CsGy6G022387 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G022387
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr6: 22884877 .. 22885284 (-)
RNA-Seq ExpressionCsGy6G022387
SyntenyCsGy6G022387
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCTGGAAGAGGAAGACGACGAGGACGAAGAAGAAGATGGCGATAGTGCAGATGAAGCACGCTGCTTCTTCAACCTCAATAGTTCTTTCCAGAGAACAGTGCATTTTGGTGGTCTTGGAGACGGGTCGTCGTCGAGAAACCAATTCACTTTGTTCTCTGCTTCCTTGTTTACCTCTATCTCCACCAAATCTTCTTCATCCACATCTTTAGGAGATTTCAGACTGATTTTGTTAAGCCGCTCTGCTTGTTGCATTTGCCAAAAAGGAAGAAGCTTCCCTTCAAAGAAAAGCTCATCAGCTGTAATCATGGAGTGGCTACTAACTTTATTAGAAAGAAACTCAAAATCAGCACTCCATGCCAGCTTCTCTGATCTATCCTTCTTCTGTCTCTCACAAATCTCTTGA

mRNA sequence

ATGGACCTGGAAGAGGAAGACGACGAGGACGAAGAAGAAGATGGCGATAGTGCAGATGAAGCACGCTGCTTCTTCAACCTCAATAGTTCTTTCCAGAGAACAGTGCATTTTGGTGGTCTTGGAGACGGGTCGTCGTCGAGAAACCAATTCACTTTGTTCTCTGCTTCCTTGTTTACCTCTATCTCCACCAAATCTTCTTCATCCACATCTTTAGGAGATTTCAGACTGATTTTGTTAAGCCGCTCTGCTTGTTGCATTTGCCAAAAAGGAAGAAGCTTCCCTTCAAAGAAAAGCTCATCAGCTGTAATCATGGAGTGGCTACTAACTTTATTAGAAAGAAACTCAAAATCAGCACTCCATGCCAGCTTCTCTGATCTATCCTTCTTCTGTCTCTCACAAATCTCTTGA

Coding sequence (CDS)

ATGGACCTGGAAGAGGAAGACGACGAGGACGAAGAAGAAGATGGCGATAGTGCAGATGAAGCACGCTGCTTCTTCAACCTCAATAGTTCTTTCCAGAGAACAGTGCATTTTGGTGGTCTTGGAGACGGGTCGTCGTCGAGAAACCAATTCACTTTGTTCTCTGCTTCCTTGTTTACCTCTATCTCCACCAAATCTTCTTCATCCACATCTTTAGGAGATTTCAGACTGATTTTGTTAAGCCGCTCTGCTTGTTGCATTTGCCAAAAAGGAAGAAGCTTCCCTTCAAAGAAAAGCTCATCAGCTGTAATCATGGAGTGGCTACTAACTTTATTAGAAAGAAACTCAAAATCAGCACTCCATGCCAGCTTCTCTGATCTATCCTTCTTCTGTCTCTCACAAATCTCTTGA

Protein sequence

MDLEEEDDEDEEEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSSRNQFTLFSASLFTSISTKSSSSTSLGDFRLILLSRSACCICQKGRSFPSKKSSSAVIMEWLLTLLERNSKSALHASFSDLSFFCLSQIS*
Homology
BLAST of CsGy6G022387 vs. NCBI nr
Match: KCW60815.1 (hypothetical protein EUGRSUZ_H03551 [Eucalyptus grandis])

HSP 1 Score: 114 bits (286), Expect = 6.01e-29
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 0

Query: 1   MDLEEEDDEDEEEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSSRNQFTLFSASLFTS 60
           ++ EE+D E+EE+DGDS +  RCFFNL+SSF +TVH GGLGDGSSS+NQF L   SL + 
Sbjct: 37  IEFEEDDVEEEEDDGDSEELERCFFNLSSSFHKTVHLGGLGDGSSSKNQFALL-CSLLSL 96

Query: 61  ISTKSSSSTSLGDFRLILLSRSACCICQKGRSFPSKKSSSAVIMEWLLTLLERN 114
            S++ SSS S  + RLIL S S CCICQKG SFPS+KSSSA  ME +LT    N
Sbjct: 97  ASSRPSSSPSSLEPRLILFSLSDCCICQKGSSFPSQKSSSAEGMESMLTKSAEN 149

