CsGy6G021582 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G021582
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	glycine-rich cell wall structural protein 1-like
Location	Gy14Chr6: 22251972 .. 22252513 (-)
RNA-Seq Expression	CsGy6G021582
Synteny	CsGy6G021582

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTGGGACAAGGATGGACGAAATATTGGGACAAGGAGGTGAAGTTCTTGGTGAAATAATGAAACGAGGTGGTAAAGATTTTGGTGAGATATTTGGACGGGGTGGTAAAGCTAGGGACGACAAATATAGGGACGAGAGCGTGAAGTTCTAAATGAAACAATGAGACGAGGTGATGGGGCTCATGGTAAGATATTTGGACGGGGTGGTAAAGTTACAGGCAAAATATTGGAACGAGGGGGTGAAGCTCTTGGTGAAACAATTGGGCGAGGTGGTGAAGCTCTTGGTGAGATATTTGGACGGGGTGGTAAAGCTACAGGCGAAATATTAGGACGAGGGGGTGAAGCTCTTGGTGAAACAATGGGACGAGGTGGTAAAGCTATTGGTGAGATATTGGGACGGGGTGGTAGAGCTATGGGCGAAATACTGGGACGAGGGGTGAAACTCTTGGTGAAACAATGGGACGAGGTGGTAAAGCTATTGGTGAGATATTTGGACGGGGTGGTAGAGCTATGGGCGAAATACTGGGACGAGGGGTGA

mRNA sequence

ATGCAATTTGGGACAAGGATGGACGAAATATTGGGACAAGGAGGTGAAGTTCTTGGTGAAATAATGAAACGAGGTGGTAAAGATTTTGGTGAGATATTTGGACGGGGTGGCAAAATATTGGAACGAGGGGGTGAAGCTCTTGGTGAAACAATTGGGCGAGGTGGTGAAGCTCTTGGTGAGATATTTGGACGGGGTGGTAAAGCTACAGGCGAAATATTAGGACGAGGGGGTGAAGCTCTTGGTGAAACAATGGGACGAGGTGGTAAAGCTATTGGTGAGATATTGGGACGGGGTGGTAGAGCTATGGGCGAAATACTGGGACGAGGGGTGAAACTCTTGGTGAAACAATGGGACGAGGTGGTAAAGCTATTGGTGAGATATTTGGACGGGGTGGTAGAGCTATGGGCGAAATACTGGGACGAGGGGTGA

Coding sequence (CDS)

ATGCAATTTGGGACAAGGATGGACGAAATATTGGGACAAGGAGGTGAAGTTCTTGGTGAAATAATGAAACGAGGTGGTAAAGATTTTGGTGAGATATTTGGACGGGGTGGCAAAATATTGGAACGAGGGGGTGAAGCTCTTGGTGAAACAATTGGGCGAGGTGGTGAAGCTCTTGGTGAGATATTTGGACGGGGTGGTAAAGCTACAGGCGAAATATTAGGACGAGGGGGTGAAGCTCTTGGTGAAACAATGGGACGAGGTGGTAAAGCTATTGGTGAGATATTGGGACGGGGTGGTAGAGCTATGGGCGAAATACTGGGACGAGGGGTGAAACTCTTGGTGAAACAATGGGACGAGGTGGTAAAGCTATTGGTGAGATATTTGGACGGGGTGGTAGAGCTATGGGCGAAATACTGGGACGAGGGGTGA

Protein sequence

MQFGTRMDEILGQGGEVLGEIMKRGGKDFGEIFGRGGKILERGGEALGETIGRGGEALGEIFGRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRGVKLLVKQWDEVVKLLVRYLDGVVELWAKYWDEG*

Homology

[Close]

BLAST of CsGy6G021582 vs. NCBI nr
Match: XP_031742894.1 (glycine-rich cell wall structural protein 1.8-like [Cucumis sativus])

HSP 1 Score: 160 bits (406), Expect = 9.63e-46
Identity = 88/114 (77.19%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 4   GTRMDEILGQGGEVLGEIMKRGGKDFGEIFGRGGK----ILERGGEALGETIGRGGEALG 63
           G  M EILG+GGE LGE M RGGK  GEIFGRGG+    IL RGGE LGET+GRGG+A+G
Sbjct: 31  GRAMGEILGRGGETLGETMGRGGKAIGEIFGRGGRAMGEILGRGGETLGETMGRGGKAIG 90

Query: 64  EIFGRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRGVKLL 113
           EIFGRGG+A GEILGRGGE LGETMGRGGKAIGEI GRGGRAMGEILGRG + L
Sbjct: 91  EIFGRGGRAMGEILGRGGETLGETMGRGGKAIGEIFGRGGRAMGEILGRGGETL 144

[Close]

BLAST of CsGy6G021582 vs. NCBI nr
Match: XP_011658456.2 (chromatin target of PRMT1 protein [Cucumis sativus])

HSP 1 Score: 150 bits (379), Expect = 1.15e-43
Identity = 84/114 (73.68%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 4   GTRMDEILGQGGEVLGEIMKRGGKDFGEIFGRGGK----ILERGGEALGETIGRGGEALG 63
           G    +IL +GGE LGE + RGG+  GEIFGRGGK    IL RGGEALGET+GRGG+A+G
Sbjct: 16  GKVTGKILERGGEALGETIGRGGEALGEIFGRGGKATGEILGRGGEALGETMGRGGKAIG 75

Query: 64  EIFGRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRGVKLL 113
           EI GRGG+A GEILGRGGE LGETMGRGGKAIGEI GRGGRAMGEILGRG + L
Sbjct: 76  EILGRGGRAMGEILGRGGETLGETMGRGGKAIGEIFGRGGRAMGEILGRGGETL 129

[Close]

BLAST of CsGy6G021582 vs. NCBI nr
Match: TYK13397.1 (glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 1.26e-40
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 4   GTRMDEILGQGGEVLGEIMKRGGKDFGEIFGRGG----KILERGGEALGETIGRGGEALG 63
           G  M EILG+GGE LGE++ RGG+  GEI GRGG    +IL RGGEA+GE +GRGGEA+G
Sbjct: 87  GEAMGEILGRGGEALGEMIGRGGEAIGEIIGRGGAAMGEILGRGGEAMGEILGRGGEAMG 146

Query: 64  EIFGRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRGVKLL 113
           EI GRGG+A GEILGRGGEALGE +GRGG+AIGEI+GRGG AMGEILGRG K +
Sbjct: 147 EILGRGGEAMGEILGRGGEALGEIIGRGGEAIGEIIGRGGEAMGEILGRGGKAM 200

[Close]

BLAST of CsGy6G021582 vs. NCBI nr
Match: XP_016900727.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 144 bits (364), Expect = 8.13e-40
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 7   MDEILGQGGEVLGEIMKRGGKDFGEIFGRGGK----ILERGGEALGETIGRGGEALGEIF 66
           M EILG+GGE  GEI+ RGG+  GEI GRGGK    IL RGGEA+GE +GRGG+ +GEIF
Sbjct: 1   MGEILGRGGEATGEIIGRGGEAMGEILGRGGKAMGEILGRGGEAIGEIVGRGGKDIGEIF 60

Query: 67  GRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRGV 110
           GRGG+A GEI GRGGEA+GE +GRGGKAIGEILGRGG A+GEI GRGV
Sbjct: 61  GRGGEAMGEIFGRGGEAMGEILGRGGKAIGEILGRGGEAIGEIFGRGV 108

[Close]

BLAST of CsGy6G021582 vs. NCBI nr
Match: KAE8647333.1 (hypothetical protein Csa_003353 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 1.18e-38
Identity = 79/93 (84.95%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 22  MKRGGKDFGEIFGRGGK----ILERGGEALGETIGRGGEALGEIFGRGGKATGEILGRGG 81
           M+RG    G+IFGRGGK    ILERGGEALGETIGRGGEALGEIFGRGGKATGEILGRGG
Sbjct: 1   MRRGDGAHGKIFGRGGKVTGKILERGGEALGETIGRGGEALGEIFGRGGKATGEILGRGG 60

Query: 82  EALGETMGRGGKAIGEILGRGGRAMGEILGRGV 110
           EALGETMGRGGKAIGEI GRGG A+GEI+GRGV
Sbjct: 61  EALGETMGRGGKAIGEIFGRGGNAIGEIVGRGV 93

[Close]

BLAST of CsGy6G021582 vs. ExPASy TrEMBL
Match: A0A0A0KHS4 (Pollen coat oleosin-glycine rich protein OS=Cucumis sativus OX=3659 GN=Csa_6G416850 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 3.82e-43
Identity = 88/114 (77.19%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 4   GTRMDEILGQGGEVLGEIMKRGGKDFGEIFGRGGK----ILERGGEALGETIGRGGEALG 63
           G  M EILG+GGE LGE M RGGK  GEIFGRGG+    IL RGGE LGET+GRGG+A+G
Sbjct: 203 GRAMGEILGRGGETLGETMGRGGKAIGEIFGRGGRAMGEILGRGGETLGETMGRGGKAIG 262

Query: 64  EIFGRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRGVKLL 113
           EIFGRGG+A GEILGRGGE LGETMGRGGKAIGEI GRGGRAMGEILGRG + L
Sbjct: 263 EIFGRGGRAMGEILGRGGETLGETMGRGGKAIGEIFGRGGRAMGEILGRGGETL 316

[Close]

