CsGy6G020320 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G020320
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCLAVATA3/ESR (CLE)-related protein 25-like
LocationGy14Chr6: 21093916 .. 21095629 (-)
RNA-Seq ExpressionCsGy6G020320
SyntenyCsGy6G020320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAAATACACAAAACAAAGTTAAAGATGAGTGTGTCGTATTTATTCTTCTCAGTATAAAGCAAACAGATGGGTTCCCTCCATCTCACGTTTGAAGCCATTATTATTGTTTTCTCTTTTCTTTTTTTGTTTTCTCAATCTCTCTAGGTTCGAGAAAGTGCAATAGAATCCTAAAGAGAAAACCCAATAACACCAAACCACCTTTGAATAAAACCCTTTGTTTTCAACCAAAATATATAACACAAAACAAACTTCACTTCAAACAAATTACACCAATTTCTTTTCTCTCTTTTCTTCTCTCAACATAACCCAAAATCAAAATCCTGTCATGTAGTGAGTTCAGAGAGAGAGAGAGAGAAGAGAGCAGAAAAAATGACTTGTTATTGTTCTTCTTGTAAGTTTGGTTCACTTCTCCTTATGGCTTTTATTTGGCTTTTGTTGGCAAATGGTTCGTGTCAAAGGAAAGAACCCGTCGTGGTGGGGAAGGTGACGACAGCGACGGGAGATGAAATTAGTGGAATTTCCAAAGAGACGACAGTGGCAGTCGGCGGCGGTCGTGGCGGAAAGGTTGTTGATCATCCAGAATGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCAATTCATAATCGGTATGACAATGTTTTTTTTAGTTCAACTATATAAGTTGAGAATAGAGGTTTGAACTTTCAACAATTTTAAGAGCAATGATTAGACTACACCTAACTCCATGCTCTATGTTTCTTTTAAAAGAAAAATAAGTTGACACGTGACAATTTACGAATTTTTTCTAATCAAAATTATAATACCTTTTAATTAGCAATTGAGTTATATATGGAAACATTACGTGGTTGTATATATATGTTTGAAATCTTATCTTGTTATTTATTTATTTATTATTTGCTTCACTAAAAAGAAAAAAAGAAGTGGGAAATTTAAGAAAGTATATTTGATAGATTTAGAGCGAGAGAGAGAAATAAGAATTAGAAAAAGAAAGATAGGAGTGGGAGAGATAAAAAGTTGAAATTTTAATAACTTTGCCTTTTAAAACTGTTACATTGAGTTTCTTTTAGCTTAAAAAGGGTGTCATTTAAAGTCACTCTTGGTTGAAGGTGAGAGAGACACAAACATCTTTAAAACCACAGTAAATAAAAGTATGTATTTTGTGTGTACTTCAATATATTCCATCCCCCCCTTTTCCTTAATCTTAGTTTATATCTCTTTTATCCATTTCCCCCTACCTAATTAATGTACTTTTCTTTAATTACCTCACTACAACCATTCTAATTCATGACAAATCCACTATAATATGTGTATAATATGTCAGTCGTTCAAAACTGATATATAAATTAAATCAAAACATAATTATCTTATTAATTAAATACAAGAAGATCATTTAAGTTTATAGTTTGGTTTCTTTGTTTCTTTGTAGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAGCCCTTAAGAAAGAAACTAAATTGAAAAGCTTTTGTAAGAAACTGGGCTTTCAAGATCATGACACACCAAGAATATGCATCATCTGCTATATCTTGTATGTATTAACTTTAGGTATTAAACGATGAAAAACTTATCGGATCGCGATTTTTCGTTAGAATTTTAATTAGGATAATCCTTTCGATAACATTTTTGTTTTTAGTTTTAAACACCATATGTGTATTTGCTGCC

mRNA sequence

TGAAAATACACAAAACAAAGTTAAAGATGAGTGTGTCGTATTTATTCTTCTCAGTATAAAGCAAACAGATGGGTTCCCTCCATCTCACGTTTGAAGCCATTATTATTGTTTTCTCTTTTCTTTTTTTGTTTTCTCAATCTCTCTAGGTTCGAGAAAGTGCAATAGAATCCTAAAGAGAAAACCCAATAACACCAAACCACCTTTGAATAAAACCCTTTGTTTTCAACCAAAATATATAACACAAAACAAACTTCACTTCAAACAAATTACACCAATTTCTTTTCTCTCTTTTCTTCTCTCAACATAACCCAAAATCAAAATCCTGTCATGTAGTGAGTTCAGAGAGAGAGAGAGAGAAGAGAGCAGAAAAAATGACTTGTTATTGTTCTTCTTGTAAGTTTGGTTCACTTCTCCTTATGGCTTTTATTTGGCTTTTGTTGGCAAATGGTTCGTGTCAAAGGAAAGAACCCGTCGTGGTGGGGAAGGTGACGACAGCGACGGGAGATGAAATTAGTGGAATTTCCAAAGAGACGACAGTGGCAGTCGGCGGCGGTCGTGGCGGAAAGGTTGTTGATCATCCAGAATGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCAATTCATAATCGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAGCCCTTAAGAAAGAAACTAAATTGAAAAGCTTTTGTAAGAAACTGGGCTTTCAAGATCATGACACACCAAGAATATGCATCATCTGCTATATCTTGTATGTATTAACTTTAGGTATTAAACGATGAAAAACTTATCGGATCGCGATTTTTCGTTAGAATTTTAATTAGGATAATCCTTTCGATAACATTTTTGTTTTTAGTTTTAAACACCATATGTGTATTTGCTGCC

Coding sequence (CDS)

ATGACTTGTTATTGTTCTTCTTGTAAGTTTGGTTCACTTCTCCTTATGGCTTTTATTTGGCTTTTGTTGGCAAATGGTTCGTGTCAAAGGAAAGAACCCGTCGTGGTGGGGAAGGTGACGACAGCGACGGGAGATGAAATTAGTGGAATTTCCAAAGAGACGACAGTGGCAGTCGGCGGCGGTCGTGGCGGAAAGGTTGTTGATCATCCAGAATGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCAATTCATAATCGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAG

Protein sequence

MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA*
Homology
BLAST of CsGy6G020320 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-04
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 73  HLNYMSKRRVPNGPDPIHNRRAGNSGRPP 102
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

BLAST of CsGy6G020320 vs. NCBI nr
Match: XP_004146759.1 (uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical protein Csa_003437 [Cucumis sativus])

HSP 1 Score: 216 bits (550), Expect = 7.84e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60
           MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG
Sbjct: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60

Query: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

BLAST of CsGy6G020320 vs. NCBI nr
Match: XP_008464794.1 (PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo] >KAA0045398.1 Clavata3/esr-related 26, putative isoform 1 [Cucumis melo var. makuwa] >TYK11343.1 Clavata3/esr-related 26, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (476), Expect = 1.48e-59
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0

Query: 1   MTCYC--SSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60
           MTCYC  SSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGG   KV DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGG---KVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of CsGy6G020320 vs. NCBI nr
Match: XP_022946527.1 (uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (328), Expect = 4.93e-37
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G  TT T  +  GISKE  V   G
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVV--G 60

Query: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GRGGK V   EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of CsGy6G020320 vs. NCBI nr
Match: XP_023521565.1 (uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.1 uncharacterized protein LOC111805292 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129 bits (323), Expect = 2.85e-36
Identity = 68/104 (65.38%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G +T  T  +  GISKE  V   G
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMMTITTAAQFGGISKEMEVV--G 60

Query: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GRGGK V   EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of CsGy6G020320 vs. NCBI nr
Match: XP_038886261.1 (uncharacterized protein LOC120076488 [Benincasa hispida])

HSP 1 Score: 129 bits (323), Expect = 3.62e-36
Identity = 75/111 (67.57%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 1   MTCYCSSCKFG-SLLLMAFIWLLLANGSCQRKEPVVVGK------VTTATGDEISGISKE 60
           M+CY  SCK G SL +M FI+LLL NGS QR++PV          +T     E SGISKE
Sbjct: 1   MSCYSPSCKLGNSLAVMVFIFLLLVNGSHQRRQPVAAEMEKATVTITATMTAEFSGISKE 60

Query: 61  TTVAVGGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
             V V GGRG KVV HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  MKV-VHGGRG-KVV-HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 108

BLAST of CsGy6G020320 vs. ExPASy TrEMBL
Match: A0A0A0KJ25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1)

HSP 1 Score: 216 bits (550), Expect = 3.80e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60
           MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG
Sbjct: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60

Query: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

BLAST of CsGy6G020320 vs. ExPASy TrEMBL
Match: A0A5A7TRB3 (Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00170 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 7.17e-60
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0

Query: 1   MTCYC--SSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60
           MTCYC  SSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGG   KV DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGG---KVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of CsGy6G020320 vs. ExPASy TrEMBL
Match: A0A1S3CMA2 (uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 7.17e-60
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0

Query: 1   MTCYC--SSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60
           MTCYC  SSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGG   KV DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGG---KVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of CsGy6G020320 vs. ExPASy TrEMBL
Match: A0A6J1G3Y8 (uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC111450563 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 2.39e-37
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G  TT T  +  GISKE  V   G
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVV--G 60

Query: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GRGGK V   EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of CsGy6G020320 vs. ExPASy TrEMBL
Match: A0A6J1KBR7 (uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 3.95e-36
Identity = 68/104 (65.38%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G  TT T  +  GISKE  V   G
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTAAQFGGISKEMEVV--G 60

Query: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GRGGK V   EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of CsGy6G020320 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 74  LNYM-SKRRVPNGPDPIHNRRAGNSGRPPGKA 105
           L+Y+ SKR+VP GPDPIHNRRAGNS RPPG+A
Sbjct: 71  LSYVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

BLAST of CsGy6G020320 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 46.2 bits (108), Expect = 1.9e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 73  HLNYMSKRRVPNGPDPIHNRRAGNSGRPP 102
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LFL42.6e-0468.97CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P... [more]
Match NameE-valueIdentityDescription
XP_004146759.17.84e-71100.00uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical ... [more]
XP_008464794.11.48e-5987.74PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo] >KAA0045398.1 Cla... [more]
XP_022946527.14.93e-3766.35uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3... [more]
XP_023521565.12.85e-3665.38uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.... [more]
XP_038886261.13.62e-3667.57uncharacterized protein LOC120076488 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A0A0KJ253.80e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1[more]
A0A5A7TRB37.17e-6087.74Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CMA27.17e-6087.74uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=... [more]
A0A6J1G3Y82.39e-3766.35uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1KBR73.95e-3665.38uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028... [more]
Match NameE-valueIdentityDescription
AT1G69970.21.2e-0778.13CLAVATA3/ESR-RELATED 26 [more]
AT3G28455.11.9e-0568.97CLAVATA3/ESR-RELATED 25 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..104
NoneNo IPR availablePANTHERPTHR34277:SF2CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 5..104
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 5..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G020320.2CsGy6G020320.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment