGTTATCAGGTGCGCTAGCGCGATCGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTGGAGTTTGCAGTGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAGAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTCTTATTCTCACCCACATAGACAACCAAGTGACCCTTGGGGACGTCTCGCGGGATGAAGCAATCCTCATGCAAGGGAGACCACAAAACCCATTGGCAGCAGTGCTCACAGGCTGTGCAAGGTACAACTTTACTCCCTATCTTCCTCCATTTGTTTGCACATGCTCTTATAAACCTCCCCTTCTTCATATTCAGTATGTAGCTGTAGCTAGTGAATTTGAGAGAAAGAGAGATAGAGAGAGAGGTATGGTATTAAAGAGAAGCTGATAGGTATATATAAGAGTGGATGGAGAAGACTATTAAATGGTTGACATGATAGATATAGCTAAGCAGTGGGCTTCGTTTCTGTATGGCATTTTCTCTTTGACAGTGCATTTTATATTATAGTAGATGCACCTTTGCCGTGCTGTACCGATTTACTTTATTATATTATTGCATCTCTAAATGATACGAATTGTACGAACATTCATGGCATAGTTTTGAGATGAGAGATTTTATATATTCAAATATAGAAAAATATTATACTTTCCATATGGGGAAGAGAGAGATAGATGGATCTGCCATATGAAATCTCTTTCTTCTTTTGGCAAAGCATGGTGTAATGGTTGACTGATTTTTTTCCCCAAAGTTCTTGTAGTTAAATTTGTAATGGACCCACATGATTGGAGTGGACAAGAGATAAGATTTGAAAGAGGGGATGGAGATAACTTTCTTGGGCTTAGTGGCGATCCCACTTATTTCTATGACTTTTAAGTTTTAAGCTTGGATATTGTAGAATATCAATTTGTTCACACTCATAGAGGTGATTTCATCTCTTCTAAGCCACTTTTTATTGATAAACTTCATGCATTATTGCTCATGGAAGATGAATTTTCATGGTAGATAACTTTTTGGATAACTGTATGATCATTGTTATTGACCACTATGAGTGCTCATCTTTATTTGGTAGTTGCTTTGATTTTAGGCCCCAAAAACTATGTTTCTCGTTGAAAAACAAGGGAATTATGGATATTGATGTTTATTCAAATTATCTTGGTGTTGGGAGCACTTCCTACAAATTTTTTTGTCTGAAATAGAAAAAGGAAATGACAATGTACTACATAGTAATAACTGCAACTAACTTTTTGAAAAAAGATATCACTGTTCTTTCAAATCTAAAAAATTAGTGGGATCTATTATTCTACAGTAGAAACAAACTACAAAATAATATACATTTGCTTAGAAATAAACCCCATAAGAAAGTAGACACGCTCCTATACCATACTTAGTAAATAGCCTTAGCCAAGTTTCATTCTTTTGCATAACCATTTCAACGTAGTTAATTTGACAATATTGATACGTCAGAATCAGCATAAAGCAAAGTGTGTATATCTTATGAAAAAAAATACATCATCACTTGTCTTATTCATCATAGCTCTTGAGTCATATTTAAATTGTTGCTCTTATGACTTATCTTTTTTTTTTTTTACATATTTGGATTGATTTGAGCGCACCATGAGATGTTAAGTACTTCATCAGAATCTTTATATCTATTTTATTATGAAGAATTTGGTTTTGGTGTACTATAGCCGTACAGTTATGTTTATTTGAAACAGTACCTTATGGCCTATGGGATTCTTATCTTAATATTATGCAGAGAAAGCAGCTGCATCCATTTTTCTTTCATCTGCCGCAGAAGGTTTTGTTTTGGGATAAGCTTCTCTGCAGCATTACATCTGGGTGCAGGTGATGGGCCACTCTCACTCATACATAACTTTTATTTCAGTTTTTCAAACCTCTTTCTTCTTGAACTTCAATAA

mRNA sequence

ATGAAATTCGACAACAACCTATCTTCAAAGACGCAAAGGGATTTGCCGGTTATCAGGTGCGCTAGCGCGATCGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTGGAGTTTGCAGTGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAGAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTCTTATTCTCACCCACATAGACAACCAAGTGACCCTTGGGGACGTCTCGCGGGATGAAGCAATCCTCATGCAAGGGAGACCACAAAACCCATTGGCAGCAGTGCTCACAGGCTGTGCAAGAGAAAGCAGCTGCATCCATTTTTCTTTCATCTGCCGCAGAAGGTTTTGTTTTGGGATAAGCTTCTCTGCAGCATTACATCTGGGTGCAGGTGATGGGCCACTCTCACTCATACATAACTTTTATTTCAGTTTTTCAAACCTCTTTCTTCTTGAACTTCAATAA

Coding sequence (CDS)