BLAST of CsGy6G022387 vs. NCBI nr
Match: PON80127.1 (hypothetical protein PanWU01x14_005770, partial [Parasponia andersonii])

HSP 1 Score: 103 bits (258), Expect = 5.37e-25
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 0

Query: 3   LEEEDDEDEEEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSSRNQFTLFSASLFTSIS 62
           L+E+D++D+EEDGD   EARCFFNL++SF +TVH GGLG+GSSS NQ TL  +SL TS S
Sbjct: 85  LDEDDEDDDEEDGDKV-EARCFFNLSNSFHKTVHLGGLGEGSSSTNQLTLLLSSLLTSSS 144

Query: 63  TKSSSSTSLGDFRLILLSRSACCICQKGRSFPS 95
           + S S + +   RL LLS SACCICQKGRSFPS
Sbjct: 145 SSSPSESLI--LRLTLLSFSACCICQKGRSFPS 174

BLAST of CsGy6G022387 vs. NCBI nr
Match: POO02226.1 (hypothetical protein TorRG33x02_020100, partial [Trema orientale])

HSP 1 Score: 91.3 bits (225), Expect = 4.06e-20
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 3   LEEEDDEDEEEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSSRNQFTLFSASLFTSIS 62
           L+E+D++D+EEDGD   EARCFFNL++SF +TVH GGLG+GSSS NQ TL  +SL TS S
Sbjct: 85  LDEDDEDDDEEDGDKV-EARCFFNLSNSFHKTVHLGGLGEGSSSTNQLTLLLSSLLTSSS 144

Query: 63  TKSSSSTSLGDFRLILLSRSACCICQ 88
           + S S + +   RLILLS SACCICQ
Sbjct: 145 SSSPSESLI--LRLILLSFSACCICQ 167

BLAST of CsGy6G022387 vs. NCBI nr
Match: KAG5587780.1 (hypothetical protein H5410_048214 [Solanum commersonii])

HSP 1 Score: 61.2 bits (147), Expect = 3.22e-09
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 3  LEEEDDEDEE--EDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSSRNQFTLFSASLFTS 62
          LE+ED+E+EE  E+GD+ +   CF NLN+SF +TVHFGGLG+GSSS N+F    A     
Sbjct: 13 LEDEDEEEEEVEEEGDNEEVLLCF-NLNNSFHKTVHFGGLGEGSSSINKFIGLLAVSSLL 72

Query: 63 ISTKSSSSTSLGDFRLILLSRSA 83
            T + S  SL  F+LILLS SA
Sbjct: 73 FMTMTLSKISLSAFKLILLSFSA 94

BLAST of CsGy6G022387 vs. NCBI nr
Match: KAE8724959.1 (hypothetical protein F3Y22_tig00009055pilonHSYRG00003 [Hibiscus syriacus])

HSP 1 Score: 56.6 bits (135), Expect = 4.27e-07
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 12 EEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSS--RNQFTLFSASLFTSISTKSSSST 71
          EED  + +EARCFFNL++SF  TVH GG GD SSS  ++QF L S S FT+    SSS++
Sbjct: 27 EEDDGNIEEARCFFNLSNSFHNTVHLGGRGDNSSSPKKSQFALLS-SFFTAFPPSSSSTS 86

BLAST of CsGy6G022387 vs. ExPASy TrEMBL
Match: A0A059B583 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H03551 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 2.91e-29
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 0

Query: 1   MDLEEEDDEDEEEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSSRNQFTLFSASLFTS 60
           ++ EE+D E+EE+DGDS +  RCFFNL+SSF +TVH GGLGDGSSS+NQF L   SL + 
Sbjct: 37  IEFEEDDVEEEEDDGDSEELERCFFNLSSSFHKTVHLGGLGDGSSSKNQFALL-CSLLSL 96

Query: 61  ISTKSSSSTSLGDFRLILLSRSACCICQKGRSFPSKKSSSAVIMEWLLTLLERN 114
            S++ SSS S  + RLIL S S CCICQKG SFPS+KSSSA  ME +LT    N
Sbjct: 97  ASSRPSSSPSSLEPRLILFSLSDCCICQKGSSFPSQKSSSAEGMESMLTKSAEN 149

BLAST of CsGy6G022387 vs. ExPASy TrEMBL
Match: A0A2P5E3L3 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_005770 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 2.60e-25
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 0

Query: 3   LEEEDDEDEEEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSSRNQFTLFSASLFTSIS 62
           L+E+D++D+EEDGD   EARCFFNL++SF +TVH GGLG+GSSS NQ TL  +SL TS S
Sbjct: 85  LDEDDEDDDEEDGDKV-EARCFFNLSNSFHKTVHLGGLGEGSSSTNQLTLLLSSLLTSSS 144

Query: 63  TKSSSSTSLGDFRLILLSRSACCICQKGRSFPS 95
           + S S + +   RL LLS SACCICQKGRSFPS
Sbjct: 145 SSSPSESLI--LRLTLLSFSACCICQKGRSFPS 174

BLAST of CsGy6G022387 vs. ExPASy TrEMBL
Match: A0A2P5FWP6 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_020100 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.97e-20
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 3   LEEEDDEDEEEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSSRNQFTLFSASLFTSIS 62
           L+E+D++D+EEDGD   EARCFFNL++SF +TVH GGLG+GSSS NQ TL  +SL TS S
Sbjct: 85  LDEDDEDDDEEDGDKV-EARCFFNLSNSFHKTVHLGGLGEGSSSTNQLTLLLSSLLTSSS 144

Query: 63  TKSSSSTSLGDFRLILLSRSACCICQ 88
           + S S + +   RLILLS SACCICQ
Sbjct: 145 SSSPSESLI--LRLILLSFSACCICQ 167

BLAST of CsGy6G022387 vs. ExPASy TrEMBL
Match: A0A803R8N0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.20e-17
Identity = 62/124 (50.00%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 3   LEEEDDEDEEEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSS-RNQF----------- 62
           L+E++D+++E++GD   EA CFFNLN+SF +TVHFGGLG+GSSS ++QF           
Sbjct: 50  LDEDEDDEDEDEGDRV-EALCFFNLNNSFHKTVHFGGLGEGSSSTKDQFILLLLLVLVLL 109

Query: 63  --TLFSASLFTSISTKSSSSTSLGDF-------RLILLSR-SACCICQKGRSFPSKKSSS 104
              L S+SL   +    S S+            RL LLS  S CCICQKGRS PSKKSSS
Sbjct: 110 VSVLLSSSLTFLLPLPPSFSSCCSCCPSESLVPRLSLLSLFSTCCICQKGRSLPSKKSSS 169

BLAST of CsGy6G022387 vs. ExPASy TrEMBL
Match: A0A6A3CCS6 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009055pilonHSYRG00003 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.07e-07
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 12 EEDGDSADEARCFFNLNSSFQRTVHFGGLGDGSSS--RNQFTLFSASLFTSISTKSSSST 71
          EED  + +EARCFFNL++SF  TVH GG GD SSS  ++QF L S S FT+    SSS++
Sbjct: 27 EEDDGNIEEARCFFNLSNSFHNTVHLGGRGDNSSSPKKSQFALLS-SFFTAFPPSSSSTS 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KCW60815.16.01e-2960.53hypothetical protein EUGRSUZ_H03551 [Eucalyptus grandis][more]
PON80127.15.37e-2564.52hypothetical protein PanWU01x14_005770, partial [Parasponia andersonii][more]
POO02226.14.06e-2062.79hypothetical protein TorRG33x02_020100, partial [Trema orientale][more]
KAG5587780.13.22e-0953.01hypothetical protein H5410_048214 [Solanum commersonii][more]
KAE8724959.14.27e-0756.45hypothetical protein F3Y22_tig00009055pilonHSYRG00003 [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
A0A059B5832.91e-2960.53Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H03551 PE=4 SV... [more]
A0A2P5E3L32.60e-2564.52Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5FWP61.97e-2062.79Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_020... [more]
A0A803R8N03.20e-1750.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6A3CCS62.07e-0756.45Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009055pilon... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G022387.1CsGy6G022387.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane