CsGy6G020395 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G020395
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	zinc finger HIT domain-containing protein 3
Location	Gy14Chr6: 21152463 .. 21155971 (+)
RNA-Seq Expression	CsGy6G020395
Synteny	CsGy6G020395

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTCGGAAATGTCAGGTTTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTAGTAAGACAAACAATAAAATTTGTTTTAGGTTGTTTTTGCGTAGTTTTTAATGAAAAGTCTGACCTTCATTCATTTGTGTGCTGGCCTCTTCCTTTCACTTTGCTTGAAGCTGCTCTCTGGTATGTTTTAAGAAACACAAAGGTGCTGTTCTTTTGGACTTAGTTTTTTATTATTGTATTTATGTTCTATAAATTTGTATGAAGTTTCATGTTCAGACGGTCTACTGTTCTAGTTGGCTATTTATTTTGGGACAATTTCATGATGTGGTGAAATCGCTAGTTGTCTAGATCATTGCTACTTGTTCTTTGTTATGAATTTTAACTCACTGCCCAAGTTTAAAGCAGATCATTGTTCTAAGTTCCCTTGCCTGTACTTTTACCTTCTTTAACGGATTAGTTGATGCTAACTGGAGGGTCGGGTATCTGTTTAAGATTTGAATGTACTGGTCATGTTCTTTCAAGTTGAGTTACTCTTGAATGTCTGCTCCAATAAGTGGTTCATAGACTGTTCTTTTACGTTATACATTGGAAGACCTCCAAATTTTAGACTAAGTTAGGAAATTTATTAATTTATCTATTGCGAGCTAGACTCTTGGAGAGATGTTGATCATATTCGATATGCAGAAGTTTAACGTAATCTTGGGCATGAATTGGTTAGTTGCTAACCAAACCACCATCGATTGTGTCAAGAAGGAAACCCCTTGCGGACTGACATATGACCTAAATTAAGTTCAAAGGTGCAATGCATGGAAGTCCAAATGCTGTGAACATTAGCGTAGCATGGGGCTTTGGTGTATTTGTCAAATGTTGTGAATATTTGATGTATCCTAAGTAACCTCAAGGAGAAATCCTCCAAGAACCAAGATTGTGAATCTTTTATGAAAATGAGTAATGTGCTTCATACAAGAGGAGATGACTCATATTTATAGAGTTCTATTACAAGTGGGGGTAAAAAGGAAATTAACCTAGAATATTAGCTAATTACTCAATTAACCCTTAGTTTTCTCACATCATTCTACCCCTCCAAAAAGAAAACATGTCCTGAGTTTTAAAAAGAAGAAATTTATGAAGAAAAAGAATGAAATAAACTTGTTCAATGGAGTATGACCAAGCCACCTTGTTCAACAAAGTATGACCAAGCTAACCTCCTACGTTTTGTACAAAAATATTATGATCAAGGGGATAAAATCGAGACAAAAAAATCAGATATGGCGACTAAAAGATGAACCTTTTCATCAGCCGTAAACTCGAAAAAGTTGTTCCTTTAATCTCACTCGAAAATGTATTCAAAGAATCAATCTCAAAAGAATTAGCTTTCGAAGAGTATCCTTGAAGAATCACATTTTCTTTATCATTCCCTTCAAGTTCTTCAACGGTTTGGTAATTCGTTTCCACCGAAACCAATGTGTCGTTCTTATTCGATTTTTGCTTGGTGTTCGATACTTTTTTTTCATCTTCTTTGTTGGATTTTTCTTCACTTGTGACCATATCCAAATCAACTTTTTCAAATTCTTGTTCTTCAATTTTATCTTCAAGATTTTCTATTTGAAAAATTTTCAACCGTGATTCCTTTGTTTTTTCGTCCGTATATGAAACCAATTCCTTCTTGAACTCTTGCAAATGAATTGATAGTTGTATGTTGAGTCATTTCCTCCAATGAGAGTTGAATTTCTTTTGTTGTTTTCTTTATTTCCTCCATTGCTGCAGGATCAAAGTAGTTATTTTGTTGGATTCTTGAATATGTTGCAATCTCATAGCACGTGTAAGACTCATCCATTGATTTTCTTGAATTAACCTTTCTTGATCGTGTTTCATAACCAAAAGAGTAATTTTGAGCCTTGAATGTTCTTCCTGGATGGTTAAAGTCTATTCTTGATGATTTTTTAATTCATCCAACTCCCAATCTTTACATTGATTTCTTGAAAAATGGGTTTGATCGGATTGTTTGGGTCATTTTTTTGACATTGTTGCCTTCTTATTCAGTCCCAAACAGCCTTAGAGAAATCATTGGAGTCACTAGAATCAGTAGAACAAATTTCCAATGTGGATTATGATAGGTTCTTTGAGAAAATTGAGCATGGTCAAAAAGTTTTAATTCATACTTCAGGCAGTTTCCTTTAAGTAGTAATTTTCTGTTTGGTTTTAATGACCTTGGTATCGTAATTGAGTTTAAATACTTAAAAAAAAGTTATTGACATTCTCTAGTTTAGTCTGAAATTTGGGGGCGTTTCACATGCCATCTGTGGTTAGCATTCAATTCTGTTGCTATGATAACTTGTGTCGTTTGCAACTTGTGCAGAAGTGCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAGTCAAGTAAGTCTATACTCACGTTTCATTTATTCAAATATGTCATGTATGTCAGGATCGCTCAATAATTGTCTATTTGATTCCTTCCAGATTTTATCCTTGTTCATTCTTTGGGTATTCATCATACTTGCTGACCTTTTTTATTCTTTCCATCTAAAGCTGCTTGCAACGGAACATTTGTGGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGGTATTAATTCATATTTACTGATTTTATTACCTCAATTTATACATGATCATATTTGGTCCCAAAAAACACTTGACATGCATTTCTAATTCTTACAAGAGTCAGACGAATTTCAAGGGTTATGTGAGACAGAAATCTTCAAAATCTCATGGTTGCAAAATGTTTACTAGATTAGATCATATGAAAAATCTAGTATATAACAACCTTCTCTCGGACATTTGTTTGGTTAACGTTCTGAAGCTTTGGATAGGAAAATATCATTTGAGAAGGGATCAAGTTTGGAAGGTTGGACGTGACAATTTGTATGTCAAGGCGAAACTAGGAATGGAAACTATGTTTTATCACATTTTTATTTACGCATCAAGAATAATTTTGTTGCTAGTTGTAAAAGCATTATTGAACTTACAATCTAGGTTTCTACGCATCTTTCTTACAGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAAGTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACTGTGAGTATTTTGCATCTTCCATTACGTGAGGAATTATACTCCTAACCAACTTCTTGCTCCATTATAGTCTATCATCTACGAACCGTTGTAAATGTGAATATCAATAGTTAAAAACGTTTGTTTAAGTTGGTTGTTGTTCTTATTAGGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGGTACTATTTTTAATATCTTTTATCATCTGTGACTTGTGATGCAGTCGTCATGAGCATGCCGGATAAATATTTTGGTTTGTTTTAAGCATTTATTCTCTCTGTTGGTTAGATATCATCCATCATCAACTCTTAG

mRNA sequence

ATGGCTCCTCGGAAATGTCAGGTTTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTATGTTTTAAGAAACACAAAGAAGTGCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAGTCAACTGCTTGCAACGGAACATTTGTGGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAAGTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACTGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAACTCTTAG

Coding sequence (CDS)

ATGGCTCCTCGGAAATGTCAGGTTTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTATGTTTTAAGAAACACAAAGAAGTGCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAGTCAACTGCTTGCAACGGAACATTTGTGGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAAGTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACTGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAACTCTTAG

Protein sequence

MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS*

Homology

[Close]

BLAST of CsGy6G020395 vs. ExPASy Swiss-Prot
Match: Q15649 (Zinc finger HIT domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZNHIT3 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-06
Identity = 36/143 (25.17%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 6   CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE----------------VPC-AIKPVSEGD 65
           C +C E P KY+CP C  PYCS+VCF+KHKE                +P   +KPV   D
Sbjct: 11  CVICLEKP-KYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKD 70

Query: 66  QSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPE 125
              +    F++      ++ + +    L+ +  S+ + ++L +  L++ ++ +D   D  
Sbjct: 71  DDDSI-ADFLNS----DEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQGEDKA 130

Query: 126 TEVDKAMEDEAFRIFSSKISSII 132
             +   M++  F  F+     I+
Sbjct: 131 KLMRAYMQEPLFVEFADCCLGIV 147

[Close]

BLAST of CsGy6G020395 vs. ExPASy Swiss-Prot
Match: Q2KIH1 (Zinc finger HIT domain-containing protein 3 OS=Bos taurus OX=9913 GN=ZNHIT3 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-05
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 6  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPV 45
          C VC E P KY+CP C  PYCSL CF+KHK  P    PV
Sbjct: 11 CVVCLEKP-KYRCPACRVPYCSLPCFRKHKAPPLQQLPV 48

[Close]

BLAST of CsGy6G020395 vs. ExPASy Swiss-Prot
Match: Q9CQK1 (Zinc finger HIT domain-containing protein 3 OS=Mus musculus OX=10090 GN=Znhit3 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-05
Identity = 33/136 (24.26%), Postives = 65/136 (47.79%), Query Frame = 0


Query: 6   CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIK----------PVSEGDQSTACNG 65
           C VC E P KY+CP C  PYCS+ CF+KHKE  C+ +          P    ++S   + 
Sbjct: 11  CVVCLEKP-KYRCPTCRVPYCSVPCFQKHKE-QCSSEARPVEKRRAGPPVRSEESKDDDS 70

Query: 66  TFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAM 125
           +  D  +   ++ + +    L+ +  S  + ++L +  L++ ++++D   +    +   M
Sbjct: 71  SVADF-LNSDEEEDRVSLQNLKNLGESETLRSLLLNPHLRQLMISLDQGDNKAKLMRACM 130

Query: 126 EDEAFRIFSSKISSII 132
           ++  F  F+     I+
Sbjct: 131 QEPLFVEFADCCLGIV 143

[Close]

BLAST of CsGy6G020395 vs. ExPASy Swiss-Prot
Match: Q6UIM1 (Zinc finger HIT domain-containing protein 3 (Fragment) OS=Macaca mulatta OX=9544 GN=ZNHIT3 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 35/143 (24.48%), Postives = 64/143 (44.76%), Query Frame = 0


Query: 6   CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE----------------VPC-AIKPVSEGD 65
           C +C E P KY+CP C  PYCS+ CF+KHKE                +P    KPV   D
Sbjct: 3   CVICLEKP-KYRCPACRVPYCSVACFRKHKEQCNPEARPVEKKIRSALPTKTXKPVENKD 62

Query: 66  QSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPE 125
              +    F++      ++ + +    L+ +  S+ + ++L +  L++ ++ +D   D  
Sbjct: 63  DDDSI-ADFLNS----DEEEDRVSLQNLKNLGKSATLRSLLLNPHLRQLMVNLDQGEDKA 122

Query: 126 TEVDKAMEDEAFRIFSSKISSII 132
             +   M++  F  F+     I+
Sbjct: 123 KLMRAYMQEPLFVEFADCCLGIV 139

[Close]

BLAST of CsGy6G020395 vs. ExPASy Swiss-Prot
Match: O36031 (Uncharacterized zinc-finger protein C4F10.19c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4F10.19c PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 6  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHK 36
          C +CNE+  KYKCP C  PYCSL C+K H+
Sbjct: 4  CSICNESEIKYKCPKCSFPYCSLPCWKIHQ 33

[Close]

BLAST of CsGy6G020395 vs. NCBI nr
Match: XP_004146755.1 (zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus] >KGN47795.1 hypothetical protein Csa_004183 [Cucumis sativus])

HSP 1 Score: 270 bits (691), Expect = 2.08e-91
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR
Sbjct: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
           RIFSSKISSIINS
Sbjct: 121 RIFSSKISSIINS 133

[Close]

BLAST of CsGy6G020395 vs. NCBI nr
Match: XP_008464779.1 (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo] >XP_008464780.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 251 bits (641), Expect = 8.81e-84
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           MAPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTA NG+FVDR
Sbjct: 1   MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKL+KFILAIDSS DPETE+DKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETELDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
           RIFSSKISSII+S
Sbjct: 121 RIFSSKISSIISS 133

[Close]

BLAST of CsGy6G020395 vs. NCBI nr
Match: XP_031743372.1 (zinc finger HIT domain-containing protein 3 isoform X2 [Cucumis sativus] >XP_031743373.1 zinc finger HIT domain-containing protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 227 bits (579), Expect = 3.99e-74
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR
Sbjct: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPET 109
           PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPET
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPET 109

[Close]

BLAST of CsGy6G020395 vs. NCBI nr
Match: XP_022157884.1 (zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia])

HSP 1 Score: 226 bits (577), Expect = 4.90e-74
Identity = 114/133 (85.71%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTA NG+ VDR
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICV DQ+EVLEKSQLEAIASSSEI N LNDE LQK I AI SSPDPETE+D+AMEDEAF
Sbjct: 61  PICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
           RIFSSKISSII S
Sbjct: 121 RIFSSKISSIIGS 132

[Close]

BLAST of CsGy6G020395 vs. NCBI nr
Match: XP_038886971.1 (zinc finger HIT domain-containing protein 3 [Benincasa hispida] >XP_038886972.1 zinc finger HIT domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 224 bits (571), Expect = 4.16e-73
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCAI+PVS GDQ TA NG+ VDR
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCAIEPVSAGDQPTAPNGSLVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PI V DQNE+LEK QLEAIASSSEIH+ LN E+LQK ILAIDSSPDPETE+DKAMEDEAF
Sbjct: 61  PIYVRDQNEILEKLQLEAIASSSEIHSDLNHERLQKLILAIDSSPDPETELDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
            IFS+KISSII S
Sbjct: 121 HIFSTKISSIIGS 133

[Close]

BLAST of CsGy6G020395 vs. ExPASy TrEMBL
Match: A0A0A0KDK5 (HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G403610 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 1.01e-91
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR
Sbjct: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
           RIFSSKISSIINS
Sbjct: 121 RIFSSKISSIINS 133

[Close]

BLAST of CsGy6G020395 vs. ExPASy TrEMBL
Match: A0A1S3CM88 (zinc finger HIT domain-containing protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502587 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 4.27e-84
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           MAPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTA NG+FVDR
Sbjct: 1   MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKL+KFILAIDSS DPETE+DKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETELDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
           RIFSSKISSII+S
Sbjct: 121 RIFSSKISSIISS 133

[Close]

BLAST of CsGy6G020395 vs. ExPASy TrEMBL
Match: A0A6J1DXU2 (zinc finger HIT domain-containing protein 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024491 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 2.37e-74
Identity = 114/133 (85.71%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTA NG+ VDR
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICV DQ+EVLEKSQLEAIASSSEI N LNDE LQK I AI SSPDPETE+D+AMEDEAF
Sbjct: 61  PICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
           RIFSSKISSII S
Sbjct: 121 RIFSSKISSIIGS 132

[Close]

BLAST of CsGy6G020395 vs. ExPASy TrEMBL
Match: A0A6J1JZX2 (zinc finger HIT domain-containing protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111491210 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 8.88e-70
Identity = 109/133 (81.95%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS A NG+ VDR
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPC-VKPVSAEDQSIAPNGSPVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           P+ VGDQNEVLEK+QLEAIASSSEI N LNDEKL+  I AIDSSPDPE E+DKAMEDEAF
Sbjct: 61  PVFVGDQNEVLEKTQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
           RI SSKISSII S
Sbjct: 121 RILSSKISSIIGS 132

[Close]

BLAST of CsGy6G020395 vs. ExPASy TrEMBL
Match: A0A6J1ESW0 (zinc finger HIT domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111437419 PE=4 SV=1)

HSP 1 Score: 212 bits (540), Expect = 1.04e-68
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS A NG+ VDR
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPC-VKPVSAEDQSIAPNGSPVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           P+ VGDQNEVLEK+QLEAIASSSEI N LNDEKL+  I AIDSSPDPE E+DKAMEDEAF
Sbjct: 61  PVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 133
           RI S KISSI+ S
Sbjct: 121 RILSGKISSIMGS 132

[Close]

BLAST of CsGy6G020395 vs. TAIR 10
Match: AT4G28820.2 (HIT-type Zinc finger family protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 71/162 (43.83%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 2   APRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCA---------IKPVS------- 61
           A + C++C +  SKYKCP CL PYCSL CFK HKE PCA          KP S       
Sbjct: 5   ATQTCEICEKVVSKYKCPSCLVPYCSLGCFKIHKETPCAKPSDPSSTEEKPASPAKEVPV 64

Query: 62  ---------------EGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILN 121
                          +   ++      V RPI V ++  +LEK+Q EAIASSSEI   L 
Sbjct: 65  KRPEEANDVVEKTQQKASAASPAKEIPVARPIIVEEEKYILEKTQFEAIASSSEIREALK 124

Query: 122 DEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN 133
           DE LQK I +IDSS +P  E+D+AM  EAFR F+ KI S I+
Sbjct: 125 DEPLQKLIYSIDSSSNPLQELDEAMGIEAFREFTDKILSNIS 166

[Close]

BLAST of CsGy6G020395 vs. TAIR 10
Match: AT4G28820.1 (HIT-type Zinc finger family protein )

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-26
Identity = 74/164 (45.12%), Postives = 89/164 (54.27%), Query Frame = 0


Query: 2   APRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKP------------------ 61
           A + C++C +  SKYKCP CL PYCSL CFK HKE PCA KP                  
Sbjct: 5   ATQTCEICEKVVSKYKCPSCLVPYCSLGCFKIHKETPCA-KPSDPSSTEEKPAASPAKEV 64

Query: 62  ----------VSEGDQSTACNGT-----FVDRPICVGDQNEVLEKSQLEAIASSSEIHNI 121
                     V E  Q  A   +      V RPI V ++  +LEK+Q EAIASSSEI   
Sbjct: 65  PVKRPEEANDVVEKTQQKASAASPAKEIPVARPIIVEEEKYILEKTQFEAIASSSEIREA 124

Query: 122 LNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN 133
           L DE LQK I +IDSS +P  E+D+AM  EAFR F+ KI S I+
Sbjct: 125 LKDEPLQKLIYSIDSSSNPLQELDEAMGIEAFREFTDKILSNIS 167

The following BLAST results are available for this feature:

BLAST of CsGy6G020395 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15649	3.6e-06	25.17	Zinc finger HIT domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZNHIT3 PE...	[more]
Q2KIH1	1.4e-05	58.97	Zinc finger HIT domain-containing protein 3 OS=Bos taurus OX=9913 GN=ZNHIT3 PE=2...	[more]
Q9CQK1	1.8e-05	24.26	Zinc finger HIT domain-containing protein 3 OS=Mus musculus OX=10090 GN=Znhit3 P...	[more]
Q6UIM1	3.0e-05	24.48	Zinc finger HIT domain-containing protein 3 (Fragment) OS=Macaca mulatta OX=9544...	[more]
O36031	1.2e-04	60.00	Uncharacterized zinc-finger protein C4F10.19c OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of CsGy6G020395 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146755.1	2.08e-91	100.00	zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus] >KGN477...	[more]
XP_008464779.1	8.81e-84	93.98	PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]...	[more]
XP_031743372.1	3.99e-74	100.00	zinc finger HIT domain-containing protein 3 isoform X2 [Cucumis sativus] >XP_031...	[more]
XP_022157884.1	4.90e-74	85.71	zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]	[more]
XP_038886971.1	4.16e-73	83.46	zinc finger HIT domain-containing protein 3 [Benincasa hispida] >XP_038886972.1 ...	[more]

BLAST of CsGy6G020395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDK5	1.01e-91	100.00	HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G403610 PE...	[more]
A0A1S3CM88	4.27e-84	93.98	zinc finger HIT domain-containing protein 3 isoform X1 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1DXU2	2.37e-74	85.71	zinc finger HIT domain-containing protein 3 isoform X1 OS=Momordica charantia OX...	[more]
A0A6J1JZX2	8.88e-70	81.95	zinc finger HIT domain-containing protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1ESW0	1.04e-68	80.45	zinc finger HIT domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of CsGy6G020395 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28820.2	1.1e-26	43.83	HIT-type Zinc finger family protein	[more]
AT4G28820.1	2.5e-26	45.12	HIT-type Zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007529	Zinc finger, HIT-type	PFAM	PF04438	zf-HIT	coord: 4..32 e-value: 4.0E-10 score: 39.4
IPR007529	Zinc finger, HIT-type	PROSITE	PS51083	ZF_HIT	coord: 6..39 score: 11.087504
None	No IPR available	GENE3D	3.30.60.190		coord: 2..47 e-value: 1.8E-12 score: 48.8
None	No IPR available	PANTHER	PTHR13483	UNCHARACTERIZED	coord: 5..132
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 4..37
IPR040197	Zinc finger HIT domain-containing protein 3	PANTHER	PTHR13483:SF11	ZINC FINGER HIT DOMAIN-CONTAINING PROTEIN 3	coord: 5..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G020395.1	CsGy6G020395.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000492	box C/D snoRNP assembly
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0048254	snoRNA localization
cellular_component	GO:0005634	nucleus
cellular_component	GO:0070761	pre-snoRNP complex
molecular_function	GO:0046872	metal ion binding