ATGAAATTCGACAACAACCTATCTTCAAAGACGCAAAGGGATTTGCCGGTTATCAGGTGCGCTAGCGCGATCGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTGGAGTTTGCAGTGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAGAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTCTTATTCTCACCCACATAGACAACCAAGTGACCCTTGGGGACGTCTCGCGGGATGAAGCAATCCTCATGCAAGGGAGACCACAAAACCCATTGGCAGCAGTGCTCACAGGCTGTGCAAGAGAAAGCAGCTGCATCCATTTTTCTTTCATCTGCCGCAGAAGGTTTTGTTTTGGGATAAGCTTCTCTGCAGCATTACATCTGGGTGCAGGTGATGGGCCACTCTCACTCATACATAACTTTTATTTCAGTTTTTCAAACCTCTTTCTTCTTGAACTTCAATAA

Protein sequence

MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRVIEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSFICRRRFCFGISFSAALHLGAGDGPLSLIHNFYFSFSNLFLLELQ*

Homology

[Close]

BLAST of CsGy6G023950 vs. NCBI nr
Match: KAE8647397.1 (hypothetical protein Csa_003472 [Cucumis sativus])

HSP 1 Score: 330 bits (845), Expect = 6.99e-114
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60
           MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV
Sbjct: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60

Query: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF 120
           IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF
Sbjct: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF 120

Query: 121 ICRRRFCFGISFSAALHLGAGDGPLSLIHNFYFSFSNLFLLELQ 164
           ICRRRFCFGISFSAALHLGAGDGPLSLIHNFYFSFSNLFLLELQ
Sbjct: 121 ICRRRFCFGISFSAALHLGAGDGPLSLIHNFYFSFSNLFLLELQ 164

[Close]

BLAST of CsGy6G023950 vs. NCBI nr
Match: TYK05877.1 (hypothetical protein E5676_scaffold432G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (524), Expect = 7.38e-65
Identity = 107/123 (86.99%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60
           MKFDNNLSSKTQRDLPV+RCAS IDNTKEKVLITRNAEFGV SEIKLILCLIQQCLEQRV
Sbjct: 1   MKFDNNLSSKTQRDLPVVRCASTIDNTKEKVLITRNAEFGVRSEIKLILCLIQQCLEQRV 60

Query: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFS- 120
           IEKANFDYKPSLILT+IDNQVTL DVS DEAILMQ RPQNPLAAVLTGCAR +   +F  
Sbjct: 61  IEKANFDYKPSLILTYIDNQVTLRDVSWDEAILMQRRPQNPLAAVLTGCARYNFTSYFPP 120

Query: 121 FIC 122
           F+C
Sbjct: 121 FVC 123

[Close]

BLAST of CsGy6G023950 vs. NCBI nr
Match: KAA0047241.1 (hypothetical protein E6C27_scaffold908G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (518), Expect = 1.04e-64
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60
           MKFDNNLSSKTQRDLPV+RCAS IDNTKEKVLITRNAEFGV SEIKLILCLIQQCLEQRV
Sbjct: 1   MKFDNNLSSKTQRDLPVVRCASTIDNTKEKVLITRNAEFGVRSEIKLILCLIQQCLEQRV 60

Query: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCAR 111
           IEKANFDYKPSLILT+IDNQVTL DVS DEAILMQ RPQNPLAAVLTGCAR
Sbjct: 61  IEKANFDYKPSLILTYIDNQVTLRDVSWDEAILMQRRPQNPLAAVLTGCAR 111

[Close]

BLAST of CsGy6G023950 vs. NCBI nr
Match: KAF8403084.1 (hypothetical protein HHK36_011178 [Tetracentron sinense])

HSP 1 Score: 104 bits (259), Expect = 2.13e-22
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 8   SSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRVIEKANFD 67
           +SKTQRD  V R   A  N KE VL+  +A+FGV +E+ L+L LI+QCL++R++E+ANFD
Sbjct: 52  TSKTQRDPLVSRRVGAAKNAKENVLVAGDAKFGVGAELVLLLSLIEQCLKERMVEQANFD 111

Query: 68  YKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFS 119
            KP ++ T+ID Q+TLGD+  D  + +Q  PQ+P + ++T C RE    H S
Sbjct: 112 DKPLILFTYIDYQMTLGDIFWDGVLFVQASPQSP-STMVTNCRREDLGTHLS 162

[Close]

BLAST of CsGy6G023950 vs. NCBI nr
Match: EXC16195.1 (hypothetical protein L484_024366 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 8.23e-13
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 25 DNTKEKVLITRNAEFGVCS-EIKLILCLIQQCLEQRVIEKANFDYKPSLILTHIDNQVTL 84
          ++ +EK L+  +AEFGV S E+KLI  L++QCLE+RVIE+ +FD KP ++L +ID+QVTL
Sbjct: 23 NDVEEKALVAGDAEFGVSSGEVKLIASLVKQCLEERVIEQGDFDDKPLVVLAYIDHQVTL 82

