CsGy6G023380 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G023380
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr6: 23608605 .. 23610166 (-)
RNA-Seq ExpressionCsGy6G023380
SyntenyCsGy6G023380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCTCCTTCTCCTTCTCCCTTGCTTGCTTAGGAGGGTGAAGGTGAGAAAAAATATCAAAAGGTGAGTTTGGGTTGTTAACCTCTCAATTTAGTTCACCTTTGTTATTGTCTCATTAATTATATATATACTTATTGTTACTATATCAATCATCATGATATGTTGTGAGTTCTTTTACTATACCATCACGCGTGTTTAAGAAATGTTGGGTTTAGAATTTGGTGAAAGATGGTCGAGTGAGATTTGTTGTATGGATTGAAACTTAAGGCCGAGTGGTTAGACACTAAGTTGATTGTGAAGTTTGGAGTCAATATGTTGAAGTTAAGAAGTTCTATATTTGAGGTGTAGAGTTTGAAAAATAAAATTATTTGATAAATGTACAAACGCTTCCTAAATGATCACAAGAGAGACGTTTGTGTGTTTAAGAAATTAAAGTATTGGGTTTAAAGTGCAAGTTTAAGAAAATAGTTTATTATATGTTTAGAAATTGGTGCCGGATTGAGTGAGGTTTGTTTACGATTGAAACTTATGAGGTGTTTAGGCTCTAGGTTGAAAATTAAGAAGTTTATGTTTGAGATGTAGAGTTGTTAAGGTAAAATTACTCGATAAACGTAAATACAGTGGATAAAGAGAAGATAAAGTTTTTTGATAAATGTGTAAACTTAACACACAATTACCATTAAAATTCAATTGTTTAACACCGATATACATATAAAAAACAATCAAATAAATTAACAAACACTTAATTTTATTAACTCGATCATAATCGACACAATTTTTTAGTTTTCTTTTGTATGATTATTGTAGTAATGAAATCTGACACGTGCGAGGCATGTCATGTGACCCGATCGATAATGGGTCCACTCATAAATCATATTGGGCCGTTTATATTTCAGCCCATAGAAAACATTATGGGCCGAGCCCAATAATACTATTACTCTATTTTTTTCATTGATGTGATTTATAGTATAGTTTTTCATTTGCATATATCTTCACAGGTTTAATTTCATTTCAATATTTTCTATCCTAATTATACATTTTAATACCAATACTGCCTAATTTATTTCAACAATCATGATACCTAAGTAAATAAAGTTAAACATAACAATTTCACTCGTTTTCCACTCAGGGATGGATCCAAGCAATTCAAAAATCGATCCATCAGGTTCGTTTCAATTTTTTTCAAACTTTTAGATTTATCGTTAGTTTAATATAACCGTTTAGTGAACGATTGAAATATTTGTATAATAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAGGAAATGTGTAATTAATGACCAAAGACTTGAATGTCT

mRNA sequence

CCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCTCCTTCTCCTTCTCCCTTGCTTGCTTAGGAGGGTGAAGGTGAGAAAAAATATCAAAAGGGATGGATCCAAGCAATTCAAAAATCGATCCATCAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAGGAAATGTGTAATTAATGACCAAAGACTTGAATGTCT

Coding sequence (CDS)

ATGGATCCAAGCAATTCAAAAATCGATCCATCAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAG

Protein sequence

MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGKYKSLRKEYNEAWEKERRES*
Homology
BLAST of CsGy6G023380 vs. NCBI nr
Match: KGN48117.1 (hypothetical protein Csa_003321 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 6.76e-52
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90
          EMEVFKGLCGKYKSLRKEYNEAWEKERRES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

BLAST of CsGy6G023380 vs. NCBI nr
Match: KAG7035874.1 (hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.6 bits (192), Expect = 9.50e-17
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MDPS+SKIDPSEF+ V  EL+ L++E+E K KK++EMKK+IE  K+ LE+K    K SR+
Sbjct: 1  MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEK----KASRE 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90
          EME  K LC ++ SLRKEY E   K+ RES
Sbjct: 61 EMESLKRLCEEFNSLRKEYYETLGKQTRES 86

BLAST of CsGy6G023380 vs. NCBI nr
Match: XP_022958532.1 (uncharacterized protein LOC111459736 [Cucurbita moschata])

HSP 1 Score: 63.5 bits (153), Expect = 1.29e-09
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 12  EFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGK 71
           EF+   SEL+ L++E+E K KK++EMKK+IEG K+ LE+K    K SR+EME  K LC +
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEK----KASREEMESLKRLCEE 222

Query: 72  YKSLRKEYNEAWEKERRES 90
           Y SLRKEY E   K+ RES
Sbjct: 223 YNSLRKEYYETLGKQTRES 237

BLAST of CsGy6G023380 vs. NCBI nr
Match: PON89126.1 (hypothetical protein TorRG33x02_149890 [Trema orientale])

HSP 1 Score: 50.8 bits (120), Expect = 8.62e-06
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 4  SNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEME 63
          SN  + PS ++  PSEL+ L+++ EEK  ++EE+K++IE  K+ LEKKK+ V    +++E
Sbjct: 6  SNVTLSPSAYQKAPSELEELQKQHEEKASRIEELKRRIETMKLRLEKKKNEV--PEEKIE 65

Query: 64 VFKGLCGKYKSLRKEYNEAWEKERRES 90
            K L  +Y  +R EYN    +E  ES
Sbjct: 66 AVKTLNERYNDMRDEYNALLSQELLES 90

BLAST of CsGy6G023380 vs. NCBI nr
Match: KAF9844917.1 (hypothetical protein H0E87_018911 [Populus deltoides])

HSP 1 Score: 50.1 bits (118), Expect = 1.65e-05
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 2  DPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKE 61
          DPSN+    +      SEL+ L+R+ EEK +K+EE+K +I+  K+ LEKK  G    +KE
Sbjct: 6  DPSNNSFSGN-VRKNSSELQELQRQHEEKTRKIEELKSQIDSVKLDLEKKMKGPSGDKKE 65

Query: 62 MEVFKGLCGKYKSLRKEYNEAWEKERRE 89
            VFK L  KY SLR+EYN    ++ RE
Sbjct: 66 --VFKSLSDKYNSLREEYNALLAEKSRE 90

BLAST of CsGy6G023380 vs. ExPASy TrEMBL
Match: A0A0A0KIA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 3.27e-52
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90
          EMEVFKGLCGKYKSLRKEYNEAWEKERRES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

BLAST of CsGy6G023380 vs. ExPASy TrEMBL
Match: A0A6J1H234 (uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC111459736 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.24e-10
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 12  EFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGK 71
           EF+   SEL+ L++E+E K KK++EMKK+IEG K+ LE+K    K SR+EME  K LC +
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEK----KASREEMESLKRLCEE 222

Query: 72  YKSLRKEYNEAWEKERRES 90
           Y SLRKEY E   K+ RES
Sbjct: 223 YNSLRKEYYETLGKQTRES 237

BLAST of CsGy6G023380 vs. ExPASy TrEMBL
Match: A0A2P5EUD0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_149890 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.17e-06
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 4  SNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEME 63
          SN  + PS ++  PSEL+ L+++ EEK  ++EE+K++IE  K+ LEKKK+ V    +++E
Sbjct: 6  SNVTLSPSAYQKAPSELEELQKQHEEKASRIEELKRRIETMKLRLEKKKNEV--PEEKIE 65

Query: 64 VFKGLCGKYKSLRKEYNEAWEKERRES 90
            K L  +Y  +R EYN    +E  ES
Sbjct: 66 AVKTLNERYNDMRDEYNALLSQELLES 90

BLAST of CsGy6G023380 vs. ExPASy TrEMBL
Match: A0A2K1Z2Z1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G050500 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.59e-05
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 0

Query: 18 SELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGKYKSLRK 77
          SEL+ L+R+ EEK +K+EE+K +I+  K+ LEKK  G    +KE  VFK L  KY SLR+
Sbjct: 21 SELQALQRQHEEKTRKIEELKSQIDSVKLDLEKKMKGPSGDKKE--VFKSLSDKYNSLRE 80

Query: 78 EYNEAWEKERRE 89
          EYN    ++ RE
Sbjct: 81 EYNALLAEKSRE 90

BLAST of CsGy6G023380 vs. ExPASy TrEMBL
Match: A0A1R3IGR8 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12215 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.32e-05
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 18 SELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEM-EVFKGLCGKYKSLR 77
          SEL+TL+++ EEK +K++E+KK+IE  K CLE++K   K +  E  E F  L  KY SLR
Sbjct: 2  SELETLQKQHEEKTQKIQELKKQIENAKQCLEEQKKKKKENPDEKKETFNNLSQKYNSLR 61

Query: 78 KEYN 80
           EYN
Sbjct: 62 DEYN 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN48117.16.76e-52100.00hypothetical protein Csa_003321 [Cucumis sativus][more]
KAG7035874.19.50e-1756.67hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022958532.11.29e-0954.43uncharacterized protein LOC111459736 [Cucurbita moschata][more]
PON89126.18.62e-0640.23hypothetical protein TorRG33x02_149890 [Trema orientale][more]
KAF9844917.11.65e-0544.32hypothetical protein H0E87_018911 [Populus deltoides][more]
Match NameE-valueIdentityDescription
A0A0A0KIA63.27e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1[more]
A0A6J1H2346.24e-1054.43uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC1114597... [more]
A0A2P5EUD04.17e-0640.23Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_149890 PE=4 SV... [more]
A0A2K1Z2Z11.59e-0548.61Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G050500 PE=4 ... [more]
A0A1R3IGR89.32e-0550.00Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12215 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 20..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G023380.2CsGy6G023380.2mRNA