CsGy6G020880 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G020880
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	S4 RNA-binding domain-containing protein
Location	Gy14Chr6: 21532656 .. 21538940 (+)
RNA-Seq Expression	CsGy6G020880
Synteny	CsGy6G020880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCATTAGCATCTTCTTCACTCTTACTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCATCCAATTCCAAACCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATTCCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCGTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTGAGTAAAGTTCTTGCTGCCGCTGGAGGTTGGTGCTTCTCTAACCAAAATGCTAATTCTGTTACTCTGCATTCCTTTCTGTGTTATGTGCTCTTTACTTGTTGGTGTTTAGTTCTTGGCGTGGTGGCTAGAAGTCCTGTTATTTTCGGAAACTATTTAGTTATGTCTACAACAGGTTTTGGCAATAGGATGGAAGCAATAAGTATCAATTTCTAGTTTAGTTAGTAGAATTTGTAAGTATAGTTGCAAAACGGTACTAATTTTGATTTACTTCGCATGAACCTCAAGTTATTTATTTCACGTGGATAGAAATAGAGAGATTGAACAAACTGAGCGGTTTCTACACTAGTGTTATGCGATATACTAGCCTAAATATGGTCTCACCAACAACACTATACTCCAAGAAAAAAGAATCAAAACAGCACAACGGACCCAGATTAACGAAGGCTCTAATCAATTGAGTAGAGGAAAATTTAATAGGAGCTTAAGCTCCTGTTGGAATGAAACTTATGTGATTCTTTCCTTAGGGCCGGATCCTTTTAATTCGTTCCGTTTCATTCTTTCATGAGTGGATATATTTTTTCAAGTCTTAACCAACTTGAAGGAGGGTCATATTGTTTTTTGAAACATTTTCTTTCATTGAGGAAGAATAAATGAATATAAGACATTAAAAAGAAGTGTGAGAGTAGTGAATTAGGTAAAGTAATTAGGAAGAATAAATGAATATAAGACATTAAAAAGAGTAGTGAATTAGGAAGAAAAACTCTACTAAAGAAAAATTTTCCAATTAGGTAAAGTAGTGTGAGAGTAACTTGAAGAAGGGACATGATTATCCGGATGACCACTAGTTAATCTATAATATATATCTTATTCAAATTGTATCTTAATCTTTTTCACAAGTACATTTTTCAATGAAAATTTTTCACTTTTTATTTATAAAGTTGTTGACATTTGGTTTATTCTCCACAAAGTTGAATTCATTGGATATTGTGAATGAGGTATTGCTTTTGCAAGAAACTTAGGTACTAGAGTGAGTAAATTTATCATCATATGAATTTGTTGGGCTTAGACTCTCTTATGTGTACAAGGTTCGGTATTTTCTGATTTTTGGTGATATTATTCATATGACAGCTCTTCCATCTTGAACCTTCTATTATTCTTGTTCTTGCAACATCTACTTATTTGTGGCCTTATTTTTTTCTCACCGTCTACGAATACTTTTTGATTTTGCATGTTTGGTAGTCTGTGATCTGTTATTTGCTTTTGGTTAGGTTTAAGGGAAATTCTTCTCTTTGAGTTCCATTTTCATTGTAAAACCACGAATGGCCAACTATGTAAATTGACACGTACTGTCAAAATGCGTTTGGCAAGTCATGGTAATAAGATCAATTGTTTATAAAATTAAATGTTGGAACATGTTGGATAATGTGTTTGGTAAAGCCATGGTGTACTCTCTCAAAGCTCCTTCTTCTCCGTTACTATTACTTTGTATTAGATCTTTTAATAGTCACGACCTAGTGAAGATTTCCGTTTTGAAAGTTAGTTCCGGATATATGAGGGTGCTAAGGGGTGTCAACCTAGTTGAGATGTTTGGGTGTGCTTGTTGATCCTCTATAAAAAGCTATTGTATAATCCTCTTGTAATATAAGTTTTAGTCTCATTTTCTCTTTTTAATAAAGAGACTTGTTTCTGTTAAAAAAAAAAAACATTTGGCCCGAGAGAAAGGAAGAGGTAGAGATATCTTGTGGAGGTCTGGACTACAACCTGGTTAATATTTGCTCCCCTTTTGGTATTAATTTTCAAAGTTCTATCTATCCTCTATCCATTCTCCCCAACAACTGGATCCTTTTTTACAGTGGTAGGCACTTAAGTTGGAATATTTCTGTAGAATACCTTGTTGTTTCTAGCTAGCCTCAACCCCTGTTAGGACGAGGGCCGCGGATGAAAATTCAGTTGTATACAATTTGGTCAAGCTTGTAAGGATAAATTATTATTATTATTATTATTATTTTTTTTGTGTTCTATTGTTTAGCATTGGACACGGTGTGTTCTGTTTCATCTTCCTCTGCAGTGTCATTATATATATATTAAAACAAAAATGAAAGAATACAGCGGCGTTAAAAAAAGCCCACAAAATGAAGTGGTTCTAGCTAAGTAAAATGTTTTCTAGAGAATAGTTAAAAAAAAAGCTTCAAGACAGAATACCCAAAGGGACCCTAAAAATCTCACCAAAGATCAAATCTCACAAGGGTACTTGTCCCTACTGCTAAACACTCTATCATTCCTCTCCCCCAATATCCCAAACAATTGCACACACCCCAACAAGCCAAAAAATACTCTCTCTAAAAGGCGGATGGAGGAGGAACTCCTCTATTGCTGCACAAACATCTCTCTGCCCAGCAATGTCCTGTTTACATTAATTACCATTATGCGCTCAAGATCTCATAGTTGGTATTATACTCCTCTTTTGTTTTTCAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGGTTGTTTTTTATGTAATTTGGGTTGTATGGATTTTGTCTTAACTATGAAGGTATAAATGATTTCACCTTTCTGCAGACTCGGGTTGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTACCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTAGGTCACATATTCTCTAAGACCAATTTCCCTTTCCTATCCCTACCCCAAGCTTCTCTTGGGAACTTGGCTTTTATGTTCTTCCGTTTCTAATCTATAGAATGCGATGGCAGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGTATGTCAAACTCAAACCTACTGATCATACCGTTTTCAAGCAAAAGAGTGATAACCTTATGATCATTTTGATGCAATAAATATAGTTTGCAAGTTAATGAACTACAACTTTGTCTTTGCAGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGTATGATATACATACTCTCATGGTTGCCTCCTTATTTAGGATTGCTGTACAAAAGGTTTGGAGTTTAAAGGATAGATCTTGAACCCTTTGCAAAATTACCATTGATTTTCTTTTTCAGGAGATTTTGCTCAAGGTATCTCACATCCTTCATCTGGTTTATCGAAGGAGTAAGTGATTTAAATTTATTTCCATACACTTTCTAATGCTTTGTAAAGTTACCTACACAAGTAACTTCTGGCATTATTTCCAGGGAGTAATCTAGAGATAGACTGGCTTGAAAAAATCTTTGAAACTATAAACATCATATGAGGAATGATTGTGGGCTATGGCCTATAAGTCTGTCGTATTTATTGAATGAAAATTACTGGAACCTTTATTTACTGACCATTTCAGGGATGAGAAATATTGGACTGATCATCTTTTTTAGTTCTTTTTTCCCCATAAAATTTTGAATTAGAGCATTTTCTTTTTTATATTGTGCTTCCCAGTACATATAGCTTTTAAAATTTTGAATGTTGGATTTCTGAAAAATGAAAATGCAACATTTGCTCTTTATAATTGTAGATