CsGy6G022510 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G022510
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA polymerase epsilon subunit 3
LocationGy14Chr6: 22960762 .. 22964836 (-)
RNA-Seq ExpressionCsGy6G022510
SyntenyCsGy6G022510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAGCCCACAAAACTGATCGGGCCGCCGTAACCAGAACGATAATAATGGCGGGAAACAGATTCGAGGAGGCCGCCGGCACTCTTGACGCCGAAGAACCTTGAAGAAGAAGAAGACGGTGAGATATCGTTAAGGAAATAGAGAAAGATGGAGAAAAAAATAGGTGGCGGAAATGAAGAGCTTCCAAAGACTATAGTTCGTCGAGTGGTCAAAGAGAAGCTTTCTCAGTGCTCTCGTGACCAGGACATCTCCGTCAACAAAGATTCGCTTCTTGCGTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACGTAAGTTCCGCAATCTGCCTTAACATGTTTAGCTGTGAATGAAATTCTATCCATCCTGATGTTCGAAATTAGGGCTCGTTGTTTCTCTGATGTTTGCCTTTAAAACGAAAACGAAATAGATTCAAGCGATAAATCTATTGTTGTTATGGCGCTATGGTTAACGAAAATGTTGCTTTGTATTAGTTAATTCTTTTGTTTGTATTAACTGGTAGATTTCTAAGCAGGGCGAATGATATATGCAAGGAATCAAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTTTAGAAGATATGGAGTTTCCCGAATTGGTTAGGCCTCTCAAAGCCTCCCTCGACGGTGAGTAAGCTTCCTATCCCTGTGTTTAACCAATATATCCAGTTGCACTTTAGTTAAACACATGAATCTTATTTTCGATTAGGTTTTCTGCTTACCCTTTTTTCACTATTTGGTTTCCGAATGGTCTTTATGCATTTTCTCGATTTTCCTGCCTAAAAAAGCCTTGCATTGTTAGACGTTCAATCTCGACTTTAAACAAATTTCAGTAACACATCAGTAGAGTGGTTAAATAAATCCATATGCAAAGAGGATGCTGACATTATAAGACGAATCCTTATCATTTCAAATATACAAGATGAGTGAATTTGGCACCATGGCAAGGATAGGACAGGCGTTCAATGTTGGAAAAATCAAGTGACTTCACTTTCTCTATAAGATACATAAATTACTCTTCTCGTTGCCAATTATGTTTTCTTTTTTGTTTAGTTTTGCGGGAGGGGGTTTCCTCTGCCCTGCCCTTAGGCTGTTCTTTTGGTTCTTTTGATATTTATGTTTTTTTTAAATGAAAGTTCATAATATCTAAATCTAAAAGAGGCACCATCTCGAGGGACATCCTGGAACCTTTATTTTCTAATATTTAACAATGTAAAAGTGGATACATGGACACATTAGTATTTAATGCAAGTCTTAATGGCTGCCCTTAATCTTATATTACGCATGTAATATAAGAAGGTTGAATGAAATTCAACTCAGATTCCTTTCTTAGTTTTACTTCATTGAATTTTGATTCTGAGAGGAGCTGGCGAGCTCAAAGAACTAATGCATTCCTTTTATTAAAGGAGTATAGGATTTGATTAGATTGAATAAGCTCCTACAAAATAAATCTTCAAGTGTGTACAAATTCTTGGAAATTTTAGTTTGATGTCTTTTTATTTATCTGTATGTACAAATGCTATTGAGTATTGAGATATCGAGTTGCTTAAGCTTTGCTATGTTGCGATGAGTAAGAGATGGGATTTACTTTCTGGATTTCTTTTAGTACACACATAGTTAGAGCACTCCAAAGTGTCTGTAAAGTGAGCAAGAATATCTGTTTGCTAAGGTGTAAAACAAAACCTTGTTTATGGAATTCTGGAATAGTGGTATTTGACAACGTTTTTGTTTCGTAGTTGGATATTCGAGGATCGATATTGAGTCTGATCACACTTAACATTTTTGGATGGGGAGATGGATAAATTCTTGATGCTGCAATACAAGTTCCATGTGTAGATATTGTCTTACCCGTTGTTGTCATTGTTGCTTGCTTATTATTAGGCGAGGAATGAATTATAATGTCAAAGATAGTTTGTTTAAAATGTGAACGACTGCTGTACTGTGACTCGATTGTATGCAGACGACAATGCTAATCTCTGCCAGCTATGATTTTCAATCTCGTGTTTGCCAAATTCATGTTCACAATTATCCAATATTCGTTTTAAGATAAGCTAGCTGAACCTCTTTAATGATTTATTCATCATGCAACCTCTGTTTGGCTGAATACAGAATTCAGACGCAAGAATGCTGGAAAGAAGGCAGCTGCCTCCAGAGAAAAAGAAGCGAAAAAGAAGAGGAAGGTAGAAGAGCCAACAGTTGAAGGTACAGATGGTGAAAGTATAGAAGACGTTGGAAATGATGATAACGATGATAATGATGAAGACGAAGATGAAGATGAAAATAGAGCCAGTGATGACTGAGAAACATGATCTGTGTCTCTAGTTAGGTACTTGAAATGAGGTTACTCTACACTTGTACGTTATTTATTTTCAAATCAGAAAGAAACTATTTATGAGATTTTATACAAATCTTCTAGAAAAGGTTATCCTACACTTGCAGTTTGTATATTATGAACGGCAGCTTCACCTTTTAGCAAGTTCTATATCTCTTTGTTAGCATGGTTGGTTAAGAGAGTTTAAGGTTACGTCCACCCGTGAAAATGCAGTAGATCAATGGAGATAAAGAAAGTGGTCTCGTTTGATAACTTTTGGAGTTGTTTACATGTGTTGTGCAATTGTACTTAACACATGAAATTCATATTCTAATCTATAATGAAATAACGTGACAAAACCTATTTGTGATGAGTTAAGGGTGCTTAATTTAATTTTAACATTTTTTCTGCTATCATTACTGATGTTGATACTGCGTGACTTTTAGAAGTAGAGATAGCATAAACAATAGTAGTAAACCTTTTTATTCAACCCATTGAAAGATGGATTACTAATGTAATCATGGGTTAAATTACAAAAATGATATCTAAGCATGGAGTTGGCTCAATTATACTAAAGCTTGGTTCTACTTAAACCTTGGTAGTTTTTTTGGCTTTTGTTGAGAAATATACTTTGTACATGAACAAATTGAAACCAAAATTGCAATCTCTTGTTTTCAACTTTATGCCCTCAATTACACGCTTTTCTCTATGTCCTTAATTGTTAGATTTGTTCACTCAATTAATTTTTTCATCCATACATTCAAAAAAGGTCTTTAGGATAATTCTAACAGTTTAAACTTCAATAATATTCTCAATTGCTTGTAGTTAAACATCTTTAGCTCTACCTGGCCAATGCCAAATTGGTTCTAAAGTCAATTTTAAACGTACCCTTTTTACGCAAGGATGGAGCTATTACCATGTAAGCCAATACACATTCTCAAATTTGAGATCATTTTTACCACAGAAGAGATAAACGTATTTCTTGTTTAAAAGTAGGATGGAAAAAGAACAAAACCGGGGCAAAACACATTAATTAATTTGAAATGTAACCTAAAGTAAATATTGATAAAAACTAACAAACACATTACAAAGCCCATAAATTAGCTAGCTTCCACTTTTATCAATACTCAAGAATCTCTGGTCACGAGATGTTAGGTAGAGGGGGTGGCACCTCCGGCCGAAACCTTCTTGTTTGTTCCACGGCAGAACATTTGACAAGAACTAATATGGGCGATATCTGCGACCATGGCCACCGTGACCACCACCATGGCCACTGTCATGTGAATGTCTCCCCCTACTAGAACTGCCGCCGTTCTTACTGCCACTTCCGCCACCACTGCCTCCACTGCCGCCGCCACCACTTCTTGGATGTGGTGGAGGGGTTAGCATTTGTGATCCTGGTTGTTGCCTGCAAGAAGATAGGAAGCAGCTTTCAGCATGAGCCATCAGAGCAGAAGCTAAAGTATTAGATGCGGCAATTTACTCTAAGATGGATGGATTGTAGTTTTCAAATAGCTTCAACTAGAGAAATGAATTGGACAGAAGCTTCAAAACAAAAGGCAAACTGTATAAGCTAGAACTTCTTTAACAGAATTTACATCCCTAAGCTTCAGAAACTCTCGGGAGTAAAACGAATGAAAGAATTGTCCACTACAGTCAGGTATAATATAGGTGGAAAATGTAGAAAAAGAAGCACGAACTTACAAGACATAGCCAATCCGTCCAT

