CsGy6G023780 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G023780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L12
Location	Gy14Chr6: 23814838 .. 23815338 (-)
RNA-Seq Expression	CsGy6G023780
Synteny	CsGy6G023780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCCAAGCTCGATCCTTCTCAGGTCGTCGAGGTTTTCGTCCGAGTTACCGGAGGTGAGGTCGGAGCCGCCAGTTCTCTCGCTCCCAAAATCGGTCCTCTAGGTCTCTCCCCAAAGAAGATCGGAGAAGACATTGCCAAGGAGACTGCCAAGGAATGGAAGGGTCTCAGAGTTACCGTCAAGCTTACTGTCCAGAACCGTCAAGCCAAGGTCTCTGTGGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAAGAGCCCGAACGCGACCGCAAGAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTTATTGAGATTGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCAGTGGATCCGTTAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGGTGTACGGTCGATGGTAAGGACCCGAAGGATTTGCAGCAGGAAATTACTGATGGGGATGTTGAAATTCCTCAGGATTGA

mRNA sequence

ATGCCGCCCAAGCTCGATCCTTCTCAGGTCGTCGAGGTTTTCGTCCGAGTTACCGGAGGTGAGGTCGGAGCCGCCAGTTCTCTCGCTCCCAAAATCGGTCCTCTAGGTCTCTCCCCAAAGAAGATCGGAGAAGACATTGCCAAGGAGACTGCCAAGGAATGGAAGGGTCTCAGAGTTACCGTCAAGCTTACTGTCCAGAACCGTCAAGCCAAGGTCTCTGTGGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAAGAGCCCGAACGCGACCGCAAGAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTTATTGAGATTGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCAGTGGATCCGTTAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGGTGTACGGTCGATGGTAAGGACCCGAAGGATTTGCAGCAGGAAATTACTGATGGGGATGTTGAAATTCCTCAGGATTGA

Coding sequence (CDS)

ATGCCGCCCAAGCTCGATCCTTCTCAGGTCGTCGAGGTTTTCGTCCGAGTTACCGGAGGTGAGGTCGGAGCCGCCAGTTCTCTCGCTCCCAAAATCGGTCCTCTAGGTCTCTCCCCAAAGAAGATCGGAGAAGACATTGCCAAGGAGACTGCCAAGGAATGGAAGGGTCTCAGAGTTACCGTCAAGCTTACTGTCCAGAACCGTCAAGCCAAGGTCTCTGTGGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAAGAGCCCGAACGCGACCGCAAGAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTTATTGAGATTGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCAGTGGATCCGTTAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGGTGTACGGTCGATGGTAAGGACCCGAAGGATTTGCAGCAGGAAATTACTGATGGGGATGTTGAAATTCCTCAGGATTGA

Protein sequence

MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD*

Homology

[Close]

BLAST of CsGy6G023780 vs. ExPASy Swiss-Prot
Match: P50883 (60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 8.0e-80
Identity = 148/166 (89.16%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy Swiss-Prot
Match: Q9FF52 (60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.4e-79
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy Swiss-Prot
Match: Q9LFH5 (60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-79
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy Swiss-Prot
Match: O50003 (60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.0e-78
Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAK+L+G+VKEIL TCVSVGCTVDGKDPKDLQQEI DGDVEIP D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy Swiss-Prot
Match: P0CT83 (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.1e-64
Identity = 120/166 (72.29%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR MR +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGT  SVGCTVDGK+P D+Q+EI +G++EIPQ+
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

[Close]

BLAST of CsGy6G023780 vs. NCBI nr
Match: XP_004143249.1 (60S ribosomal protein L12-1 [Cucumis sativus] >XP_008442680.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >XP_008449248.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >KAA0044012.1 60S ribosomal protein L12 [Cucumis melo var. makuwa] >KAA0047260.1 60S ribosomal protein L12 [Cucumis melo var. makuwa] >KGN48153.1 hypothetical protein Csa_003143 [Cucumis sativus] >TYK25128.1 60S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 321 bits (823), Expect = 1.84e-110
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. NCBI nr
Match: XP_004137822.1 (60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetical protein Csa_001517 [Cucumis sativus])

HSP 1 Score: 320 bits (819), Expect = 7.51e-110
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. NCBI nr
Match: XP_038883892.1 (60S ribosomal protein L12-1-like [Benincasa hispida])

HSP 1 Score: 318 bits (816), Expect = 2.15e-109
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. NCBI nr
Match: XP_022935531.1 (60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S ribosomal protein L12-1-like [Cucurbita maxima] >XP_038903166.1 60S ribosomal protein L12-1 [Benincasa hispida] >KAG6580604.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017359.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317 bits (812), Expect = 8.77e-109
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. NCBI nr
Match: XP_022950157.1 (60S ribosomal protein L12-3 [Cucurbita moschata] >XP_023005871.1 60S ribosomal protein L12-3 [Cucurbita maxima] >XP_023540179.1 60S ribosomal protein L12-3 [Cucurbita pepo subsp. pepo] >KAG6596472.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028017.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316 bits (810), Expect = 1.77e-108
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy TrEMBL
Match: A0A1S3BLM0 (60S ribosomal protein L12-1 OS=Cucumis melo OX=3656 GN=LOC103491184 PE=3 SV=1)

HSP 1 Score: 321 bits (823), Expect = 8.93e-111
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy TrEMBL
Match: A0A5D3DNF2 (60S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002530 PE=3 SV=1)

HSP 1 Score: 321 bits (823), Expect = 8.93e-111
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy TrEMBL
Match: A0A0A0KF33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445170 PE=3 SV=1)

HSP 1 Score: 321 bits (823), Expect = 8.93e-111
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy TrEMBL
Match: A0A0A0LAX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G739040 PE=3 SV=1)

HSP 1 Score: 320 bits (819), Expect = 3.64e-110
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. ExPASy TrEMBL
Match: A0A6J1J2K8 (60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=3 SV=1)

HSP 1 Score: 317 bits (812), Expect = 4.25e-109
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of CsGy6G023780 vs. TAIR 10
Match: AT2G37190.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 297.7 bits (761), Expect = 5.7e-81
Identity = 148/166 (89.16%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of CsGy6G023780 vs. TAIR 10
Match: AT5G60670.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 297.0 bits (759), Expect = 9.7e-81
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of CsGy6G023780 vs. TAIR 10
Match: AT3G53430.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-80
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

The following BLAST results are available for this feature:

BLAST of CsGy6G023780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P50883	8.0e-80	89.16	60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2	[more]
Q9FF52	1.4e-79	88.55	60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1	[more]
Q9LFH5	1.8e-79	88.55	60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1	[more]
O50003	2.0e-78	89.76	60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1	[more]
P0CT83	6.1e-64	72.29	60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of CsGy6G023780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143249.1	1.84e-110	100.00	60S ribosomal protein L12-1 [Cucumis sativus] >XP_008442680.1 PREDICTED: 60S rib...	[more]
XP_004137822.1	7.51e-110	99.40	60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetical protein C...	[more]
XP_038883892.1	2.15e-109	98.80	60S ribosomal protein L12-1-like [Benincasa hispida]	[more]
XP_022935531.1	8.77e-109	98.19	60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S riboso...	[more]
XP_022950157.1	1.77e-108	97.59	60S ribosomal protein L12-3 [Cucurbita moschata] >XP_023005871.1 60S ribosomal p...	[more]

BLAST of CsGy6G023780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLM0	8.93e-111	100.00	60S ribosomal protein L12-1 OS=Cucumis melo OX=3656 GN=LOC103491184 PE=3 SV=1	[more]
A0A5D3DNF2	8.93e-111	100.00	60S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KF33	8.93e-111	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445170 PE=3 SV=1	[more]
A0A0A0LAX8	3.64e-110	99.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G739040 PE=3 SV=1	[more]
A0A6J1J2K8	4.25e-109	98.19	60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=...	[more]

BLAST of CsGy6G023780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37190.1	5.7e-81	89.16	Ribosomal protein L11 family protein	[more]
AT5G60670.1	9.7e-81	88.55	Ribosomal protein L11 family protein	[more]
AT3G53430.1	1.3e-80	88.55	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 13..145 e-value: 1.8E-56 score: 203.6
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..166
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 9..146 score: 15.715538
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 13..144 e-value: 9.40952E-52 score: 159.539
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 82..164 e-value: 9.1E-41 score: 139.9
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..149
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 75..144 e-value: 5.8E-16 score: 58.8
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 1..81 e-value: 9.4E-35 score: 120.5
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 1..87
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 11..70 e-value: 1.2E-19 score: 69.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..166
None	No IPR available	PANTHER	PTHR11661:SF27	60S RIBOSOMAL PROTEIN L12	coord: 1..166
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 131..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G023780.1	CsGy6G023780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome