CsGy6G021823 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G021823
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Retrotransposon protein
Location	Gy14Chr6: 22427542 .. 22428412 (+)
RNA-Seq Expression	CsGy6G021823
Synteny	CsGy6G021823

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGTCTCCCTTCCTCTGTCCTTCAAAATACCTCTCCGTTCGAAAAACTATATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTGCTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACATGCCCGTCTCTGTTGCTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTCTTTCCAACCGACTCCGGATATCTCGGCATGTCACTTTTTGGGAACACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAATCTTTCTTTACAAACACATCTGTTGACCTTTTTCCTCTCTCTGAACCCACCTTGGATACTGAGCTTGCACAATCTTCACCTGCTACTGCAAATCTGGATCCACCGTCTGTCTCCGATGATGTTCCTGAATCGCCACCTGCTACTCCTCTTCGTCGCTCTACCAGGGTAAGAGAACCTCCCCCTCATCTCACTGATTACCATTGTTTTTCTACCATTGTTTCCCTTGTTGAACCCACCTCTTATCAAGAGGCCAGTATTAACCCAGTATGGCAGAAAGCAATGGATGAAGAATTACAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGATTTACCTCCCGGTAAAAGACCCATTGGTTGCAAATGGATTTACAAAATCAAAACTCACTCTGATGGAACTATTGAACGTTATAAAGCTCGGCTTGTTGCAAAAGGATACTCACAAGAATATGGGATAGACTATGAAGAAACATTTGCCCCTGTTGCCCGGATGACATCTGTTCGCAGCTTGTTAGCTGTTGCTGCTGCCAAACAGTGGCCTCTTTTTCAGATGGATGTCAA

mRNA sequence

ATCGTCTCCCTTCCTCTGTCCTTCAAAATACCTCTCCGTTCGAAAAACTATATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTGCTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACATGCCCGTCTCTGTTGCTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTCTTTCCAACCGACTCCGGATATCTCGGCATGTCACTTTTTGGGAACACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAATCTTTCTTTACAAACACATCTGTTGACCTTTTTCCTCTCTCTGAACCCACCTTGGATACTGAGCTTGCACAATCTTCACCTGCTACTGCAAATCTGGATCCACCGTCTGTCTCCGATGATGTTCCTGAATCGCCACCTGCTACTCCTCTTCGTCGCTCTACCAGGGTAAGAGAACCTCCCCCTCATCTCACTGATTACCATTGTTTTTCTACCATTGTTTCCCTTGTTGAACCCACCTCTTATCAAGAGGCCAGTATTAACCCAGTATGGCAGAAAGCAATGGATGAAGAATTACAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGATTTACCTCCCGGTAAAAGACCCATTGGTTGCAAATGGATTTACAAAATCAAAACTCACTCTGATGGAACTATTGAACGTTATAAAGCTCGGCTTGTTGCAAAAGGATACTCACAAGAATATGGGATAGACTATGAAGAAACATTTGCCCCTGTTGCCCGGATGACATCTGTTCGCAGCTTGTTAGCTGTTGCTGCTGCCAAACAGTGGCCTCTTTTTCAGATGGATGTCAA

Coding sequence (CDS)

ATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTGCTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACATGCCCGTCTCTGTTGCTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTCTTTCCAACCGACTCCGGATATCTCGGCATGTCACTTTTTGGGAACACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAATCTTTCTTTACAAACACATCTGTTGACCTTTTTCCTCTCTCTGAACCCACCTTGGATACTGAGCTTGCACAATCTTCACCTGCTACTGCAAATCTGGATCCACCGTCTGTCTCCGATGATGTTCCTGAATCGCCACCTGCTACTCCTCTTCGTCGCTCTACCAGGGTAA

Protein sequence

MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG*

Homology

[Close]

BLAST of CsGy6G021823 vs. NCBI nr
Match: KAA0062627.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 1.31e-36
Identity = 83/129 (64.34%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 1   MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGY 60
           MV LPTIL  K LVV   F YILMNT+NLNH+P SV  LAM  N K FVVG LFP D  Y
Sbjct: 1   MVLLPTILTLKSLVVLVLFSYILMNTLNLNHVPSSVVFLAMTQNIKAFVVGILFPIDFVY 60