mRNA sequence

GAAAAAAGCCCACAAAACTGATCGGGCCGCCGTAACCAGAACGATAATAATGGCGGGAAACAGATTCGAGGAGGCCGCCGGCACTCTTGACGCCGAAGAACCTTGAAGAAGAAGAAGACGGTGAGATATCGTTAAGGAAATAGAGAAAGATGGAGAAAAAAATAGGTGGCGGAAATGAAGAGCTTCCAAAGACTATAGTTCGTCGAGTGGTCAAAGAGAAGCTTTCTCAGTGCTCTCGTGACCAGGACATCTCCGTCAACAAAGATTCGCTTCTTGCGTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACGGCGAATGATATATGCAAGGAATCAAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTTTAGAAGATATGGAGTTTCCCGAATTGGTTAGGCCTCTCAAAGCCTCCCTCGACGAATTCAGACGCAAGAATGCTGGAAAGAAGGCAGCTGCCTCCAGAGAAAAAGAAGCGAAAAAGAAGAGGAAGGTAGAAGAGCCAACAGTTGAAGGTACAGATGGTGAAAGTATAGAAGACGTTGGAAATGATGATAACGATGATAATGATGAAGACGAAGATGAAGATGAAAATAGAGCCAGTGATGACTGAGAAACATGATCTGTGTCTCTAGTTAGGTACTTGAAATGAGGTTACTCTACACTTGTACGTTATTTATTTTCAAATCAGAAAGAAACTATTTATGAGATTTTATACAAATCTTCTAGAAAAGGTTATCCTACACTTGCAGTTTGTATATTATGAACGGCAGCTTCACCTTTTAGCAAGTTCTATATCTCTTTGTTAGCATGGTTGGTTAAGAGAGTTTAAGGTTACGTCCACCCGTGAAAATGCAGTAGATCAATGGAGATAAAGAAAGTGGTCTCGTTTGATAACTTTTGGAGTTGTTTACATGTGTTGTGCAATTGTACTTAACACATGAAATTCATATTCTAATCTATAATGAAATAACGTGACAAAACCTATTTGTGATGAGTTAAGGGTGCTTAATTTAATTTTAACATTTTTTCTGCTATCATTACTGATGTTGATACTGCGTGACTTTTAGAAGTAGAGATAGCATAAACAATAGTAGTAAACCTTTTTATTCAACCCATTGAAAGATGGATTACTAATGTAATCATGGGTTAAATTACAAAAATGATATCTAAGCATGGAGTTGGCTCAATTATACTAAAGCTTGGTTCTACTTAAACCTTGGTAGTTTTTTTGGCTTTTGTTGAGAAATATACTTTGTACATGAACAAATTGAAACCAAAATTGCAATCTCTTGTTTTCAACTTTATGCCCTCAATTACACGCTTTTCTCTATGTCCTTAATTGTTAGATTTGTTCACTCAATTAATTTTTTCATCCATACATTCAAAAAAGGTCTTTAGGATAATTCTAACAGTTTAAACTTCAATAATATTCTCAATTGCTTGTAGTTAAACATCTTTAGCTCTACCTGGCCAATGCCAAATTGGTTCTAAAGTCAATTTTAAACGTACCCTTTTTACGCAAGGATGGAGCTATTACCATGTAAGCCAATACACATTCTCAAATTTGAGATCATTTTTACCACAGAAGAGATAAACGTATTTCTTGTTTAAAAGTAGGATGGAAAAAGAACAAAACCGGGGCAAAACACATTAATTAATTTGAAATGTAACCTAAAGTAAATATTGATAAAAACTAACAAACACATTACAAAGCCCATAAATTAGCTAGCTTCCACTTTTATCAATACTCAAGAATCTCTGGTCACGAGATGTTAGGTAGAGGGGGTGGCACCTCCGGCCGAAACCTTCTTGTTTGTTCCACGGCAGAACATTTGACAAGAACTAATATGGGCGATATCTGCGACCATGGCCACCGTGACCACCACCATGGCCACTGTCATGTGAATGTCTCCCCCTACTAGAACTGCCGCCGTTCTTACTGCCACTTCCGCCACCACTGCCTCCACTGCCGCCGCCACCACTTCTTGGATGTGGTGGAGGGGTTAGCATTTGTGATCCTGGTTGTTGCCTGCAAGAAGATAGGAAGCAGCTTTCAGCATGAGCCATCAGAGCAGAAGCTAAAGTATTAGATGCGGCAATTTACTCTAAGATGGATGGATTGTAGTTTTCAAATAGCTTCAACTAGAGAAATGAATTGGACAGAAGCTTCAAAACAAAAGGCAAACTGTATAAGCTAGAACTTCTTTAACAGAATTTACATCCCTAAGCTTCAGAAACTCTCGGGAGTAAAACGAATGAAAGAATTGTCCACTACAGTCAGGTATAATATAGGTGGAAAATGTAGAAAAAGAAGCACGAACTTACAAGACATAGCCAATCCGTCCAT

Coding sequence (CDS)

ATGGAGAAAAAAATAGGTGGCGGAAATGAAGAGCTTCCAAAGACTATAGTTCGTCGAGTGGTCAAAGAGAAGCTTTCTCAGTGCTCTCGTGACCAGGACATCTCCGTCAACAAAGATTCGCTTCTTGCGTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACGGCGAATGATATATGCAAGGAATCAAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTTTAGAAGATATGGAGTTTCCCGAATTGGTTAGGCCTCTCAAAGCCTCCCTCGACGAATTCAGACGCAAGAATGCTGGAAAGAAGGCAGCTGCCTCCAGAGAAAAAGAAGCGAAAAAGAAGAGGAAGGTAGAAGAGCCAACAGTTGAAGGTACAGATGGTGAAAGTATAGAAGACGTTGGAAATGATGATAACGATGATAATGATGAAGACGAAGATGAAGATGAAAATAGAGCCAGTGATGACTGA

Protein sequence

MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKRKVEEPTVEGTDGESIEDVGNDDNDDNDEDEDEDENRASDD*
Homology
BLAST of CsGy6G022510 vs. ExPASy Swiss-Prot
Match: Q9JKP7 (DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.0e-12
Identity = 46/139 (33.09%), Postives = 84/139 (60.43%), Query Frame = 0

Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKRKVEEPTVEGTD 131
            A DVL A+E+MEF   + PLK +L+ +RR   GKK A+ ++K+ K K+  EE   +  +
Sbjct: 70  NASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQKKKDKDKKDSEEQD-KSRE 129

Query: 132 GESIEDVGNDDNDDNDEDE 151
            E  ++   D++D N+E+E
Sbjct: 130 VEEEDEERLDEDDQNEEEE 142

BLAST of CsGy6G022510 vs. ExPASy Swiss-Prot
Match: Q3SZN5 (DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 48/149 (32.21%), Postives = 88/149 (59.06%), Query Frame = 0

Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKRKVEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L+ +RR+  GKK A+ ++K+ K K+         TD
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK---------TD 129

Query: 132 GESIEDVGNDDNDDNDEDEDEDENRASDD 161
            E  +   ++DND+++E  +E+E    ++
Sbjct: 130 SEEQDKSRDEDNDEDEERLEEEEQNEEEE 144

BLAST of CsGy6G022510 vs. ExPASy Swiss-Prot
Match: Q9NRF9 (DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 48/149 (32.21%), Postives = 88/149 (59.06%), Query Frame = 0

Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKRKVEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L+ +RR+  GKK A+ ++K+ K K+         TD
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK---------TD 129

Query: 132 GESIEDVGNDDNDDNDEDEDEDENRASDD 161
            E  +   ++DND+++E  +E+E    ++
Sbjct: 130 SEEQDKSRDEDNDEDEERLEEEEQNEEEE 144

BLAST of CsGy6G022510 vs. ExPASy Swiss-Prot
Match: Q5R4W3 (DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 48/149 (32.21%), Postives = 88/149 (59.06%), Query Frame = 0

Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKRKVEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L+ +RR+  GKK A+ ++K+ K K+         TD
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK---------TD 129

Query: 132 GESIEDVGNDDNDDNDEDEDEDENRASDD 161
            E  +   ++DND+++E  +E+E    ++
Sbjct: 130 SEEQDKSRDEDNDEDEERLEEEEQNEEEE 144

BLAST of CsGy6G022510 vs. ExPASy Swiss-Prot
Match: Q642A5 (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.6e-11
Identity = 47/149 (31.54%), Postives = 86/149 (57.72%), Query Frame = 0

Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKRKVEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L+ +RR+  GKK A+ ++K+ K K+  EE       
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKDCEE------- 129

Query: 132 GESIEDVGNDDNDDNDEDEDEDENRASDD 161
               +D   ++ D+++E  DE+E    ++
Sbjct: 130 ----QDKSREEEDEDEERLDEEEQNEEEE 142

BLAST of CsGy6G022510 vs. NCBI nr
Match: XP_004140162.1 (DNA polymerase epsilon subunit D [Cucumis sativus] >XP_031742448.1 DNA polymerase epsilon subunit D [Cucumis sativus] >KGN48033.1 hypothetical protein Csa_004222 [Cucumis sativus])

HSP 1 Score: 287 bits (735), Expect = 3.07e-97
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN
Sbjct: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120

Query: 121 KVEEPTVEGTDGESIEDVGNDDNDDNDEDEDEDENRASDD 160
           KVEEPTVEGTDGESI+DVGNDDNDDNDEDEDEDENRASDD
Sbjct: 121 KVEEPTVEGTDGESIDDVGNDDNDDNDEDEDEDENRASDD 160

BLAST of CsGy6G022510 vs. NCBI nr
Match: XP_008449581.1 (PREDICTED: DNA polymerase epsilon subunit D [Cucumis melo])

HSP 1 Score: 252 bits (644), Expect = 1.92e-83
Identity = 144/159 (90.57%), Postives = 147/159 (92.45%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKI  G EELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFRRKNAGKKAAA REKE KKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAALREKEVKKKR 120

Query: 121 KVEEPTVEGTDGESIEDVGNDDNDDNDEDEDEDENRASD 159
           KVEEPTVEGTDGESI+ VG+DDND     EDEDEN ASD
Sbjct: 121 KVEEPTVEGTDGESIDGVGDDDND-----EDEDENEASD 154

BLAST of CsGy6G022510 vs. NCBI nr
Match: XP_038900596.1 (DNA polymerase epsilon subunit 3 [Benincasa hispida] >XP_038900597.1 DNA polymerase epsilon subunit 3 [Benincasa hispida])

HSP 1 Score: 251 bits (641), Expect = 5.89e-83
Identity = 143/160 (89.38%), Postives = 149/160 (93.12%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKIG   EELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT+ 
Sbjct: 1   MEKKIGAAIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSY 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFRRKNAGKKAAASREKE KKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120

Query: 121 KVEEPTVEGTDGESIEDVGNDDNDDNDEDEDEDENRASDD 160
           K+EEPTVEGTDGES++ VGNDDND   ED +EDEN ASDD
Sbjct: 121 KIEEPTVEGTDGESVDGVGNDDND---EDGNEDENGASDD 157

BLAST of CsGy6G022510 vs. NCBI nr
Match: XP_022995161.1 (DNA polymerase epsilon subunit 3 [Cucurbita maxima])

HSP 1 Score: 237 bits (604), Expect = 4.22e-77
Identity = 135/159 (84.91%), Postives = 147/159 (92.45%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+G   EELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESAR+FIHYLSAT+N
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFR KNAGKKAAASR KEAKK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 KVEEPTVEGTDGESIEDVGND---DNDDNDEDEDEDENR 156
             EEPTVEGTDGES +DV ND   D+DDND+DEDEDE++
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDDDDDNDKDEDEDEDK 159

BLAST of CsGy6G022510 vs. NCBI nr
Match: XP_023533668.1 (DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo] >XP_023533669.1 DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236 bits (603), Expect = 4.74e-77
Identity = 136/157 (86.62%), Postives = 145/157 (92.36%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+G   EELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFR KNAGKKAAASR KEAKK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 KVEEPTVEGTDGESIEDVGNDDNDD---NDEDEDEDE 154
             EEPTVEGTDGES +DV ND++DD   NDEDEDEDE
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDDDNGNDEDEDEDE 157

BLAST of CsGy6G022510 vs. ExPASy TrEMBL
Match: A0A0A0KEV7 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G425700 PE=4 SV=1)

HSP 1 Score: 287 bits (735), Expect = 1.49e-97
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN
Sbjct: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120

Query: 121 KVEEPTVEGTDGESIEDVGNDDNDDNDEDEDEDENRASDD 160
           KVEEPTVEGTDGESI+DVGNDDNDDNDEDEDEDENRASDD
Sbjct: 121 KVEEPTVEGTDGESIDDVGNDDNDDNDEDEDEDENRASDD 160