Query: 85 GDVSRD 89
           D+  D
Sbjct: 83 WDILWD 88

[Close]

BLAST of CsGy6G023950 vs. ExPASy TrEMBL
Match: A0A0A0KEQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446320 PE=4 SV=1)

HSP 1 Score: 281 bits (719), Expect = 2.25e-94
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60
           MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV
Sbjct: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60

Query: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF 120
           IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF
Sbjct: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF 120

Query: 121 ICRRRFCFGISFSAALHLGA 140
           ICRRRFCFGISFSAALHLGA
Sbjct: 121 ICRRRFCFGISFSAALHLGA 140

[Close]

BLAST of CsGy6G023950 vs. ExPASy TrEMBL
Match: A0A5D3C230 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold432G00080 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 3.57e-65
Identity = 107/123 (86.99%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60
           MKFDNNLSSKTQRDLPV+RCAS IDNTKEKVLITRNAEFGV SEIKLILCLIQQCLEQRV
Sbjct: 1   MKFDNNLSSKTQRDLPVVRCASTIDNTKEKVLITRNAEFGVRSEIKLILCLIQQCLEQRV 60

Query: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFS- 120
           IEKANFDYKPSLILT+IDNQVTL DVS DEAILMQ RPQNPLAAVLTGCAR +   +F  
Sbjct: 61  IEKANFDYKPSLILTYIDNQVTLRDVSWDEAILMQRRPQNPLAAVLTGCARYNFTSYFPP 120

Query: 121 FIC 122
           F+C
Sbjct: 121 FVC 123

[Close]

BLAST of CsGy6G023950 vs. ExPASy TrEMBL
Match: A0A5A7U0W9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00340 PE=4 SV=1)

HSP 1 Score: 204 bits (518), Expect = 5.02e-65
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60
           MKFDNNLSSKTQRDLPV+RCAS IDNTKEKVLITRNAEFGV SEIKLILCLIQQCLEQRV
Sbjct: 1   MKFDNNLSSKTQRDLPVVRCASTIDNTKEKVLITRNAEFGVRSEIKLILCLIQQCLEQRV 60

Query: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCAR 111
           IEKANFDYKPSLILT+IDNQVTL DVS DEAILMQ RPQNPLAAVLTGCAR
Sbjct: 61  IEKANFDYKPSLILTYIDNQVTLRDVSWDEAILMQRRPQNPLAAVLTGCAR 111

[Close]

BLAST of CsGy6G023950 vs. ExPASy TrEMBL
Match: W9RWZ4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024366 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.99e-13
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 25 DNTKEKVLITRNAEFGVCS-EIKLILCLIQQCLEQRVIEKANFDYKPSLILTHIDNQVTL 84
          ++ +EK L+  +AEFGV S E+KLI  L++QCLE+RVIE+ +FD KP ++L +ID+QVTL
Sbjct: 23 NDVEEKALVAGDAEFGVSSGEVKLIASLVKQCLEERVIEQGDFDDKPLVVLAYIDHQVTL 82

Query: 85 GDVSRD 89
           D+  D
Sbjct: 83 WDILWD 88

[Close]

BLAST of CsGy6G023950 vs. ExPASy TrEMBL
Match: A0A151TV08 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_010126 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.43e-07
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 41  VCSEIKLILCLIQQCLEQRVIEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQN 100
           VC+EI LIL LIQQ LE+R++E+ N D    ++L+H+ NQVTL  +  D    M G P  
Sbjct: 1   VCNEIILILSLIQQGLEERMVEQRNVDDISLMLLSHVHNQVTLWHIVGDGVSFMHGCPHF 60

The following BLAST results are available for this feature:

BLAST of CsGy6G023950 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G023950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647397.1	6.99e-114	100.00	hypothetical protein Csa_003472 [Cucumis sativus]	[more]
TYK05877.1	7.38e-65	86.99	hypothetical protein E5676_scaffold432G00080 [Cucumis melo var. makuwa]	[more]
KAA0047241.1	1.04e-64	93.69	hypothetical protein E6C27_scaffold908G00340 [Cucumis melo var. makuwa]	[more]
KAF8403084.1	2.13e-22	47.32	hypothetical protein HHK36_011178 [Tetracentron sinense]	[more]
EXC16195.1	8.23e-13	53.03	hypothetical protein L484_024366 [Morus notabilis]	[more]

BLAST of CsGy6G023950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEQ0	2.25e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446320 PE=4 SV=1	[more]
A0A5D3C230	3.57e-65	86.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0W9	5.02e-65	93.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
W9RWZ4	3.99e-13	53.03	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024366 PE=4 SV=1	[more]
A0A151TV08	2.43e-07	47.54	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_010126 PE=4 S...	[more]

BLAST of CsGy6G023950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G023950.2	CsGy6G023950.2	mRNA