Query: 61  LGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIH 120
           L MS FG+  CSL C PSTPPSLVLN S  TH+LTFFLSL+   I+SL NLHLLLQ    
Sbjct: 61  LAMSHFGSIPCSLACSPSTPPSLVLNFSSLTHMLTFFLSLSSLLIMSLLNLHLLLQPRTS 120

Query: 121 RLSPMMFLN 129
           R S M+ LN
Sbjct: 121 RPSLMIVLN 129

[Close]

BLAST of CsGy6G021823 vs. NCBI nr
Match: KAA0050767.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 3.10e-34
Identity = 84/140 (60.00%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 2   VFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYL 61
           V LPTIL  K  VVPA F  ILMNT+NLNH+P SV  LAMA N K FVVG  FP D  YL
Sbjct: 326 VLLPTILILKPSVVPALFFCILMNTLNLNHVPASVVFLAMAQNIKVFVVGIPFPIDFVYL 385

Query: 62  GMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHR 121
            MS F + LC LVCP STPPSLVLNLS  TH+L  FL L+P  ++SL NLHLL Q W +R
Sbjct: 386 AMSHFESILCYLVCPSSTPPSLVLNLSSLTHILICFLPLSPHLVMSLLNLHLLRQSWTNR 445

Query: 122 LSPMMFLNRHLLLLFVALPG 141
            S M  LN     L V L G
Sbjct: 446 PSLMAVLNLLQTPLLVVLLG 465

[Close]

BLAST of CsGy6G021823 vs. NCBI nr
Match: TYJ98055.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 8.60e-29
Identity = 68/106 (64.15%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 24  MNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSL 83
           MNT+NLNH+P SV  LAMA N K FVVG LFP D  YL MS F + LCSL C PSTPPSL
Sbjct: 1   MNTLNLNHVPSSVVFLAMAQNIKAFVVGILFPIDFVYLAMSHFESILCSLACSPSTPPSL 60

Query: 84  VLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLN 129
           VLN S  TH+LTFFLSL+   I+SL NLHLLLQ      S M+ LN
Sbjct: 61  VLNFSSLTHMLTFFLSLSLLLIMSLLNLHLLLQPRTSHPSLMIVLN 106

[Close]

BLAST of CsGy6G021823 vs. NCBI nr
Match: XP_031745067.1 (uncharacterized protein LOC116405245 [Cucumis sativus])

HSP 1 Score: 118 bits (295), Expect = 1.25e-27
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 82  SLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG 141
           SLVLNLSLQ HLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG
Sbjct: 631 SLVLNLSLQIHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG 690

[Close]

BLAST of CsGy6G021823 vs. NCBI nr
Match: KAA0047340.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 2.31e-27
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 4   LPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGM 63
           +PT+ +S  LV+   F  ILMNT+NLN +      LAMA N K F+VG  FP D  YL M
Sbjct: 95  IPTLKSSVMLVL---FPCILMNTLNLNPVSAFAVFLAMAQNIKVFIVGIPFPIDFVYLAM 154

Query: 64  SLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNL 111
           S F +TLCSLVCPPSTPPSLVLNLS  THLLTFFLSL+P  I+SL NL
Sbjct: 155 SHFRSTLCSLVCPPSTPPSLVLNLSSLTHLLTFFLSLSPLLIMSLLNL 199

[Close]

BLAST of CsGy6G021823 vs. ExPASy TrEMBL
Match: A0A5A7V6M4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001370 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 6.36e-37
Identity = 83/129 (64.34%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 1   MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGY 60
           MV LPTIL  K LVV   F YILMNT+NLNH+P SV  LAM  N K FVVG LFP D  Y
Sbjct: 1   MVLLPTILTLKSLVVLVLFSYILMNTLNLNHVPSSVVFLAMTQNIKAFVVGILFPIDFVY 60

Query: 61  LGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIH 120
           L MS FG+  CSL C PSTPPSLVLN S  TH+LTFFLSL+   I+SL NLHLLLQ    
Sbjct: 61  LAMSHFGSIPCSLACSPSTPPSLVLNFSSLTHMLTFFLSLSSLLIMSLLNLHLLLQPRTS 120