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCCGTGGAGTTGCTACCACGGCAGCCAGATATATCAAAGTCTCGTCTGCGTATCGTGGTGCTTTATCCATTCATATTATAGTTTTTAAATATCTATTCACTTTCAGTGCATTCATCACTTCTTGTTTGATCTAATTGGTCATGAAGTAATGATTATATACACCAACAAAGTCTGCTGCTTTTACCTTAATTGTTTTTCTTTATCTGTATTCTATTATTGTTGATGCTATACAGTAGTCTGTGGAGGAAAATGTATTAATACCATTTTTTCTGCATGCAGCGCTAGTCATGCATTAGCTCCCGACTAACTTATTGTGCTTTTGCAGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTCGTAAAAGCTGCTGGTTTAGAGGTTAGCATCTGTTCTGACCTTAGTAGACACTTGTCCATTGCTGTGAGGAAGAAGAAATGTTTCATTTTACTTTTTTCATAATACTTTCTTAACAATAACGATAACAATGGGGAAGAAGAAATGTTTCATTTTCTTTTTAGGGGCCTTGTTGTATCTTTTTGTTCTTGTTGGTACCTCTGCACTGTAGGCCTTTGTTATAGTTAGCTATAGTTCATGATAGATTTTTTTTGAACTTATAAATATAAACATGTATTTACCTACCTTGTGTGAGTTTTTTTCCTGCCATTTATTCATGATAGCCACACTATATACTCGGACGTAAGGAAACTGGGAATATGACATCAAGGGAGATATCTTTTTAGTGCCATTTTAACTACTTGTTCTATTGCTTGCGTTTGTCTGCTAGTTCTATTTGCATGTGTAATTTCTGGAATTTATTGAAACAGATCTATTCATTAAAGCGTGTAAGGATCGGAGGCTTCAGACTTCCATCAGATTTGGGGTAATTTCTTGTTGTGATCACCTTTGATTTATTTTTTATTTGTCAAACTTATTATTGCTTGGGAATGGGTTCAAAATCAGATTAGATGACTCACTTGCAACTCATTTTCACATAACAAAAACCAAATAATTAAGGCAAACAATTACTCCTATTTTTGCATGTAAGTATTCGGAAATGTTGGTGACTAGTATGTTTCTAGGAAAATTGCATTAGATGACAAAAAAAAAAGGAAAATTGGAATGGATAACCATTTCAGCAATAATAATTAAGGATATAGCAAAATTTAAAAAAAATTGCAAATATAGCAAAACTATCCCTGATAGATTTGTATCGCTGATACACTTCGTATGGTCTATCAGTGATAGACCAATATTTGCAACATGGTCTATTGTTGATAGACTTATATCAATGATAGAATTTGAAAAATTTTGCTATATTTGCAAATTTTTTAAAATGTTGCTATATAATTTAATTATTTTGAATCTAATTGCTAAATTTGCAACTACCAAAAAAAAAAAATATAGAAAAAAACAGCTCACAACACCTCTTTTTTGCATATTGCAAATTTGACAAATATGGCTAGTAATTGACGGTAATCATACTGTAATTTACTTTTAAATTTGCCAGTTTTGCAATTTAGAAAATGTAGGTGACATGGACTCTGTTATCATAATTTTTTTTGCTATTTTTGTAGACTCGTGTTTCAGCATGTTACTATGATTTGCTGTCAGAATACTAACCAAATAAAAACACCTTTTTCAACCGAACAACAAAAACACCTATTTCAACCGAACAACGAAGATTTTAAAAGTTTATTCTTGAAGATAAATTGAAAATAAAACAGTTTTAATACTTGAAATAAATTTTATCACAAATGATGATCAGGTGGATATAATTCATTCTCTCTGTCAATTCTTTCTTCAAGATTCCCTTTTTATCTTCGGCCACAACCCTCAAGACTGCAACATATTTTCATTTTTTGTACAGTTTCTCGAGGTGAAACTAGAAAGACTTTGAAGTTTTAGCTGCTTACTTGTGAACATGAGTGAGATAAATGTGTTGCCATGTAGATTTTTTAAAAATTTCTGCATTATTTCAGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGAACTGAAGGCAATTGGTTGGAAAAGTTGA

mRNA sequence

ATGGTTTCATTAGCATCTTCTTCACTCTTACTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCATCCAATTCCAAACCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATTCCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCGTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTGAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTTGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTACCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAGGTATCTCACATCCTTCATCTGGTTTATCGAAGGAATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCCGTGGAGTTGCTACCACGGCAGCCAGATATATCAAAGTCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTCGTAAAAGCTGCTGGTTTAGAGATCTATTCATTAAAGCGTGTAAGGATCGGAGGCTTCAGACTTCCATCAGATTTGGGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGAACTGAAGGCAATTGGTTGGAAAAGTTGA

Coding sequence (CDS)

ATGGTTTCATTAGCATCTTCTTCACTCTTACTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCATCCAATTCCAAACCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATTCCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCGTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTGAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTTGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTACCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAGGTATCTCACATCCTTCATCTGGTTTATCGAAGGAATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCCGTGGAGTTGCTACCACGGCAGCCAGATATATCAAAGTCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTCGTAAAAGCTGCTGGTTTAGAGATCTATTCATTAAAGCGTGTAAGGATCGGAGGCTTCAGACTTCCATCAGATTTGGGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGAACTGAAGGCAATTGGTTGGAAAAGTTGA

Protein sequence

MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVSAGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS*

Homology

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BLAST of CsGy6G020880 vs. ExPASy Swiss-Prot
Match: Q8L960 (Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR1 PE=1 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 1.2e-142
Identity = 276/423 (65.25%), Postives = 318/423 (75.18%), Query Frame = 0


Query: 2   VSLASSSLLLLSKP-SLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 61
           +S A+S L + + P S  F PIR    + CS+        SSSSS  +EF+I+FAPPKPK
Sbjct: 10  ISFAASFLKIKAFPLSPRFFPIRT---LRCSV--------SSSSSEPIEFDISFAPPKPK 69

Query: 62  PKSEVEDPFQFIDRNSGG----QLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDET--KP 121
           P S             GG    QLFIPWIVR +DG LKLQS PP R +H+++ D T   P
Sbjct: 70  PSS-----------THGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNP 129

Query: 122 KKKKVS----------------AGKPITE---PPKHSKAARRFYNENIRESSQRLSKVLA 181
           KKK  S                A  P +     PK SKAARRFYNEN +E  QRLSKVLA
Sbjct: 130 KKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLA 189

Query: 182 AAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALN 241
           AAGVASRR+SEELIF G+VTVNG +CNTPQTRVDP+RDIIYVNGNR+PKKLPPKVY ALN
Sbjct: 190 AAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALN 249

Query: 242 KPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDG 301
           KPKGYICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI+VTNDG
Sbjct: 250 KPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDG 309

Query: 302 DFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISK 361
           DFAQ +SHPSS L KEYI  + G + K++L+AISEGT+++GVHC PDSVEL+P+Q DI +
Sbjct: 310 DFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPR 369

Query: 362 SRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIG 399
           +RLRIVVHEGRNHEVRELVK AGLE++SLKRVRIGGFRLPSDLGLG + ELKQSELKA+G
Sbjct: 370 ARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALG 410

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BLAST of CsGy6G020880 vs. ExPASy Swiss-Prot
Match: O67444 (Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1464 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.2e-34
Identity = 95/255 (37.25%), Postives = 138/255 (54.12%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           R++K L+ AGVASRR +E+LI  GRV VNG V  +   +V+P  DI+ V+G   P K   
Sbjct: 5   RINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGK--PVKPQR 64

Query: 209 KVYLALNKPKGYICSSGKKES--KSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATT 268
           K Y+ LNKP  Y+   G+     K++  L  D               R+F VGRLD  T 
Sbjct: 65  KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDI------------PERVFPVGRLDYNTE 124

Query: 269 GLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVEL 328
           GL+I+TNDG+ A  I HP   L K Y+A ++G V ++ L  + +G  ++     PD++ +
Sbjct: 125 GLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRI 184

Query: 329 LPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTEL 388
           +  + +   + L I  HEGR H V+  + A G ++  LKR+ IG  +L   L  G + EL
Sbjct: 185 V--RYEGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWREL 242

Query: 389 KQSEL----KAIGWK 398
            Q EL    KA+G K
Sbjct: 245 NQGELAQLFKAVGLK 242

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BLAST of CsGy6G020880 vs. ExPASy Swiss-Prot
Match: P35159 (Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rluB PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-31
Identity = 86/247 (34.82%), Postives = 132/247 (53.44%), Query Frame = 0


Query: 148 QRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLP 207
           +RL KV+A AGVASRR +EELI  G+V VNG V      +V    D I VNG ++ ++ P
Sbjct: 2   ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKV-TGSDQIEVNGLKVEREEP 61

Query: 208 PKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 267
             VY  L KP+G I ++   + + V++   D+ K+  +        R++ +GRLD  T+G
Sbjct: 62  --VYFLLYKPRGVISAAQDDKGRKVVT---DFFKNIPQ--------RIYPIGRLDYDTSG 121

Query: 268 LIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELL 327
           L+++TNDG+FA  + HP   + K Y+A + G   K+ L  +  G  ++     P   +LL
Sbjct: 122 LLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLL 181

Query: 328 PRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELK 387
                   S +++ +HEGRN +VR + +A G E+  LKR       L   L  G   EL 
Sbjct: 182 SLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNL-RGLHTGDARELT 233

Query: 388 QSELKAI 395
             E+K +
Sbjct: 242 PHEVKRL 233

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BLAST of CsGy6G020880 vs. ExPASy Swiss-Prot
Match: O05668 (Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strain TN) OX=272631 GN=ML1370 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-29
Identity = 89/247 (36.03%), Postives = 130/247 (52.63%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           RL K+L+ AG+ASRR++E+LI  GRV V+G +     TRVDP   ++ V+G ++      
Sbjct: 17  RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVVRVDGVKVVVD-DS 76

Query: 209 KVYLALNKPKG-YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 268
            VYLALNKP+G Y   S  +    V  L +  ++            +LF VGRLD  T G
Sbjct: 77  LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRG---------NKKLFHVGRLDADTEG 136

Query: 269 LIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELL 328
           LI++TNDG+ A  + HPS  +SK Y+A + G V +     +S G  +D      D   ++
Sbjct: 137 LILLTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVV 196

Query: 329 PRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELK 388
              P   K+ +R+ +HEGR   VR L+ AAG  +  L R  IG   L  D   G    L 
Sbjct: 197 DAIP--GKTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSL-GDQRPGCLRALL 250

Query: 389 QSELKAI 395
           + E++ +
Sbjct: 257 RDEIRQL 250

[Close]

BLAST of CsGy6G020880 vs. ExPASy Swiss-Prot
Match: P9WHQ0 (Uncharacterized RNA pseudouridine synthase MT1751.1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1751.1 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-29
Identity = 89/243 (36.63%), Postives = 130/243 (53.50%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           RL KVL+ AG+ASRR++E++I  GRV V+G V     TRVDP   ++ V+G R+      
Sbjct: 15  RLQKVLSQAGIASRRAAEKMIVDGRVEVDGHVVTELGTRVDPQVAVVRVDGARVVLD-DS 74

Query: 209 KVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGL 268
            VYLALNKP+G   +      +  I    D +   ++   G  K  LF VGRLD  T GL
Sbjct: 75  LVYLALNKPRGMHSTMSDDRGRPCIG---DLI---ERKVRGTKK--LFHVGRLDADTEGL 134

Query: 269 IIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLP 328
           +++TNDG+ A  + HPS  + K Y+A + G+V +     +  G  +D      D   ++ 
Sbjct: 135 MLLTNDGELAHRLMHPSHEVPKTYLATVTGSVPRGLGRTLRAGIELDDGPAFVDDFAVVD 194

Query: 329 RQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQ 388
             P   K+ +R+ +HEGRN  VR L+ AAG  + +L R  IG   L      GS   L+ 
Sbjct: 195 AIP--GKTLVRVTLHEGRNRIVRRLLAAAGFPVEALVRTDIGAVSLGKQRP-GSVRALRS 245

Query: 389 SEL 392
           +E+
Sbjct: 255 NEI 245

[Close]

BLAST of CsGy6G020880 vs. NCBI nr
Match: XP_004140075.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucumis sativus] >KGN48104.2 hypothetical protein Csa_003766 [Cucumis sativus])

HSP 1 Score: 779 bits (2012), Expect = 6.16e-284
Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 0


Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS
Sbjct: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
           IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398

[Close]

BLAST of CsGy6G020880 vs. NCBI nr
Match: XP_008456519.1 (PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumis melo])

HSP 1 Score: 745 bits (1924), Expect = 1.47e-270
Identity = 381/398 (95.73%), Postives = 387/398 (97.24%), Query Frame = 0


Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPSLIFN IRAIPRISCSLSSNS PNASSSSS   EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNASSSSS--FEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
           IYSLKRVRIGG+RLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAIGWKS 396

[Close]

BLAST of CsGy6G020880 vs. NCBI nr
Match: XP_038884576.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Benincasa hispida])

HSP 1 Score: 737 bits (1902), Expect = 3.58e-267
Identity = 375/398 (94.22%), Postives = 384/398 (96.48%), Query Frame = 0


Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPS I NPIRAIPRISCSLSSNS PNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSFILNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKSEVE PFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSEVEGPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR++SQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 ADKRPTEPPKHSKAARRFYNENIRDASQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLI+VTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLILVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGTIIDG+HCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGIHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
           IYSLKRVRIGGFRLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 398

[Close]

BLAST of CsGy6G020880 vs. NCBI nr
Match: XP_016901969.1 (PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis melo])

HSP 1 Score: 708 bits (1828), Expect = 3.07e-256
Identity = 363/379 (95.78%), Postives = 368/379 (97.10%), Query Frame = 0


Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPSLIFN IRAIPRISCSLSSNS PNASSSSS   EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNASSSSS--FEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 379
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]

BLAST of CsGy6G020880 vs. NCBI nr
Match: XP_022133495.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Momordica charantia])

HSP 1 Score: 704 bits (1816), Expect = 4.72e-254
Identity = 363/401 (90.52%), Postives = 378/401 (94.26%), Query Frame = 0


Query: 1   MVSLAS--SSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPK 60
           M SLA+  SSL +LSKPS I NPIRAIPRISCSLSSNS PNASSSS   LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAPNASSSSP--LEFNITFAPPK 60

Query: 61  PKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKK 120
           PKPKSE++ PFQFID N+GGQL IPWIVRGEDGNL+LQSHPPTRFL S+SE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSAGKPITEPP-KHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVN 180
            SA K + EPP KHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARD+IYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAID 300
           DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAID
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAA 360
           G VSKQNLIAISEGTIIDGVHCTPDSVELLPRQPD+S+SRLRIVVHEGRNHEVRELVKAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

Query: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
           GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399

[Close]

BLAST of CsGy6G020880 vs. ExPASy TrEMBL
Match: A0A1S3C3I9 (uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 745 bits (1924), Expect = 7.14e-271
Identity = 381/398 (95.73%), Postives = 387/398 (97.24%), Query Frame = 0


Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPSLIFN IRAIPRISCSLSSNS PNASSSSS   EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNASSSSS--FEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
           IYSLKRVRIGG+RLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAIGWKS 396

[Close]

BLAST of CsGy6G020880 vs. ExPASy TrEMBL
Match: A0A1S4E166 (ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 708 bits (1828), Expect = 1.49e-256
Identity = 363/379 (95.78%), Postives = 368/379 (97.10%), Query Frame = 0


Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSSL  LSKPSLIFN IRAIPRISCSLSSNS PNASSSSS   EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNASSSSS--FEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 379
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]

BLAST of CsGy6G020880 vs. ExPASy TrEMBL
Match: A0A6J1BVE6 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006060 PE=3 SV=1)

HSP 1 Score: 704 bits (1816), Expect = 2.28e-254
Identity = 363/401 (90.52%), Postives = 378/401 (94.26%), Query Frame = 0


Query: 1   MVSLAS--SSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPK 60
           M SLA+  SSL +LSKPS I NPIRAIPRISCSLSSNS PNASSSS   LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAPNASSSSP--LEFNITFAPPK 60

Query: 61  PKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKK 120
           PKPKSE++ PFQFID N+GGQL IPWIVRGEDGNL+LQSHPPTRFL S+SE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSAGKPITEPP-KHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVN 180
            SA K + EPP KHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARD+IYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAID 300
           DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAID
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAA 360
           G VSKQNLIAISEGTIIDGVHCTPDSVELLPRQPD+S+SRLRIVVHEGRNHEVRELVKAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

Query: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
           GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399

[Close]

BLAST of CsGy6G020880 vs. ExPASy TrEMBL
Match: A0A6J1GVH4 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457913 PE=3 SV=1)

HSP 1 Score: 703 bits (1814), Expect = 4.44e-254
Identity = 357/398 (89.70%), Postives = 374/398 (93.97%), Query Frame = 0


Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA+SSL +LSKPSLI NPIRAI RISCSLSSNS PN SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+ +D FQFID+N+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI +SRLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
           IYSLKRVRIGGFRLPSDLGLGSY ELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQSDLKAIGWKS 398

[Close]

BLAST of CsGy6G020880 vs. ExPASy TrEMBL
Match: A0A6J1JT41 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487252 PE=3 SV=1)

HSP 1 Score: 700 bits (1807), Expect = 5.17e-253
Identity = 355/398 (89.20%), Postives = 373/398 (93.72%), Query Frame = 0


Query: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA+SSL +LSKPSLI NPIRAI RISCSLSSNS PN SSSSSSS+EFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSMEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120
           PKS+ +D FQFID+N+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI +SRLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
           IYSLKRVRIGGFRLPSDLGLGSY ELKQ +LKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQCDLKAIGWKS 398

[Close]

BLAST of CsGy6G020880 vs. TAIR 10
Match: AT2G39140.1 (pseudouridine synthase family protein )

HSP 1 Score: 507.7 bits (1306), Expect = 8.6e-144
Identity = 276/423 (65.25%), Postives = 318/423 (75.18%), Query Frame = 0


Query: 2   VSLASSSLLLLSKP-SLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 61
           +S A+S L + + P S  F PIR    + CS+        SSSSS  +EF+I+FAPPKPK
Sbjct: 10  ISFAASFLKIKAFPLSPRFFPIRT---LRCSV--------SSSSSEPIEFDISFAPPKPK 69

Query: 62  PKSEVEDPFQFIDRNSGG----QLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDET--KP 121
           P S             GG    QLFIPWIVR +DG LKLQS PP R +H+++ D T   P
Sbjct: 70  PSS-----------THGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNP 129

Query: 122 KKKKVS----------------AGKPITE---PPKHSKAARRFYNENIRESSQRLSKVLA 181
           KKK  S                A  P +     PK SKAARRFYNEN +E  QRLSKVLA
Sbjct: 130 KKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLA 189

Query: 182 AAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALN 241
           AAGVASRR+SEELIF G+VTVNG +CNTPQTRVDP+RDIIYVNGNR+PKKLPPKVY ALN
Sbjct: 190 AAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALN 249

Query: 242 KPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDG 301
           KPKGYICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI+VTNDG
Sbjct: 250 KPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDG 309

Query: 302 DFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISK 361
           DFAQ +SHPSS L KEYI  + G + K++L+AISEGT+++GVHC PDSVEL+P+Q DI +
Sbjct: 310 DFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPR 369

Query: 362 SRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIG 399
           +RLRIVVHEGRNHEVRELVK AGLE++SLKRVRIGGFRLPSDLGLG + ELKQSELKA+G
Sbjct: 370 ARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALG 410

[Close]

BLAST of CsGy6G020880 vs. TAIR 10
Match: AT3G43340.1 (Pseudouridine synthase family protein )

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-26
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 306 IAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLK 365
           +AISEGT+++G+HC PD VEL+P+Q DI ++ LRIVVHEGRNHEVRELVK  GLE+ SLK
Sbjct: 1   MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLEVDSLK 60

Query: 366 RVRIGGFRLPSDLG 380
           RVRIGG RLPSDLG
Sbjct: 61  RVRIGGVRLPSDLG 74

The following BLAST results are available for this feature:

BLAST of CsGy6G020880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L960	1.2e-142	65.25	Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=A...	[more]
O67444	4.2e-34	37.25	Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain V...	[more]
P35159	4.3e-31	34.82	Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 16...	[more]
O05668	1.4e-29	36.03	Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strai...	[more]
P9WHQ0	1.8e-29	36.63	Uncharacterized RNA pseudouridine synthase MT1751.1 OS=Mycobacterium tuberculosi...	[more]

BLAST of CsGy6G020880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140075.1	6.16e-284	100.00	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc...	[more]
XP_008456519.1	1.47e-270	95.73	PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumi...	[more]
XP_038884576.1	3.58e-267	94.22	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Ben...	[more]
XP_016901969.1	3.07e-256	95.78	PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis ...	[more]
XP_022133495.1	4.72e-254	90.52	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Mom...	[more]

BLAST of CsGy6G020880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3I9	7.14e-271	95.73	uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX...	[more]
A0A1S4E166	1.49e-256	95.78	ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3...	[more]
A0A6J1BVE6	2.28e-254	90.52	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=M...	[more]
A0A6J1GVH4	4.44e-254	89.70	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C...	[more]
A0A6J1JT41	5.17e-253	89.20	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C...	[more]

BLAST of CsGy6G020880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39140.1	8.6e-144	65.25	pseudouridine synthase family protein	[more]
AT3G43340.1	3.3e-26	74.32	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 148..207 e-value: 8.3E-14 score: 61.9
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 148..190 e-value: 5.9E-11 score: 41.9
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 148..215 e-value: 2.7474E-10 score: 54.1778
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 211..390 e-value: 1.2E-46 score: 160.3
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 211..353 e-value: 2.6E-16 score: 60.1
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 144..204 e-value: 4.6E-18 score: 66.2
IPR042092	Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain	GENE3D	3.30.70.1560		coord: 288..373 e-value: 1.2E-46 score: 160.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..132
None	No IPR available	PANTHER	PTHR47683	PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED	coord: 40..397
None	No IPR available	PROSITE	PS50889	S4	coord: 148..217 score: 14.281917
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 127..230
IPR018496	Pseudouridine synthase, RsuA/RluB/E/F, conserved site	PROSITE	PS01149	PSI_RSU	coord: 259..273
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 210..391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G020880.1	CsGy6G020880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000488	maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process	GO:0000489	maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process	GO:0032544	plastid translation
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016866	intramolecular transferase activity