BLAST of CsGy6G022510 vs. ExPASy TrEMBL
Match: A0A1S3BNA4 (DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV=1)

HSP 1 Score: 252 bits (644), Expect = 9.31e-84
Identity = 144/159 (90.57%), Postives = 147/159 (92.45%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKI  G EELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFRRKNAGKKAAA REKE KKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAALREKEVKKKR 120

Query: 121 KVEEPTVEGTDGESIEDVGNDDNDDNDEDEDEDENRASD 159
           KVEEPTVEGTDGESI+ VG+DDND     EDEDEN ASD
Sbjct: 121 KVEEPTVEGTDGESIDGVGDDDND-----EDEDENEASD 154

BLAST of CsGy6G022510 vs. ExPASy TrEMBL
Match: A0A6J1K184 (DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=4 SV=1)

HSP 1 Score: 237 bits (604), Expect = 2.04e-77
Identity = 135/159 (84.91%), Postives = 147/159 (92.45%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+G   EELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESAR+FIHYLSAT+N
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFR KNAGKKAAASR KEAKK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 KVEEPTVEGTDGESIEDVGND---DNDDNDEDEDEDENR 156
             EEPTVEGTDGES +DV ND   D+DDND+DEDEDE++
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDDDDDNDKDEDEDEDK 159

BLAST of CsGy6G022510 vs. ExPASy TrEMBL
Match: A0A6J1H495 (DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 9.33e-77
Identity = 137/157 (87.26%), Postives = 145/157 (92.36%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+G   EELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFR KNAGKKAAASR KEAKK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 KVEEPTVEGTDGESIEDV--GNDDNDD-NDEDEDEDE 154
             EEPTVEGTDGES +DV   NDDNDD ND+DEDEDE
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDEDEDE 157

BLAST of CsGy6G022510 vs. ExPASy TrEMBL
Match: A0A6J1DJA4 (DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 PE=4 SV=1)

HSP 1 Score: 234 bits (598), Expect = 1.28e-76
Identity = 135/154 (87.66%), Postives = 143/154 (92.86%), Query Frame = 0

Query: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+    EELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1   MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120
           DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL+EFRRK+AGKKAAASREKEAKKKR
Sbjct: 61  DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLNEFRRKSAGKKAAASREKEAKKKR 120

Query: 121 KVEEPTVEGTDGESIEDVGNDDNDDNDEDEDEDE 154
           K+EEPTVE    ES +DVGNDDND ND DEDEDE
Sbjct: 121 KIEEPTVED---ESKDDVGNDDND-NDHDEDEDE 150

BLAST of CsGy6G022510 vs. TAIR 10
Match: AT2G27470.1 (nuclear factor Y, subunit B11 )

HSP 1 Score: 137.9 bits (346), Expect = 7.2e-33
Identity = 87/172 (50.58%), Postives = 118/172 (68.60%), Query Frame = 0

Query: 10  EELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQ 69
           +ELP  IVRRVVK+KLS+CS D D+S++K++LLAF ESARIFIHYLSATAND CK+++RQ
Sbjct: 9   DELPLAIVRRVVKKKLSECSPDYDVSIHKEALLAFSESARIFIHYLSATANDFCKDARRQ 68

Query: 70  TIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKA-------------------AA 129
           T+KA+DV KALE+M+F E + PLK+SL++F++KNAGKKA                    A
Sbjct: 69  TMKADDVFKALEEMDFSEFLEPLKSSLEDFKKKNAGKKAGAAAASYPAGGAALKSSSGTA 128

Query: 130 SREKEAKKKRKVEEPTVEGTDGESI--EDVGNDDNDDNDEDEDEDENRASDD 161
           S+ KE KK+++ E  T +G     I  E   ND+  +ND  E+E+ N   D+
Sbjct: 129 SKPKETKKRKQEEPSTQKGARKSKIDEETKRNDEETENDNTEEENGNDEEDE 180

BLAST of CsGy6G022510 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-06
Identity = 29/98 (29.59%), Postives = 54/98 (55.10%), Query Frame = 0

Query: 5   IGGGNEE--LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDI 64
           +G   E+  LPK  + +++KE L       D+ V +D+     E    FI+ +S+ +ND+
Sbjct: 7   VGKSKEDASLPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVSSESNDV 66

Query: 65  CKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFR 101
           C +  ++TI  E VLKAL+ + F E +  + A+ ++ +
Sbjct: 67  CNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

BLAST of CsGy6G022510 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-06
Identity = 29/98 (29.59%), Postives = 54/98 (55.10%), Query Frame = 0

Query: 5   IGGGNEE--LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDI 64
           +G   E+  LPK  + +++KE L       D+ V +D+     E    FI+ +S+ +ND+
Sbjct: 7   VGKSKEDASLPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVSSESNDV 66

Query: 65  CKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFR 101
           C +  ++TI  E VLKAL+ + F E +  + A+ ++ +
Sbjct: 67  CNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

BLAST of CsGy6G022510 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 48.5 bits (114), Expect = 5.8e-06
Identity = 29/98 (29.59%), Postives = 54/98 (55.10%), Query Frame = 0

Query: 5   IGGGNEE--LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDI 64
           +G   E+  LPK  + +++KE L       D+ V +D+     E    FI+ +S+ +N++
Sbjct: 7   VGKSKEDASLPKATMTKIIKEML-----PADVRVARDAQDLLIECCVEFINLISSESNEV 66

Query: 65  CKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFR 101
           C +  ++TI  E VLKAL+ + F E V  + A+ ++ +
Sbjct: 67  CNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHK 99

BLAST of CsGy6G022510 vs. TAIR 10
Match: AT5G08190.2 (nuclear factor Y, subunit B12 )

HSP 1 Score: 48.5 bits (114), Expect = 5.8e-06
Identity = 29/98 (29.59%), Postives = 54/98 (55.10%), Query Frame = 0

Query: 5   IGGGNEE--LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDI 64
           +G   E+  LPK  + +++KE L       D+ V +D+     E    FI+ +S+ +N++
Sbjct: 7   VGKSKEDASLPKATMTKIIKEML-----PADVRVARDAQDLLIECCVEFINLISSESNEV 66

Query: 65  CKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFR 101
           C +  ++TI  E VLKAL+ + F E V  + A+ ++ +
Sbjct: 67  CNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHK 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9JKP79.0e-1233.09DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1[more]
Q3SZN52.0e-1132.21DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1[more]
Q9NRF92.0e-1132.21DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1[more]
Q5R4W32.0e-1132.21DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1[more]
Q642A57.6e-1131.54DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
XP_004140162.13.07e-9799.38DNA polymerase epsilon subunit D [Cucumis sativus] >XP_031742448.1 DNA polymeras... [more]
XP_008449581.11.92e-8390.57PREDICTED: DNA polymerase epsilon subunit D [Cucumis melo][more]
XP_038900596.15.89e-8389.38DNA polymerase epsilon subunit 3 [Benincasa hispida] >XP_038900597.1 DNA polymer... [more]
XP_022995161.14.22e-7784.91DNA polymerase epsilon subunit 3 [Cucurbita maxima][more]
XP_023533668.14.74e-7786.62DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo] >XP_023533669.1 DN... [more]
Match NameE-valueIdentityDescription
A0A0A0KEV71.49e-9799.38CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4257... [more]
A0A1S3BNA49.31e-8490.57DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV... [more]
A0A6J1K1842.04e-7784.91DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=... [more]
A0A6J1H4959.33e-7787.26DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 P... [more]
A0A6J1DJA41.28e-7687.66DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 ... [more]
Match NameE-valueIdentityDescription
AT2G27470.17.2e-3350.58nuclear factor Y, subunit B11 [more]
AT5G23090.23.4e-0629.59nuclear factor Y, subunit B13 [more]
AT5G23090.13.4e-0629.59nuclear factor Y, subunit B13 [more]
AT5G08190.15.8e-0629.59nuclear factor Y, subunit B12 [more]
AT5G08190.25.8e-0629.59nuclear factor Y, subunit B12 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 7..157
e-value: 1.7E-34
score: 120.6
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 12..119
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 11..80
e-value: 1.4E-9
score: 38.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..160
NoneNo IPR availablePANTHERPTHR46172DNA POLYMERASE EPSILON SUBUNIT 3coord: 4..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G022510.2CsGy6G022510.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0031507 heterochromatin assembly
biological_process GO:0006272 leading strand elongation
biological_process GO:0042766 nucleosome mobilization
cellular_component GO:0008623 CHRAC
cellular_component GO:0008622 epsilon DNA polymerase complex
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0046982 protein heterodimerization activity