Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCGTCTGATTCAATCAAAGAGAATCCAAGAAGAAATAAGAAGGTCCAGTCCTAAAAAATGGTGGAAAAATTCTTCGCTCACAACACAAACAGAACCTTCCCTATTCTTGGTCCTCCGTGTAAGTAGTGTAATGAAGCAAAGTCCTGTATCTTCTTCTTCTTGGTCCGGTTCTTCAAGGTCGTCTCTTCAACCTAAGGCGGCAAAGCAAGGGTTAAATCCACAAACTCTAGTTAGAAACTTAGAATCAGAAATTCTCTCTCTTTCTCTCTTGTCTGAATTGTGCTTCGTGATTCGAAGACTCGAGAACAAGAAAAAGAATGGGGCCGGCGGAGAAGGGAGGGAGAATCTGGGCCGTCGGATGAATCGGTTGTGGGACCGAGAAGGAGGTGGAGAGAGTGAAACGTGGGGTAAGTGGATTGGATGA mRNA sequence ATGCGTCTGATTCAATCAAAGAGAATCCAAGAAGAAATAAGAAGGTCCAGTCCTAAAAAATGGTGGAAAAATTCTTCGCTCACAACACAAACAGAACCTTCCCTATTCTTGGTCCTCCGTGTAAGTAGTGTAATGAAGCAAAGTCCTGTATCTTCTTCTTCTTGGTCCGGTTCTTCAAGGTCGTCTCTTCAACCTAAGGCGGCAAAGCAAGGGTTAAATCCACAAACTCTAGTTAGAAACTTAGAATCAGAAATTCTCTCTCTTTCTCTCTTGTCTGAATTGTGCTTCGTGATTCGAAGACTCGAGAACAAGAAAAAGAATGGGGCCGGCGGAGAAGGGAGGGAGAATCTGGGCCGTCGGATGAATCGGTTGTGGGACCGAGAAGGAGGTGGAGAGAGTGAAACGTGGGGTAAGTGGATTGGATGA Coding sequence (CDS) ATGCGTCTGATTCAATCAAAGAGAATCCAAGAAGAAATAAGAAGGTCCAGTCCTAAAAAATGGTGGAAAAATTCTTCGCTCACAACACAAACAGAACCTTCCCTATTCTTGGTCCTCCGTGTAAGTAGTGTAATGAAGCAAAGTCCTGTATCTTCTTCTTCTTGGTCCGGTTCTTCAAGGTCGTCTCTTCAACCTAAGGCGGCAAAGCAAGGGTTAAATCCACAAACTCTAGTTAGAAACTTAGAATCAGAAATTCTCTCTCTTTCTCTCTTGTCTGAATTGTGCTTCGTGATTCGAAGACTCGAGAACAAGAAAAAGAATGGGGCCGGCGGAGAAGGGAGGGAGAATCTGGGCCGTCGGATGAATCGGTTGTGGGACCGAGAAGGAGGTGGAGAGAGTGAAACGTGGGGTAAGTGGATTGGATGA Protein sequence MRLIQSKRIQEEIRRSSPKKWWKNSSLTTQTEPSLFLVLRVSSVMKQSPVSSSSWSGSSRSSLQPKAAKQGLNPQTLVRNLESEILSLSLLSELCFVIRRLENKKKNGAGGEGRENLGRRMNRLWDREGGGESETWGKWIG*
Homology
BLAST of CsGy6G020215 vs. NCBI nr
Match: KAE8647283.1 (hypothetical protein Csa_003484 [Cucumis sativus]) HSP 1 Score: 252 bits (644), Expect = 5.57e-84 Identity = 134/140 (95.71%), Postives = 135/140 (96.43%), Query Frame = 0
Query: 1 MRLIQSKRIQEEIRRSSPKKWWKNSSLTTQTEPSLFLVLRVSSVMKQSPVSSSSWSGSSR 60
MRLIQSKRIQEEIRRSS KKWWKNSSLTTQTEPSLFLVLRVSS MKQS VSSSSWSGSSR
Sbjct: 1 MRLIQSKRIQEEIRRSSHKKWWKNSSLTTQTEPSLFLVLRVSSAMKQSTVSSSSWSGSSR 60
Query: 61 SSLQPKAAKQGLNPQTLVRNLESEILSLSLLSELCFVIRRLENKKKNGAGGEGRENLGRR 120
SSLQPKAAKQGLNPQTLVRNLESEILSLSLLSELCFVIRRLENKKKNGAGGEGRENLGRR
Sbjct: 61 SSLQPKAAKQGLNPQTLVRNLESEILSLSLLSELCFVIRRLENKKKNGAGGEGRENLGRR 120
Query: 121 MNRLWDREGGGESETWGKWI 140
MNRLWDREGGGESETWG +
Sbjct: 121 MNRLWDREGGGESETWGDYT 140
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAE8647283.1 | 5.57e-84 | 95.71 | hypothetical protein Csa_003484 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 49..71 |
Relationships
The following mRNA feature(s) are a part of this gene:
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