CsGy6G020615 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G020615
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr6: 21324205 .. 21324488 (-)
RNA-Seq ExpressionCsGy6G020615
SyntenyCsGy6G020615
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGGTAAGTACATACAGAGAGGAAAAAGAGTTGAAAAGGTTACCAACGCCATTGATTATTTATTTGAAGCATGAAAAGGAATTTGTCGTTACTGTAGTAAGTGGAATGCACAGTGAAGGCACTGTTCTGAGTAGGTCAGAAGGAACGAGCGACAAAGGTACGGAAGCAACCAAAGGCAATGGCAAGTGGATAGGCAGTGGTGCCCAACTCAGGCGGAGCCGCTGA

mRNA sequence

ATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGTGAAGGCACTGTTCTGAGTAGGTCAGAAGGAACGAGCGACAAAGGTACGGAAGCAACCAAAGGCAATGGCAAGTGGATAGGCAGTGGTGCCCAACTCAGGCGGAGCCGCTGA

Coding sequence (CDS)

ATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGTGAAGGCACTGTTCTGAGTAGGTCAGAAGGAACGAGCGACAAAGGTACGGAAGCAACCAAAGGCAATGGCAAGTGGATAGGCAGTGGTGCCCAACTCAGGCGGAGCCGCTGA

Protein sequence

MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR*
Homology
[Close]
BLAST of CsGy6G020615 vs. NCBI nr
Match: KGN47820.1 (hypothetical protein Csa_004346 [Cucumis sativus])

HSP 1 Score: 110 bits (276), Expect = 1.82e-30
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR 57
          MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR
Sbjct: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR 57

[Close]
BLAST of CsGy6G020615 vs. NCBI nr
Match: TYK00024.1 (putative aquaporin PIP2-5 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 2.19e-05
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 19 LNCEGTVLSRSEGTSDKGTEATKGNGKW 46
          ++ EGTVLS SEGT+DKGTEATKGNGKW
Sbjct: 56 MHSEGTVLSGSEGTNDKGTEATKGNGKW 83

[Close]
BLAST of CsGy6G020615 vs. NCBI nr
Match: KAA0036463.1 (putative aquaporin PIP2-5 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 2.30e-05
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 19 LNCEGTVLSRSEGTSDKGTEATKGNGKW 46
          ++ EGTVLS SEGT+DKGTEATKGNGKW
Sbjct: 56 MHSEGTVLSGSEGTNDKGTEATKGNGKW 83

[Close]
BLAST of CsGy6G020615 vs. ExPASy TrEMBL
Match: A0A0A0KDN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405330 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 8.82e-31
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR 57
          MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR
Sbjct: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR 57

[Close]
BLAST of CsGy6G020615 vs. ExPASy TrEMBL
Match: A0A5D3BL63 (Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00690 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.06e-05
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 19 LNCEGTVLSRSEGTSDKGTEATKGNGKW 46
          ++ EGTVLS SEGT+DKGTEATKGNGKW
Sbjct: 56 MHSEGTVLSGSEGTNDKGTEATKGNGKW 83

[Close]
BLAST of CsGy6G020615 vs. ExPASy TrEMBL
Match: A0A5A7T0Q3 (Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00320 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.11e-05
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 19 LNCEGTVLSRSEGTSDKGTEATKGNGKW 46
          ++ EGTVLS SEGT+DKGTEATKGNGKW
Sbjct: 56 MHSEGTVLSGSEGTNDKGTEATKGNGKW 83

The following BLAST results are available for this feature:
BLAST of CsGy6G020615 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy6G020615 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47820.11.82e-30100.00hypothetical protein Csa_004346 [Cucumis sativus][more]
TYK00024.12.19e-0582.14putative aquaporin PIP2-5 [Cucumis melo var. makuwa][more]
KAA0036463.12.30e-0582.14putative aquaporin PIP2-5 [Cucumis melo var. makuwa][more]
BLAST of CsGy6G020615 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDN28.82e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405330 PE=4 SV=1[more]
A0A5D3BL631.06e-0582.14Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7T0Q31.11e-0582.14Putative aquaporin PIP2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
BLAST of CsGy6G020615 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G020615.1CsGy6G020615.1mRNA