BLAST of CsGy6G021582 vs. ExPASy TrEMBL
Match: A0A5D3CNE0 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00050 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 6.10e-41
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 4   GTRMDEILGQGGEVLGEIMKRGGKDFGEIFGRGG----KILERGGEALGETIGRGGEALG 63
           G  M EILG+GGE LGE++ RGG+  GEI GRGG    +IL RGGEA+GE +GRGGEA+G
Sbjct: 87  GEAMGEILGRGGEALGEMIGRGGEAIGEIIGRGGAAMGEILGRGGEAMGEILGRGGEAMG 146

Query: 64  EIFGRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRGVKLL 113
           EI GRGG+A GEILGRGGEALGE +GRGG+AIGEI+GRGG AMGEILGRG K +
Sbjct: 147 EILGRGGEAMGEILGRGGEALGEIIGRGGEAIGEIIGRGGEAMGEILGRGGKAM 200

[Close]

BLAST of CsGy6G021582 vs. ExPASy TrEMBL
Match: A0A1S4DXM4 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC107991003 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 3.94e-40
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 7   MDEILGQGGEVLGEIMKRGGKDFGEIFGRGGK----ILERGGEALGETIGRGGEALGEIF 66
           M EILG+GGE  GEI+ RGG+  GEI GRGGK    IL RGGEA+GE +GRGG+ +GEIF
Sbjct: 1   MGEILGRGGEATGEIIGRGGEAMGEILGRGGKAMGEILGRGGEAIGEIVGRGGKDIGEIF 60

Query: 67  GRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRGV 110
           GRGG+A GEI GRGGEA+GE +GRGGKAIGEILGRGG A+GEI GRGV
Sbjct: 61  GRGGEAMGEIFGRGGEAMGEILGRGGKAIGEILGRGGEAIGEIFGRGV 108

[Close]

BLAST of CsGy6G021582 vs. ExPASy TrEMBL
Match: A0A5D3BMR9 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68878G00010 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.32e-33
Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 7   MDEILGQGGEVLGEIMKRGGKDFGEIFGRGGKILERGGEALGETIGRGGEALGEIFGRGG 66
           M EILG+GG+ +GEI+ RGG+  GEI GRGGK +       GE  GRGGEA+GEIFGRGG
Sbjct: 1   MGEILGRGGKAMGEILGRGGEAIGEIVGRGGKDI-------GEIFGRGGEAMGEIFGRGG 60

Query: 67  KATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEI 105
           +A GEILGRGG+A+GE +GRGG+AIGEI GRGG+A GEI
Sbjct: 61  EAMGEILGRGGKAIGEILGRGGEAIGEIFGRGGKATGEI 92

[Close]

BLAST of CsGy6G021582 vs. ExPASy TrEMBL
Match: A0A5A7UQF2 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001940 PE=4 SV=1)

HSP 1 Score: 115 bits (289), Expect = 1.16e-29
Identity = 73/113 (64.60%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 4   GTRMDEILGQG---GEVLGEIMKRGGKDFGEIFGRG----GKILERGGEALGETIGRGGE 63
           G R  + +G+G   G+ +GE   RG K  GE  GRG    G+IL R GEA+GE  GRGGE
Sbjct: 22  GRRGGKTIGEGRRGGKTIGE--GRGRKTIGE--GRGAEAIGEILGRDGEAIGEIFGRGGE 81

Query: 64  ALGEIFGRGGKATGEILGRGGEALGETMGRGGKAIGEILGRGGRAMGEILGRG 109
           ALGEI GR G+A GEILGRGGEALGE +GRGG+AIGEI+GRGG AMGEILGRG
Sbjct: 82  ALGEILGRDGEAMGEILGRGGEALGEMIGRGGEAIGEIIGRGGAAMGEILGRG 130

The following BLAST results are available for this feature:

BLAST of CsGy6G021582 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G021582 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742894.1	9.63e-46	77.19	glycine-rich cell wall structural protein 1.8-like [Cucumis sativus]	[more]
XP_011658456.2	1.15e-43	73.68	chromatin target of PRMT1 protein [Cucumis sativus]	[more]
TYK13397.1	1.26e-40	71.05	glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa]	[more]
XP_016900727.1	8.13e-40	72.22	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]
KAE8647333.1	1.18e-38	84.95	hypothetical protein Csa_003353 [Cucumis sativus]	[more]

BLAST of CsGy6G021582 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHS4	3.82e-43	77.19	Pollen coat oleosin-glycine rich protein OS=Cucumis sativus OX=3659 GN=Csa_6G416...	[more]
A0A5D3CNE0	6.10e-41	71.05	Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S4DXM4	3.94e-40	72.22	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3BMR9	1.32e-33	66.67	Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7UQF2	1.16e-29	64.60	Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of CsGy6G021582 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G021582.1	CsGy6G021582.1	mRNA