Query: 121 RLSPMMFLN 129
           R S M+ LN
Sbjct: 121 RPSLMIVLN 129

[Close]

BLAST of CsGy6G021823 vs. ExPASy TrEMBL
Match: A0A5A7U8Q0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00160 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 1.50e-34
Identity = 84/140 (60.00%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 2   VFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYL 61
           V LPTIL  K  VVPA F  ILMNT+NLNH+P SV  LAMA N K FVVG  FP D  YL
Sbjct: 326 VLLPTILILKPSVVPALFFCILMNTLNLNHVPASVVFLAMAQNIKVFVVGIPFPIDFVYL 385

Query: 62  GMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHR 121
            MS F + LC LVCP STPPSLVLNLS  TH+L  FL L+P  ++SL NLHLL Q W +R
Sbjct: 386 AMSHFESILCYLVCPSSTPPSLVLNLSSLTHILICFLPLSPHLVMSLLNLHLLRQSWTNR 445

Query: 122 LSPMMFLNRHLLLLFVALPG 141
            S M  LN     L V L G
Sbjct: 446 PSLMAVLNLLQTPLLVVLLG 465

[Close]

BLAST of CsGy6G021823 vs. ExPASy TrEMBL
Match: A0A5D3BHT2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00060 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 4.16e-29
Identity = 68/106 (64.15%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 24  MNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSL 83
           MNT+NLNH+P SV  LAMA N K FVVG LFP D  YL MS F + LCSL C PSTPPSL
Sbjct: 1   MNTLNLNHVPSSVVFLAMAQNIKAFVVGILFPIDFVYLAMSHFESILCSLACSPSTPPSL 60

Query: 84  VLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLN 129
           VLN S  TH+LTFFLSL+   I+SL NLHLLLQ      S M+ LN
Sbjct: 61  VLNFSSLTHMLTFFLSLSLLLIMSLLNLHLLLQPRTSHPSLMIVLN 106

[Close]

BLAST of CsGy6G021823 vs. ExPASy TrEMBL
Match: A0A5A7TW10 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001610 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 1.12e-27
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 4   LPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGM 63
           +PT+ +S  LV+   F  ILMNT+NLN +      LAMA N K F+VG  FP D  YL M
Sbjct: 95  IPTLKSSVMLVL---FPCILMNTLNLNPVSAFAVFLAMAQNIKVFIVGIPFPIDFVYLAM 154

Query: 64  SLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNL 111
           S F +TLCSLVCPPSTPPSLVLNLS  THLLTFFLSL+P  I+SL NL
Sbjct: 155 SHFRSTLCSLVCPPSTPPSLVLNLSSLTHLLTFFLSLSPLLIMSLLNL 199

[Close]

BLAST of CsGy6G021823 vs. ExPASy TrEMBL
Match: A0A5A7TUN2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00740 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 2.73e-26
Identity = 69/108 (63.89%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGY 60
           MV L TI   K LVV   F  ILMNT+NLN +P S   LAMA N K FVVG  F  D  Y
Sbjct: 381 MVLLLTIPTLKSLVVLVLFSCILMNTLNLNPVPASAVFLAMAQNIKVFVVGIPFLIDFVY 440

Query: 61  LGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL 108
           L MS FG+TLCSLV PPSTPPSLVL+LS  THLL FFLSL+P  I+SL
Sbjct: 441 LAMSFFGSTLCSLVYPPSTPPSLVLHLSSLTHLLIFFLSLSPLLIVSL 488

The following BLAST results are available for this feature:

BLAST of CsGy6G021823 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G021823 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062627.1	1.31e-36	64.34	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0050767.1	3.10e-34	60.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ98055.1	8.60e-29	64.15	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
XP_031745067.1	1.25e-27	98.33	uncharacterized protein LOC116405245 [Cucumis sativus]	[more]
KAA0047340.1	2.31e-27	62.04	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of CsGy6G021823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M4	6.36e-37	64.34	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7U8Q0	1.50e-34	60.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BHT2	4.16e-29	64.15	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TW10	1.12e-27	62.04	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7TUN2	2.73e-26	63.89	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of CsGy6G021823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G021823.1	CsGy6G021823.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding